RchiOBHm_Chr6g0262171

Plastid division protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014520
Physical Location & Seq
Reverse (-)
16879920 .. 16881124
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGGAAGGCAAAGGTTTCACAGAAGAGCAGGAAGCACTGGTGGTGAAGTCCTGGGCTGTAATGAAGAAGAATTCTGCTGAATTGGGTCTTCAGTTCTTCTTGAAGATCTTTGAAATTGCCCCATCAGCTCAGAAGCTGTTTTCATTCTTGAAGGACTCTGATATTCCTCTGGAGAAGAACCCCAAGCTCAAGCCGCATGCTATGTCTGTCTTTGTTATGACTTGTGAATCGGCGGTTCAACTCCGTAAAGCAGGCAAAGTTACAGTGAGGGAATCAACGTTGAAAAGGTTAGGTGGAGTCCATTTCAAGGCCGGAGTAGTGGATGAACATTATGAGGTGACCAAGTTTGCATTGTTGGAAACCATAAAAGAAGCAGTACCAGAGATGTGGTCACCGGAGATGAAGAGTGCATGGGGAGAAGCTTATGATCAGTTGGTTGCTGCTATCAAATCGGAAATGAAGCCCTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

157

Amino Acids

17.55

Weight (kDa)

7.8

Isoelectric Point (pI)

29.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Globin PF00042 31 - 149 4.7e-21 Globin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 194, 233
AclI AACGTT 1 cut(s) 278
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 6 cut(s) 103, 113, 151, 239, 283, 307
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 4 cut(s) 128, 136, 187, 422
AluI AGCT 4 cut(s) 128, 136, 187, 422
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 55, 349, 384
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 52
BclI TGATCA 1 cut(s) 427
BglII AGATCT 1 cut(s) 105
BisI GCNGC 2 cut(s) 194, 441
BlsI GCNGC 2 cut(s) 195, 442
Bme1390I CCNGG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 427
BshFI GGCC 1 cut(s) 311
BsiSI CCGG 2 cut(s) 312, 395
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 105, 427
BspACI CCGC 2 cut(s) 194, 233
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 105, 427
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 18, 398
BstC8I GCNNGC 2 cut(s) 198, 253
BstDEI CTNAG 2 cut(s) 129, 471
BstEII GGTNACC 2 cut(s) 337, 390
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 2 cut(s) 108, 430
BstMBI GATC 2 cut(s) 105, 427
BstMWI GCNNNNNNNGC 2 cut(s) 125, 193
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 200
BstPI GGTNACC 2 cut(s) 337, 390
BstSCI CCNGG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 35, 270
Cac8I GCNNGC 2 cut(s) 198, 253
CaiI CAGNNNCTG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 377
CviAII CATG 2 cut(s) 197, 411
CviJI RGCY 8 cut(s) 56, 128, 136, 187, 193, 311, 422, 463
CviKI_1 RGCY 8 cut(s) 56, 128, 136, 187, 193, 311, 422, 463
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 2 cut(s) 129, 471
DpnI GATC 2 cut(s) 107, 429
DpnII GATC 2 cut(s) 105, 427
Eam1104I CTCTTC 2 cut(s) 18, 398
EarI CTCTTC 2 cut(s) 18, 398
Eco57I CTGAAG 1 cut(s) 74
Eco91I GGTNACC 2 cut(s) 337, 390
EcoO65I GGTNACC 2 cut(s) 337, 390
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 200, 414
FaiI YATR 7 cut(s) 198, 203, 218, 333, 365, 412, 426
FatI CATG 2 cut(s) 196, 410
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 194, 441
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 194, 441
GluI GCNGC 2 cut(s) 194, 441
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 311
HapII CCGG 2 cut(s) 312, 395
Hin1II CATG 2 cut(s) 200, 414
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 4 cut(s) 155, 227, 272, 297
HpaII CCGG 2 cut(s) 312, 395
HphI GGTGA 3 cut(s) 55, 349, 384
Hpy188I TCNGA 3 cut(s) 132, 160, 454
Hpy188III TCNNGA 3 cut(s) 100, 148, 170
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 2 cut(s) 350, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 193
HpyF3I CTNAG 2 cut(s) 129, 471
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 2 cut(s) 200, 414
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 105, 427
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 9 cut(s) 14, 23, 37, 64, 155, 237, 325, 393, 408
Lsp1109I GCAGC 1 cut(s) 427
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 259, 337, 390
MalI GATC 2 cut(s) 107, 429
MboI GATC 2 cut(s) 105, 427
MboII GAAGA 8 cut(s) 35, 76, 79, 80, 88, 115, 187, 415
MflI RGATCY 1 cut(s) 105
MluCI AATT 3 cut(s) 70, 80, 114
MlyI GAGTC 2 cut(s) 149, 306
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 177, 261, 328
MspI CCGG 2 cut(s) 312, 395
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 125, 193
NdeII GATC 2 cut(s) 105, 427
NlaIII CATG 2 cut(s) 200, 414
NmuCI GTSAC 2 cut(s) 337, 390
NspI RCATGY 1 cut(s) 200
PaeI GCATGC 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 227, 272
PkrI GCNGC 2 cut(s) 195, 442
PleI GAGTC 2 cut(s) 149, 305
PpsI GAGTC 2 cut(s) 149, 305
Psp1406I AACGTT 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 50
PspEI GGTNACC 2 cut(s) 337, 390
PspGI CCWGG 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 2 cut(s) 194, 441
Sau3AI GATC 2 cut(s) 105, 427
SchI GAGTC 2 cut(s) 149, 306
ScrFI CCNGG 1 cut(s) 52
SetI ASST 9 cut(s) 16, 130, 138, 189, 281, 290, 295, 339, 424
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SphI GCATGC 1 cut(s) 200
Sse9I AATT 3 cut(s) 70, 80, 114
SsiI CCGC 2 cut(s) 194, 233
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 281
TasI AATT 3 cut(s) 70, 80, 114
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 2 cut(s) 227, 272
TscAI CASTG 2 cut(s) 42, 270
TseFI GTSAC 2 cut(s) 337, 390
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 337, 390
TspDTI ATGAA 5 cut(s) 77, 132, 339, 416, 473
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 42, 270
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.