Rw0G010740

In Between Ring fingers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00461
OG0018633
Physical Location & Seq
Reverse (-)
11349 .. 12326
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010740.1

Sequence Viewer

Length: 930 bp
ATGATAGTGAGTATCCATGATAAGAAGGTGAAAAGAAGAGAAGCAGCACTAAATAGAATGAAGAAACTTGGAGACCAAGTGGTTAAGATCTGCATGTCCATCGTGGCCAAACTCCAAGTACACAATAAGAACAAACCAAGGGGATCTTCCAATAAGACGATGGAGGATCAGAACAAACATGATGATGCCAAGACCAGCAGTACTAGTTCACTGAACAACAGTAAAAATACTCATACATCCAGTACCTTTATATTTAAATGCCTGTTCTGTAATGAGAAAACTCCTCTACTAAACGCATTCCATATAAAGGGTTGCAACCATTTTTATTGTCCCCCATGCGTTGTCAAATTCGTGGTGTCCAAGCTCCAAGATGACATCACGTCCATTATGTACCCGGTATCATACTGCAGTACTGGAGTGTTAGACCTCGAGTACTGCCGAAGAATCCTCCCGAAGGATGTAACTGATCGATGGGAAAAAGCCTTGTCCGAAAATAATAATAATGTGACTACGGGGCTGCCATCTGACAAGTACTTGAACTGTCCCTTCAAGGCTTGCGCGGCACGGTTGAACTTCGCTGAAGTACGGGATTATCTGTACATGATGAAAAAGAGAAGGCTACTATCTTCTGGATTTTGGAGCGGGTTTAACACCGAGAACAAGTATTTGTGTCCTAGTTGCAACAGAGAATTCTGTATCAAGTGTAGGGTTCCTTACCATTCTGAATTCAATTGTTTTTTGTATCAGAAACTTAGGGTCAATGGAGGCGGTGAAGAAGGGATGGTGATGTACCTTGCAGGGATGAAACAATGGAAGCGGTGTCCATGCTGCAACTACTATTGTGGACATACTTTCTGTTACTATTGTCTATTACCATCAGGTAGTCATCACCATGATAAAAGCAAATGTAAACCCATCTTCCCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR

Protein Analysis

309

Amino Acids

35.55

Weight (kDa)

9.24

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018633)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267431
rosa_laevigata RLG00000014006 RLG00000014010
rosa_multiflora Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana Rw0G010740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 642
AccII CGCG 1 cut(s) 560
AciI CCGC 4 cut(s) 560, 642, 768, 817
AclWI GGATC 2 cut(s) 151, 174
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 347, 689, 725
AcuI CTGAAG 1 cut(s) 600
AfiI CCNNNNNNNGG 2 cut(s) 307, 454
AgsI TTSAA 4 cut(s) 538, 550, 571, 730
AhdI GACNNNNNGTC 1 cut(s) 379
AhlI ACTAGT 1 cut(s) 203
AjiI CACGTC 1 cut(s) 381
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 151, 174
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 44, 517, 828
ApoI RAATTY 3 cut(s) 347, 689, 725
AspLEI GCGC 1 cut(s) 560
AsuC2I CCSGG 2 cut(s) 395, 923
AsuHPI GGTGA 4 cut(s) 40, 782, 796, 881
AvaI CYCGRG 1 cut(s) 428
BalI TGGCCA 1 cut(s) 107
BbvI GCAGC 3 cut(s) 56, 504, 815
BccI CCATC 7 cut(s) 107, 154, 465, 529, 775, 883, 923
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciVI GTATCC 1 cut(s) 23
BcnI CCSGG 2 cut(s) 395, 923
BcoDI GTCTC 1 cut(s) 66
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 2 cut(s) 204, 675
BfmI CTRYAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 23
BglII AGATCT 1 cut(s) 87
BisI GCNGC 4 cut(s) 45, 518, 561, 829
BlsI GCNGC 4 cut(s) 46, 519, 562, 830
BmcAI AGTACT 4 cut(s) 202, 412, 434, 533
Bme1390I CCNGG 2 cut(s) 395, 923
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 2 cut(s) 395, 923
BmsI GCATC 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 435
BpuMI CCSGG 2 cut(s) 395, 923
Bsa29I ATCGAT 1 cut(s) 469
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 454
Bse1I ACTGG 2 cut(s) 240, 418
BseCI ATCGAT 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 4 cut(s) 236, 463, 786, 807
BseLI CCNNNNNNNGG 2 cut(s) 307, 454
BseNI ACTGG 2 cut(s) 240, 418
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 56, 504, 815
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 395, 923
BslFI GGGAC 2 cut(s) 315, 528
BslI CCNNNNNNNGG 2 cut(s) 307, 454
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 315, 528
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 428
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 4 cut(s) 87, 143, 166, 466
BspACI CCGC 4 cut(s) 560, 642, 768, 817
BspANI GGCC 1 cut(s) 107
BspDI ATCGAT 1 cut(s) 469
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 1 cut(s) 711
BspMAI CTGCAG 1 cut(s) 410
BspPI GGATC 2 cut(s) 151, 174
BspTNI GGTCTC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 2 cut(s) 240, 418
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 4 cut(s) 87, 143, 166, 466
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 221, 542, 567
Bst6I CTCTTC 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 2 cut(s) 752, 927
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 4 cut(s) 236, 463, 786, 807
BstFNI CGCG 1 cut(s) 560
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 4 cut(s) 90, 146, 169, 469
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 87, 143, 166, 466
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 393, 921
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 3 cut(s) 56, 504, 815
BstX2I RGATCY 2 cut(s) 87, 143
BstYI RGATCY 2 cut(s) 87, 143
Bsu15I ATCGAT 1 cut(s) 469
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 469
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 4 cut(s) 236, 463, 786, 807
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 556
CfoI GCGC 1 cut(s) 560
ClaI ATCGAT 1 cut(s) 469
CviAII CATG 7 cut(s) 17, 94, 179, 336, 601, 825, 893
CviJI RGCY 7 cut(s) 107, 364, 482, 517, 554, 619, 926
CviKI_1 RGCY 7 cut(s) 107, 364, 482, 517, 554, 619, 926
DdeI CTNAG 2 cut(s) 752, 927
DpnI GATC 4 cut(s) 89, 145, 168, 468
DpnII GATC 4 cut(s) 87, 143, 166, 466
DraI TTTAAA 1 cut(s) 256
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 31
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoRI GAATTC 2 cut(s) 689, 725
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 7 cut(s) 20, 97, 182, 339, 604, 828, 896
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FaqI GGGAC 2 cut(s) 315, 528
FatI CATG 7 cut(s) 16, 93, 178, 335, 600, 824, 892
FauI CCCGC 1 cut(s) 635
Fnu4HI GCNGC 4 cut(s) 45, 518, 561, 829
FokI GGATG 4 cut(s) 223, 470, 793, 814
Fsp4HI GCNGC 4 cut(s) 45, 518, 561, 829
FspBI CTAG 2 cut(s) 204, 675
GlaI GCGC 1 cut(s) 559
GluI GCNGC 4 cut(s) 45, 518, 561, 829
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 395, 923
HhaI GCGC 1 cut(s) 560
Hin1II CATG 7 cut(s) 20, 97, 182, 339, 604, 828, 896
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HinfI GANTC 1 cut(s) 444
HpaII CCGG 2 cut(s) 395, 923
HphI GGTGA 4 cut(s) 40, 782, 796, 881
Hpy166II GTNNAC 4 cut(s) 121, 209, 845, 911
Hpy188I TCNGA 5 cut(s) 171, 490, 526, 724, 747
Hpy188III TCNNGA 2 cut(s) 451, 630
Hpy8I GTNNAC 4 cut(s) 121, 209, 845, 911
HpyAV CCTTC 5 cut(s) 19, 448, 556, 609, 770
HpyCH4III ACNGT 3 cut(s) 221, 542, 567
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 6 cut(s) 93, 315, 408, 681, 797, 831
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 2 cut(s) 752, 927
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 7 cut(s) 20, 97, 182, 339, 604, 828, 896
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 4 cut(s) 87, 143, 166, 466
LmnI GCTCC 2 cut(s) 369, 639
LpnPI CCDG 8 cut(s) 208, 253, 275, 399, 408, 615, 783, 864
Lsp1109I GCAGC 3 cut(s) 56, 504, 815
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 204, 675
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 3 cut(s) 460, 505, 857
MalI GATC 4 cut(s) 89, 145, 168, 468
MbiI CCGCTC 1 cut(s) 642
MboI GATC 4 cut(s) 87, 143, 166, 466
MboII GAAGA 7 cut(s) 48, 73, 138, 453, 618, 785, 910
MfeI CAATTG 1 cut(s) 730
MflI RGATCY 2 cut(s) 87, 143
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 4 cut(s) 347, 689, 725, 730
MluNI TGGCCA 1 cut(s) 107
MnlI CCTC 5 cut(s) 157, 294, 437, 458, 758
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MseI TTAA 3 cut(s) 84, 255, 648
MslI CAYNNNNRTG 2 cut(s) 183, 891
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 2 cut(s) 395, 923
MspR9I CCNGG 2 cut(s) 395, 923
MunI CAATTG 1 cut(s) 730
Mva1269I GAATGC 1 cut(s) 296
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 1 cut(s) 560
NciI CCSGG 2 cut(s) 395, 923
NdeII GATC 4 cut(s) 87, 143, 166, 466
NlaIII CATG 7 cut(s) 20, 97, 182, 339, 604, 828, 896
NlaIV GGNNCC 1 cut(s) 711
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 428
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 444
PkrI GCNGC 4 cut(s) 46, 519, 562, 830
PspN4I GGNNCC 1 cut(s) 711
PspXI VCTCGAGB 1 cut(s) 428
PstI CTGCAG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 87, 143
RseI CAYNNNNRTG 2 cut(s) 183, 891
SaqAI TTAA 3 cut(s) 84, 255, 648
SatI GCNGC 4 cut(s) 45, 518, 561, 829
Sau3AI GATC 4 cut(s) 87, 143, 166, 466
ScaI AGTACT 4 cut(s) 202, 412, 434, 533
ScrFI CCNGG 2 cut(s) 395, 923
SetI ASST 7 cut(s) 30, 248, 366, 383, 429, 795, 883
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 428
SmiI ATTTAAAT 1 cut(s) 256
SmiMI CAYNNNNRTG 2 cut(s) 183, 891
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SpeI ACTAGT 1 cut(s) 203
Sse9I AATT 4 cut(s) 347, 689, 725, 730
SsiI CCGC 4 cut(s) 560, 642, 768, 817
SspMI CTAG 2 cut(s) 204, 675
StyD4I CCNGG 2 cut(s) 393, 921
StyI CCWWGG 1 cut(s) 137
SwaI ATTTAAAT 1 cut(s) 256
TaaI ACNGT 3 cut(s) 221, 542, 567
TaiI ACGT 1 cut(s) 383
TaqI TCGA 2 cut(s) 429, 469
TasI AATT 4 cut(s) 347, 689, 725, 730
TatI WGTACW 6 cut(s) 118, 200, 410, 432, 531, 597
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 1 cut(s) 444
Tru1I TTAA 3 cut(s) 84, 255, 648
Tru9I TTAA 3 cut(s) 84, 255, 648
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 3 cut(s) 44, 517, 828
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 3 cut(s) 74, 620, 818
TspRI CASTG 1 cut(s) 216
XagI CCTNNNNNAGG 1 cut(s) 452
XapI RAATTY 3 cut(s) 347, 689, 725
XceI RCATGY 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 2 cut(s) 204, 675
ZrmI AGTACT 4 cut(s) 202, 412, 434, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.