Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018633

Physical Location & Seq

Genomic Coordinates Reverse (-)

24145301 .. 24146119

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGGATCAGAACAAACATGATGATGCCAAGACCAGCAGTACTAGTTCACTGAACAACAGTAAAAATACTAATACATCCAGTACCTTTATATTTAAATGCCTGTTCTGTAATGAGAAAACTCCTCTACTAAACGCATTCCATATAAAGGGTTGCAACCATTTTTATTGTCCCCCATGCGTTGTCAAATTCGTGGTGTCCAAGCTCCAAGATGACATCACGTCCATTATGTGCCCGGTATCATACTGCAGTACTGGAGTGTTAGACCTCGAGTACTGCCGAAGAATCCTCCCTAAGGATGTAACTGATCGATGGGAAAAAGCCTTGTCCGAAAATAATAATAATGTGACTACGGGGCTGCCATCTGACAAGTACTTGAACTGTCCCTTCAAGGCTTGCGCGGCACGGTTGAAATTCTCTGAAGTACGGGATTATCTGTACATGATGAAAAAGAGAAGGCTACTACCTTCTGGATTTTGGAGCGGGTTTAACACCGAGAACAAGTATATGTGTCCTAGTTGCAACAGAGAATTTTGTATCAAGTGTAGGGTTCCTTACCATTCTGAATTCAATTGTTTTTTGTATCAGAAACTTAGGGTCAATGGAGGCGGCGAAGAAGGGATGGTGATGTACCTTGCAGGGATGAAACAATGGAAGCGGTGTCCATGCTGCAACTACTATGTGATAAAAGAGGACAGCAGCTGCAGCATTAACTACGTCACATGCTGGTGTGGACATACTTTCTGTTACTATTGTCTATTACCATCAGGTAGTCATCACCATGATAAAAGCAAATGTAAACCCATCTTCCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

272

Amino Acids

31.35

Weight (kDa)

8.71

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018633)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267431
rosa_laevigata	RLG00000014006 RLG00000014010
rosa_multiflora	Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii	Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa	Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana	Rw0G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	483
AccII	CGCG	1 cut(s)	401
AciI	CCGC	4 cut(s)	401, 483, 609, 658
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	4 cut(s)	188, 413, 530, 566
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	8 cut(s)	43, 85, 253, 275, 374, 426, 440, 632
AfiI	CCNNNNNNNGG	2 cut(s)	148, 295
AgsI	TTSAA	4 cut(s)	379, 391, 412, 571
AhdI	GACNNNNNGTC	1 cut(s)	220
AhlI	ACTAGT	1 cut(s)	44
AjiI	CACGTC	1 cut(s)	222
AluBI	AGCT	2 cut(s)	205, 702
AluI	AGCT	2 cut(s)	205, 702
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	702
Ama87I	CYCGRG	1 cut(s)	269
ApeKI	GCWGC	5 cut(s)	358, 669, 699, 702, 705
ApoI	RAATTY	4 cut(s)	188, 413, 530, 566
AspLEI	GCGC	1 cut(s)	401
AsuC2I	CCSGG	2 cut(s)	236, 812
AsuHPI	GGTGA	2 cut(s)	637, 770
AvaI	CYCGRG	1 cut(s)	269
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	236
BbvI	GCAGC	5 cut(s)	345, 656, 689, 711, 717
BccI	CCATC	5 cut(s)	306, 370, 616, 772, 812
BcnI	CCSGG	2 cut(s)	236, 812
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	2 cut(s)	45, 516
BfmI	CTRYAG	2 cut(s)	247, 703
BisI	GCNGC	7 cut(s)	359, 402, 610, 670, 700, 703, 706
BlsI	GCNGC	7 cut(s)	360, 403, 611, 671, 701, 704, 707
BmcAI	AGTACT	4 cut(s)	43, 253, 275, 374
Bme1390I	CCNGG	2 cut(s)	236, 812
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	2 cut(s)	236, 812
BmsI	GCATC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	236, 812
Bsa29I	ATCGAT	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 295
Bse1I	ACTGG	2 cut(s)	81, 259
Bse21I	CCTNAGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	310
BseGI	GGATG	4 cut(s)	77, 304, 627, 648
BseLI	CCNNNNNNNGG	2 cut(s)	148, 295
BseNI	ACTGG	2 cut(s)	81, 259
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	5 cut(s)	345, 656, 689, 711, 717
Bsh1236I	CGCG	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	236, 812
BslFI	GGGAC	2 cut(s)	156, 369
BslI	CCNNNNNNNGG	2 cut(s)	148, 295
BsmFI	GGGAC	2 cut(s)	156, 369
BsmI	GAATGC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	7, 307
BspACI	CCGC	4 cut(s)	401, 483, 609, 658
BspDI	ATCGAT	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	2 cut(s)	251, 707
BspPI	GGATC	1 cut(s)	15
BsrBI	CCGCTC	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	81, 259
BssMI	GATC	2 cut(s)	7, 307
Bst4CI	ACNGT	3 cut(s)	62, 383, 408
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	3 cut(s)	294, 593, 816
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	4 cut(s)	77, 304, 627, 648
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	2 cut(s)	10, 310
BstMBI	GATC	2 cut(s)	7, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 705
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	2 cut(s)	234, 810
BstSFI	CTRYAG	2 cut(s)	247, 703
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	5 cut(s)	345, 656, 689, 711, 717
Bsu15I	ATCGAT	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	222
BtsCI	GGATG	4 cut(s)	77, 304, 627, 648
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	397
CaiI	CAGNNNCTG	1 cut(s)	702
CfoI	GCGC	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	310
Csp6I	GTAC	8 cut(s)	42, 84, 252, 274, 373, 425, 439, 631
CviAII	CATG	6 cut(s)	20, 177, 442, 666, 723, 782
CviJI	RGCY	7 cut(s)	205, 323, 358, 395, 460, 702, 815
CviKI_1	RGCY	7 cut(s)	205, 323, 358, 395, 460, 702, 815
CviQI	GTAC	8 cut(s)	42, 84, 252, 274, 373, 425, 439, 631
DdeI	CTNAG	3 cut(s)	294, 593, 816
DpnI	GATC	2 cut(s)	9, 309
DpnII	GATC	2 cut(s)	7, 307
DraI	TTTAAA	1 cut(s)	97
DriI	GACNNNNNGTC	1 cut(s)	220
Eam1105I	GACNNNNNGTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	441
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	566
FaeI	CATG	6 cut(s)	23, 180, 445, 669, 726, 785
FaqI	GGGAC	2 cut(s)	156, 369
FatI	CATG	6 cut(s)	19, 176, 441, 665, 722, 781
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	7 cut(s)	359, 402, 610, 670, 700, 703, 706
FokI	GGATG	4 cut(s)	64, 311, 634, 655
Fsp4HI	GCNGC	7 cut(s)	359, 402, 610, 670, 700, 703, 706
FspBI	CTAG	2 cut(s)	45, 516
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	7 cut(s)	359, 402, 610, 670, 700, 703, 706
GsuI	CTGGAG	1 cut(s)	276
HapII	CCGG	2 cut(s)	236, 812
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	6 cut(s)	23, 180, 445, 669, 726, 785
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	2 cut(s)	236, 812
HphI	GGTGA	2 cut(s)	637, 770
Hpy166II	GTNNAC	3 cut(s)	50, 734, 800
Hpy188I	TCNGA	6 cut(s)	12, 331, 367, 421, 565, 588
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	3 cut(s)	50, 734, 800
HpyAV	CCTTC	4 cut(s)	397, 450, 477, 611
HpyCH4III	ACNGT	3 cut(s)	62, 383, 408
HpyCH4IV	ACGT	2 cut(s)	221, 717
HpyCH4V	TGCA	6 cut(s)	156, 249, 522, 638, 672, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 705
HpyF3I	CTNAG	3 cut(s)	294, 593, 816
HpySE526I	ACGT	2 cut(s)	221, 717
Hsp92II	CATG	6 cut(s)	23, 180, 445, 669, 726, 785
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	7, 307
LmnI	GCTCC	2 cut(s)	210, 480
LpnPI	CCDG	9 cut(s)	49, 94, 116, 240, 249, 456, 624, 712, 753
Lsp1109I	GCAGC	5 cut(s)	345, 656, 689, 711, 717
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	45, 516
MaeII	ACGT	2 cut(s)	221, 717
MaeIII	GTNAC	4 cut(s)	301, 346, 718, 746
MalI	GATC	2 cut(s)	9, 309
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	2 cut(s)	7, 307
MboII	GAAGA	3 cut(s)	294, 626, 799
MfeI	CAATTG	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	5 cut(s)	188, 413, 530, 566, 571
MnlI	CCTC	5 cut(s)	135, 278, 299, 599, 685
MseI	TTAA	3 cut(s)	96, 489, 711
MslI	CAYNNNNRTG	3 cut(s)	24, 727, 780
MspA1I	CMGCKG	1 cut(s)	702
MspI	CCGG	2 cut(s)	236, 812
MspR9I	CCNGG	2 cut(s)	236, 812
MunI	CAATTG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	137
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	401, 705
NciI	CCSGG	2 cut(s)	236, 812
NdeII	GATC	2 cut(s)	7, 307
NlaIII	CATG	6 cut(s)	23, 180, 445, 669, 726, 785
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	2 cut(s)	346, 718
NspI	RCATGY	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	269
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	7 cut(s)	360, 403, 611, 671, 701, 704, 707
PspN4I	GGNNCC	1 cut(s)	552
PspXI	VCTCGAGB	1 cut(s)	269
PstI	CTGCAG	2 cut(s)	251, 707
PstNI	CAGNNNCTG	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	702
RsaI	GTAC	8 cut(s)	43, 85, 253, 275, 374, 426, 440, 632
RsaNI	GTAC	8 cut(s)	42, 84, 252, 274, 373, 425, 439, 631
RseI	CAYNNNNRTG	3 cut(s)	24, 727, 780
SaqAI	TTAA	3 cut(s)	96, 489, 711
SatI	GCNGC	7 cut(s)	359, 402, 610, 670, 700, 703, 706
Sau3AI	GATC	2 cut(s)	7, 307
ScaI	AGTACT	4 cut(s)	43, 253, 275, 374
ScrFI	CCNGG	2 cut(s)	236, 812
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	9 cut(s)	89, 207, 224, 270, 469, 636, 704, 720, 772
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	2 cut(s)	247, 703
Sfr274I	CTCGAG	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	269
SmiI	ATTTAAAT	1 cut(s)	97
SmiMI	CAYNNNNRTG	3 cut(s)	24, 727, 780
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	5 cut(s)	188, 413, 530, 566, 571
SsiI	CCGC	4 cut(s)	401, 483, 609, 658
SspMI	CTAG	2 cut(s)	45, 516
StyD4I	CCNGG	2 cut(s)	234, 810
SwaI	ATTTAAAT	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	62, 383, 408
TaiI	ACGT	2 cut(s)	224, 720
TaqI	TCGA	2 cut(s)	270, 310
TasI	AATT	5 cut(s)	188, 413, 530, 566, 571
TatI	WGTACW	5 cut(s)	41, 251, 273, 372, 438
TauI	GCSGC	2 cut(s)	404, 612
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	3 cut(s)	96, 489, 711
Tru9I	TTAA	3 cut(s)	96, 489, 711
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	346, 718
TseI	GCWGC	5 cut(s)	358, 669, 699, 702, 705
Tsp45I	GTSAC	2 cut(s)	346, 718
TspDTI	ATGAA	2 cut(s)	461, 659
TspRI	CASTG	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	4 cut(s)	188, 413, 530, 566
XceI	RCATGY	1 cut(s)	726
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	2 cut(s)	45, 516
ZrmI	AGTACT	4 cut(s)	43, 253, 275, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.