RchiOBHm_Chr6g0267061

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011943
Physical Location & Seq
Forward (+)
23560910 .. 23562937
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGGCTTCTACCAAGGGTTTGAACCCGTTTGCCGCTGAGTTCGTCAAACCTCAAAACTCGAGTTTCTCAAAAAAAGACTATTCACCGCCTACCCCGCTCAACCCTTATGCCTCATCCTTTTACTGCTTCTCAAATGTTCTACCGGCACCCACAGGCTTCCCAAGTACCCCCATCACTTACTCTCTCCCTTTCCCCACCGATTTTCAATACCCAACTCATTTTGAGCACCGTGTGCTTCCGGCAATCCAGTCGGTTCATAGGACTGTGTCTGCTCAGCCAGAGCTGGTTGAAGTGCAGCAACCAGCTCATGACCTTGTGGCGCAGGAAGCTAACCAAAAATTTGTGCCTCCAAAAGTTCCGAGGATTCGTGGCTCCAAAGGAAGGTATAGGAGGTATAGCCGATTCTTTGATCAGCAAATCGGAAGAAGCAGTACTAGTACAGAGAAGCAGGAGGGGAAGCCTGCTTTGAAGTCGACTGATGAGAAAAAGCTACCAAAGAAATTTATTGATTACAATTGGTGTGTGCCCAGGAGGATGGTGAAGAGATTCTCCAACGTGCTGCCGGTGAGAAAAGACGGTGACGGCACCACCGTCATGATTAGAAACATACCCAATAAGTACTCTCGTGATCTGTTGATGACTTTTCTGGACAAGCACTGTGCGAATGAGAATCGGAAATCTGACGGAGGAGAAGAATCGGAATCGGCCTTTGATTTCTTGTATCTGCCTATTGATTTTTGGACTGGGATGAACAAGGGCTATGCATTTGTAAACTTTACAAAACCAAAAGCTGTGTGGAAGTTTTACTTGGCCGCTCATAGCCAGACATGGGATTCGTTCCACTCCAACAAGATTCGAGAAATCGCCTACGCTCGAATCCAGGGGAAGAAGGACTTGGTTCAACATTTTGAGACAATGGGGTTTCCTTGTGAGTCGGAGGACGTGCTGCCGGTGTGTTTCAGTCCACCGCGGAACGGATCAGAGAAGTTGGTGGAGAGGACATATGTTGGGAAGCTTGAAGGATGGGAAGGGATTGGGTTGAAGCGACAGGCTGCAGGAACTTGGAGGAAGGTGAAGGAAGGAAGCTCAGCTAAGTCATGTGATTTGCCTCAGTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

373

Amino Acids

42.49

Weight (kDa)

9.43

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 196 - 303 4.9e-27 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07930 AT5G07930 AT5G07930
fragaria_vesca FvH4_2g10100 FvH4_2g10100
malus_domestica MD10G1065500.v1.1
prunus_persica Prupe.8G087500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0267061
rosa_laevigata RLG00000014045
rosa_multiflora Rmu_co8325855.1_g000001 Rmu_co8394061.1_g000001 Rmu_sc0013804.1_g000004
rosa_roxburghii Rroxscaffold_7G00201180
rosa_rugosa Rorug06G0028800
rosa_samantha Rh6AG150300 Rh6BG151200 Rh6CG146600 Rh6DG135300
rosa_wichuraiana Rw6G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 145, 584
AccBSI CCGCTC 2 cut(s) 97, 815
AccI GTMKAC 1 cut(s) 473
AccII CGCG 1 cut(s) 970
AciI CCGC 6 cut(s) 33, 86, 95, 813, 968, 970
AclWI GGATC 1 cut(s) 985
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 2 cut(s) 338, 500
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 4 cut(s) 166, 433, 439, 620
AfiI CCNNNNNNNGG 3 cut(s) 381, 829, 974
AgsI TTSAA 7 cut(s) 22, 206, 290, 469, 902, 1019, 1042
AhlI ACTAGT 1 cut(s) 434
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 2 cut(s) 527, 879
AjuI GAANNNNNNNTTGG 4 cut(s) 791, 823, 878, 910
AluBI AGCT 8 cut(s) 283, 305, 329, 490, 791, 1015, 1086, 1091
AluI AGCT 8 cut(s) 283, 305, 329, 490, 791, 1015, 1086, 1091
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 905
AlwI GGATC 1 cut(s) 985
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 2 cut(s) 705, 810
ApeKI GCWGC 4 cut(s) 295, 559, 946, 1052
ApoI RAATTY 2 cut(s) 338, 500
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 1 cut(s) 322
AsuHPI GGTGA 5 cut(s) 75, 550, 577, 590, 1084
AvaI CYCGRG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 528
BanI GGYRCC 2 cut(s) 145, 584
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
BauI CACGAG 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 4 cut(s) 307, 546, 933, 1039
BccI CCATC 3 cut(s) 179, 529, 1017
BceAI ACGGC 1 cut(s) 598
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 2 cut(s) 529, 881
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 905
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 1053
BisI GCNGC 6 cut(s) 33, 296, 560, 813, 947, 1053
BlpI GCTNAGC 2 cut(s) 273, 1087
BlsI GCNGC 6 cut(s) 34, 297, 561, 814, 948, 1054
BmcAI AGTACT 2 cut(s) 433, 620
Bme1390I CCNGG 2 cut(s) 529, 881
BmeT110I CYCGRG 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 943
BmiI GGNNCC 3 cut(s) 147, 373, 586
BmrFI CCNGG 2 cut(s) 529, 881
BmrI ACTGGG 1 cut(s) 753
BmuI ACTGGG 1 cut(s) 753
Bpu1102I GCTNAGC 2 cut(s) 273, 1087
BsaJI CCNNGG 5 cut(s) 12, 359, 527, 880, 968
Bsc4I CCNNNNNNNGG 3 cut(s) 381, 829, 974
Bse118I RCCGGY 3 cut(s) 142, 562, 949
Bse1I ACTGG 2 cut(s) 247, 748
BseBI CCWGG 2 cut(s) 529, 881
BseDI CCNNGG 5 cut(s) 12, 359, 527, 880, 968
BseGI GGATG 4 cut(s) 113, 540, 753, 1028
BseLI CCNNNNNNNGG 3 cut(s) 381, 829, 974
BseMII CTCAG 3 cut(s) 27, 287, 1101
BseNI ACTGG 2 cut(s) 247, 748
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 4 cut(s) 307, 546, 933, 1039
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 970
BshFI GGCC 2 cut(s) 707, 812
BshNI GGYRCC 2 cut(s) 145, 584
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 4 cut(s) 143, 239, 563, 950
BslI CCNNNNNNNGG 3 cut(s) 381, 829, 974
BsmAI GTCTC 1 cut(s) 905
BsnI GGCC 2 cut(s) 707, 812
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 228, 528
Bsp143I GATC 3 cut(s) 409, 628, 977
Bsp1720I GCTNAGC 2 cut(s) 273, 1087
BspACI CCGC 6 cut(s) 33, 86, 95, 813, 968, 970
BspANI GGCC 2 cut(s) 707, 812
BspCNI CTCAG 3 cut(s) 28, 286, 1100
BspFNI CGCG 1 cut(s) 970
BspHI TCATGA 2 cut(s) 307, 594
BspLI GGNNCC 3 cut(s) 147, 373, 586
BspMAI CTGCAG 1 cut(s) 1057
BspPI GGATC 1 cut(s) 985
BspT107I GGYRCC 2 cut(s) 145, 584
BsrBI CCGCTC 2 cut(s) 97, 815
BsrFI RCCGGY 3 cut(s) 142, 562, 949
BsrI ACTGG 2 cut(s) 247, 748
BssAI RCCGGY 3 cut(s) 142, 562, 949
BssECI CCNNGG 5 cut(s) 12, 359, 527, 880, 968
BssMI GATC 3 cut(s) 409, 628, 977
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 2 cut(s) 529, 881
Bst4CI ACNGT 5 cut(s) 230, 265, 578, 592, 659
Bst6I CTCTTC 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 5 cut(s) 36, 273, 1087, 1092, 1110
BstDSI CCRYGG 1 cut(s) 968
BstF5I GGATG 4 cut(s) 113, 540, 753, 1028
BstFNI CGCG 1 cut(s) 970
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 412, 631, 980
BstMAI GTCTC 1 cut(s) 905
BstMBI GATC 3 cut(s) 409, 628, 977
BstMWI GCNNNNNNNGC 3 cut(s) 94, 232, 326
BstNI CCWGG 2 cut(s) 529, 881
BstSCI CCNGG 2 cut(s) 527, 879
BstSFI CTRYAG 1 cut(s) 1053
BstSLI GKGCMC 1 cut(s) 528
BstUI CGCG 1 cut(s) 970
BstV1I GCAGC 4 cut(s) 307, 546, 933, 1039
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuRI GGCC 2 cut(s) 707, 812
BtgI CCRYGG 1 cut(s) 968
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 4 cut(s) 113, 540, 753, 1028
BtsIMutI CAGTG 2 cut(s) 655, 1118
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 2 cut(s) 307, 594
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 3 cut(s) 142, 562, 949
Cfr42I CCGCGG 1 cut(s) 971
Csp6I GTAC 4 cut(s) 165, 432, 438, 619
CviAII CATG 4 cut(s) 308, 595, 828, 1098
CviQI GTAC 4 cut(s) 165, 432, 438, 619
DdeI CTNAG 5 cut(s) 36, 273, 1087, 1092, 1110
DpnI GATC 3 cut(s) 411, 630, 979
DpnII GATC 3 cut(s) 409, 628, 977
DraIII CACNNNGTG 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 527, 879
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 311, 598, 831, 1101
FalI AAGNNNNNCTT 4 cut(s) 791, 823, 878, 910
FatI CATG 4 cut(s) 307, 594, 827, 1097
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 1003
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 6 cut(s) 33, 296, 560, 813, 947, 1053
FokI GGATG 4 cut(s) 100, 547, 760, 1035
Fsp4HI GCNGC 6 cut(s) 33, 296, 560, 813, 947, 1053
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 321
GluI GCNGC 6 cut(s) 33, 296, 560, 813, 947, 1053
HaeIII GGCC 2 cut(s) 707, 812
HapII CCGG 4 cut(s) 143, 239, 563, 950
HhaI GCGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 311, 598, 831, 1101
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HindIII AAGCTT 1 cut(s) 1013
HpaII CCGG 4 cut(s) 143, 239, 563, 950
HphI GGTGA 5 cut(s) 75, 550, 577, 590, 1084
Hpy166II GTNNAC 3 cut(s) 474, 772, 965
Hpy188I TCNGA 7 cut(s) 360, 422, 675, 682, 700, 937, 982
Hpy188III TCNNGA 5 cut(s) 308, 595, 626, 647, 857
Hpy8I GTNNAC 3 cut(s) 474, 772, 965
HpyAV CCTTC 7 cut(s) 375, 883, 1013, 1022, 1063, 1069, 1073
HpyCH4III ACNGT 5 cut(s) 230, 265, 578, 592, 659
HpyCH4IV ACGT 2 cut(s) 555, 942
HpyCH4V TGCA 4 cut(s) 295, 764, 1055, 1116
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 232, 326
HpyF3I CTNAG 5 cut(s) 36, 273, 1087, 1092, 1110
HpySE526I ACGT 2 cut(s) 555, 942
Hsp92II CATG 4 cut(s) 311, 598, 831, 1101
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 971
Kzo9I GATC 3 cut(s) 409, 628, 977
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 4 cut(s) 307, 546, 933, 1039
MaeI CTAG 1 cut(s) 435
MaeII ACGT 2 cut(s) 555, 942
MaeIII GTNAC 1 cut(s) 578
MalI GATC 3 cut(s) 411, 630, 979
MbiI CCGCTC 2 cut(s) 97, 815
MboI GATC 3 cut(s) 409, 628, 977
MboII GAAGA 4 cut(s) 435, 553, 704, 898
MfeI CAATTG 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 228, 528
MluCI AATT 4 cut(s) 338, 500, 514, 1117
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 3 cut(s) 576, 870, 915
Mph1103I ATGCAT 1 cut(s) 766
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 1 cut(s) 1120
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 2 cut(s) 35, 970
MspI CCGG 4 cut(s) 143, 239, 563, 950
MspR9I CCNGG 2 cut(s) 529, 881
MunI CAATTG 1 cut(s) 514
MvaI CCWGG 2 cut(s) 529, 881
MvnI CGCG 1 cut(s) 970
MwoI GCNNNNNNNGC 3 cut(s) 94, 232, 326
NdeI CATATG 1 cut(s) 1003
NdeII GATC 3 cut(s) 409, 628, 977
NlaIII CATG 4 cut(s) 311, 598, 831, 1101
NlaIV GGNNCC 3 cut(s) 147, 373, 586
NmuCI GTSAC 1 cut(s) 578
NsiI ATGCAT 1 cut(s) 766
PaeR7I CTCGAG 1 cut(s) 58
PagI TCATGA 2 cut(s) 307, 594
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 9 cut(s) 364, 402, 546, 670, 695, 701, 833, 853, 876
PflFI GACNNNGTC 1 cut(s) 265
PkrI GCNGC 6 cut(s) 34, 297, 561, 814, 948, 1054
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
Psp6I CCWGG 2 cut(s) 527, 879
PspGI CCWGG 2 cut(s) 527, 879
PspN4I GGNNCC 3 cut(s) 147, 373, 586
PspXI VCTCGAGB 1 cut(s) 58
PstI CTGCAG 1 cut(s) 1057
PsyI GACNNNGTC 1 cut(s) 265
RsaI GTAC 4 cut(s) 166, 433, 439, 620
RsaNI GTAC 4 cut(s) 165, 432, 438, 619
RseI CAYNNNNRTG 1 cut(s) 593
SacII CCGCGG 1 cut(s) 971
SalI GTCGAC 1 cut(s) 472
SaqAI TTAA 1 cut(s) 1120
SatI GCNGC 6 cut(s) 33, 296, 560, 813, 947, 1053
Sau3AI GATC 3 cut(s) 409, 628, 977
ScaI AGTACT 2 cut(s) 433, 620
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 2 cut(s) 529, 881
SduI GDGCHC 2 cut(s) 228, 528
SfcI CTRYAG 1 cut(s) 1053
Sfr274I CTCGAG 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 971
SgrBI CCGCGG 1 cut(s) 971
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 4 cut(s) 338, 500, 514, 1117
SsiI CCGC 6 cut(s) 33, 86, 95, 813, 968, 970
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 527, 879
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 5 cut(s) 230, 265, 578, 592, 659
TaiI ACGT 2 cut(s) 558, 945
TaqI TCGA 4 cut(s) 59, 473, 856, 874
TasI AATT 4 cut(s) 338, 500, 514, 1117
TatI WGTACW 3 cut(s) 431, 437, 618
TauI GCSGC 2 cut(s) 35, 815
TfiI GAWTC 9 cut(s) 364, 402, 546, 670, 695, 701, 833, 853, 876
Tru1I TTAA 1 cut(s) 1120
Tru9I TTAA 1 cut(s) 1120
TscAI CASTG 2 cut(s) 662, 1118
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 4 cut(s) 295, 559, 946, 1052
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 2 cut(s) 245, 764
TspGWI ACGGA 2 cut(s) 699, 990
TspRI CASTG 2 cut(s) 662, 1118
Tth111I GACNNNGTC 1 cut(s) 265
XapI RAATTY 2 cut(s) 338, 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 792
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 2 cut(s) 433, 620
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.