Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018633

Physical Location & Seq

Genomic Coordinates Forward (+)

48201839 .. 48204062

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGACGGTGAGTATCCAGGATAAGAAGGTGAAAAGAAGAGAAGCAGCACTAAAGAGAATGAAGAAACTTGGAGACCAAGTGGTTAAGATCTGCATGTCCATCGTGGCCAAACTCCAAGTACACAATAAGAACAAACCAAGGGGATCTTCCAGTAAAAATACTAGTACAACTAGTACCTTTTTATTTAAATGTCGGTTCTGTGATGAGGAAACTCCTCTACTAAACGCATTCCATATAAAGGGTTGCAACCATTTTTATTGTCCCCCATGCATTGTCAAATTCGTGGTGTCCAAGCTCCAAGATGACATCACGTCCATTATGTGCCCGGTATCATACTGCAGTACTGGAGTGTTAGACCTCGAGTACTGCCGAAGAATCCTCCCGAAGGATGTAACTGATCGATGGAAAAAAGCCTTGTCTGAAAATAATAATGTGACTACGGGGCTGCCATCTGACAAGTACTTGAACTGTCCCTTCAAGGCTTGCGTGGCACGGTTGAACTTCACTGAAGTACGGGATTATCTGTATGTGATGGAAAAGGGAGGGCTACTACCTTCTGGGTTTCGAGCAGGTTTAGCACCAAGAACAAGTATATGTGTCCTAGTTGCAACAGAGAGTTTTGTATCAAGTGTAGGGTTCCTTACCATTCCGAATTCAATTGTTTTCTGTATCAGAAACTTAAGGTCAATGGGGGCGGTGAAGAAGGGATGGGATGAAACAATGGAAGAGGTGTCCATGCTGCAACTACTATGTGATAAAAGAGGACAGCAGCTGCAGCATCAACTACGTCACATGCTGCCTAGGAAACAGAAAACACCTTGCAGAAACCAGAACACTAAGCTACAGAAAAACTTGCGAATCAAAGAACGCTATTTAATAACCTCAGTAGCAAACACTTGGCACACTCCAAGTCCAAAACTACAAGATTCTAGTGATTCTAAGACTGGCATTGCAGTTGTGCGCTGGTTCCCATATGTTAGAATATGCTTTTCTCAATTCACTTTTATTAAGTTGAGCAAACAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006486 GO:0006807 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008152 GO:0008565 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017119 GO:0019538 GO:0031090 GO:0031647 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0050821 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070085 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0099023 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec34

Protein Analysis

342

Amino Acids

39.01

Weight (kDa)

9.73

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018633)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267431
rosa_laevigata	RLG00000014006 RLG00000014010
rosa_multiflora	Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii	Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa	Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana	Rw0G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	560
AciI	CCGC	1 cut(s)	695
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	278, 652
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	7 cut(s)	120, 166, 175, 343, 365, 461, 513
AfiI	CCNNNNNNNGG	2 cut(s)	238, 385
AflII	CTTAAG	1 cut(s)	679
AgsI	TTSAA	4 cut(s)	466, 478, 499, 657
AhdI	GACNNNNNGTC	1 cut(s)	310
AhlI	ACTAGT	2 cut(s)	161, 170
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	3 cut(s)	295, 772, 841
AluI	AGCT	3 cut(s)	295, 772, 841
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	772
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	7 cut(s)	44, 445, 739, 769, 772, 775, 796
ApoI	RAATTY	2 cut(s)	278, 652
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	963
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	19, 40, 709
AvaI	CYCGRG	1 cut(s)	359
AvrII	CCTAGG	1 cut(s)	800
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	107
BbvI	GCAGC	7 cut(s)	56, 432, 726, 759, 781, 783, 787
BccI	CCATC	5 cut(s)	107, 396, 457, 526, 702
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	2 cut(s)	161, 170
BfaI	CTAG	5 cut(s)	162, 171, 602, 801, 930
BfmI	CTRYAG	3 cut(s)	337, 773, 842
BfrI	CTTAAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	7 cut(s)	45, 446, 740, 770, 773, 776, 797
BlnI	CCTAGG	1 cut(s)	800
BlsI	GCNGC	7 cut(s)	46, 447, 741, 771, 774, 777, 798
BmcAI	AGTACT	3 cut(s)	343, 365, 461
Bme1390I	CCNGG	2 cut(s)	17, 326
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	638, 968
BmrFI	CCNGG	2 cut(s)	17, 326
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	137, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 385
Bse1I	ACTGG	3 cut(s)	150, 349, 949
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	137, 800
BseGI	GGATG	3 cut(s)	394, 713, 718
BseLI	CCNNNNNNNGG	2 cut(s)	238, 385
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	3 cut(s)	150, 349, 949
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	7 cut(s)	56, 432, 726, 759, 781, 783, 787
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	246, 456
BslI	CCNNNNNNNGG	2 cut(s)	238, 385
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	246, 456
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	87, 143, 397
BspACI	CCGC	1 cut(s)	695
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	896
BspDI	ATCGAT	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	638, 968
BspMAI	CTGCAG	2 cut(s)	341, 777
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	151
BspTI	CTTAAG	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	3 cut(s)	150, 349, 949
BssECI	CCNNGG	2 cut(s)	137, 800
BssMI	GATC	3 cut(s)	87, 143, 397
BssT1I	CCWWGG	2 cut(s)	137, 800
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	7, 470, 495
Bst6I	CTCTTC	2 cut(s)	31, 720
BstAFI	CTTAAG	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	3 cut(s)	837, 883, 939
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	3 cut(s)	394, 713, 718
BstHHI	GCGC	1 cut(s)	963
BstKTI	GATC	3 cut(s)	90, 146, 400
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	87, 143, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 575, 775
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	2 cut(s)	97, 796
BstSCI	CCNGG	2 cut(s)	15, 324
BstSFI	CTRYAG	3 cut(s)	337, 773, 842
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	7 cut(s)	56, 432, 726, 759, 781, 783, 787
BstX2I	RGATCY	2 cut(s)	87, 143
BstYI	RGATCY	2 cut(s)	87, 143
Bsu15I	ATCGAT	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	400
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	394, 713, 718
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	772
CfoI	GCGC	1 cut(s)	963
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	7 cut(s)	119, 165, 174, 342, 364, 460, 512
CviAII	CATG	4 cut(s)	94, 267, 736, 793
CviJI	RGCY	8 cut(s)	107, 295, 413, 445, 482, 547, 772, 841
CviKI_1	RGCY	8 cut(s)	107, 295, 413, 445, 482, 547, 772, 841
CviQI	GTAC	7 cut(s)	119, 165, 174, 342, 364, 460, 512
DdeI	CTNAG	3 cut(s)	837, 883, 939
DpnI	GATC	3 cut(s)	89, 145, 399
DpnII	GATC	3 cut(s)	87, 143, 397
DraI	TTTAAA	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	31, 720
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	2 cut(s)	31, 720
Eco130I	CCWWGG	2 cut(s)	137, 800
Eco31I	GGTCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	137, 800
EcoT22I	ATGCAT	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	137, 800
FaeI	CATG	4 cut(s)	97, 270, 739, 796
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	2 cut(s)	246, 456
FatI	CATG	4 cut(s)	93, 266, 735, 792
FauNDI	CATATG	1 cut(s)	973
Fnu4HI	GCNGC	7 cut(s)	45, 446, 740, 770, 773, 776, 797
FokI	GGATG	3 cut(s)	401, 720, 725
Fsp4HI	GCNGC	7 cut(s)	45, 446, 740, 770, 773, 776, 797
FspBI	CTAG	5 cut(s)	162, 171, 602, 801, 930
GlaI	GCGC	1 cut(s)	962
GluI	GCNGC	7 cut(s)	45, 446, 740, 770, 773, 776, 797
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	963
Hin1II	CATG	4 cut(s)	97, 270, 739, 796
Hin6I	GCGC	1 cut(s)	961
HinP1I	GCGC	1 cut(s)	961
HinfI	GANTC	4 cut(s)	375, 858, 926, 935
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	3 cut(s)	19, 40, 709
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	421, 454, 651, 674
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	5 cut(s)	19, 379, 484, 564, 697
HpyCH4III	ACNGT	3 cut(s)	7, 470, 495
HpyCH4IV	ACGT	2 cut(s)	311, 787
HpyCH4V	TGCA	9 cut(s)	93, 246, 270, 339, 608, 742, 775, 822, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 575, 775
HpyF3I	CTNAG	3 cut(s)	837, 883, 939
HpySE526I	ACGT	2 cut(s)	311, 787
Hsp92II	CATG	4 cut(s)	97, 270, 739, 796
HspAI	GCGC	1 cut(s)	961
Kzo9I	GATC	3 cut(s)	87, 143, 397
LmnI	GCTCC	1 cut(s)	300
Lsp1109I	GCAGC	7 cut(s)	56, 432, 726, 759, 781, 783, 787
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	5 cut(s)	162, 171, 602, 801, 930
MaeII	ACGT	2 cut(s)	311, 787
MaeIII	GTNAC	3 cut(s)	391, 433, 788
MalI	GATC	3 cut(s)	89, 145, 399
MboI	GATC	3 cut(s)	87, 143, 397
MboII	GAAGA	6 cut(s)	48, 73, 138, 384, 712, 737
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	2 cut(s)	87, 143
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	4 cut(s)	278, 652, 657, 995
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	8 cut(s)	199, 225, 368, 389, 536, 721, 755, 892
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	6 cut(s)	84, 186, 680, 875, 1008, 1027
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	772
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	17, 326
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	488, 575, 775
NciI	CCSGG	1 cut(s)	326
NdeI	CATATG	1 cut(s)	973
NdeII	GATC	3 cut(s)	87, 143, 397
NlaIII	CATG	4 cut(s)	97, 270, 739, 796
NlaIV	GGNNCC	2 cut(s)	638, 968
NmuCI	GTSAC	2 cut(s)	433, 788
NsiI	ATGCAT	1 cut(s)	272
NspI	RCATGY	2 cut(s)	97, 796
PaeR7I	CTCGAG	1 cut(s)	359
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	375, 858, 926, 935
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	7 cut(s)	46, 447, 741, 771, 774, 777, 798
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	638, 968
PspXI	VCTCGAGB	1 cut(s)	359
PstI	CTGCAG	2 cut(s)	341, 777
PstNI	CAGNNNCTG	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	87, 143
PvuII	CAGCTG	1 cut(s)	772
RsaI	GTAC	7 cut(s)	120, 166, 175, 343, 365, 461, 513
RsaNI	GTAC	7 cut(s)	119, 165, 174, 342, 364, 460, 512
SaqAI	TTAA	6 cut(s)	84, 186, 680, 875, 1008, 1027
SatI	GCNGC	7 cut(s)	45, 446, 740, 770, 773, 776, 797
Sau3AI	GATC	3 cut(s)	87, 143, 397
ScaI	AGTACT	3 cut(s)	343, 365, 461
ScrFI	CCNGG	2 cut(s)	17, 326
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	3 cut(s)	337, 773, 842
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmiI	ATTTAAAT	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	359, 679
SmoI	CTYRAG	2 cut(s)	359, 679
SpeI	ACTAGT	2 cut(s)	161, 170
Sse9I	AATT	4 cut(s)	278, 652, 657, 995
SsiI	CCGC	1 cut(s)	695
SspMI	CTAG	5 cut(s)	162, 171, 602, 801, 930
StyD4I	CCNGG	2 cut(s)	15, 324
StyI	CCWWGG	2 cut(s)	137, 800
SwaI	ATTTAAAT	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	7, 470, 495
TaiI	ACGT	2 cut(s)	314, 790
TaqI	TCGA	3 cut(s)	360, 400, 565
TasI	AATT	4 cut(s)	278, 652, 657, 995
TatI	WGTACW	5 cut(s)	118, 164, 341, 363, 459
TfiI	GAWTC	4 cut(s)	375, 858, 926, 935
Tru1I	TTAA	6 cut(s)	84, 186, 680, 875, 1008, 1027
Tru9I	TTAA	6 cut(s)	84, 186, 680, 875, 1008, 1027
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	433, 788
TseI	GCWGC	7 cut(s)	44, 445, 739, 769, 772, 775, 796
Tsp45I	GTSAC	2 cut(s)	433, 788
TspDTI	ATGAA	2 cut(s)	74, 729
TspRI	CASTG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	679
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	278, 652
XceI	RCATGY	2 cut(s)	97, 796
XhoI	CTCGAG	1 cut(s)	359
XmaJI	CCTAGG	1 cut(s)	800
XspI	CTAG	5 cut(s)	162, 171, 602, 801, 930
ZrmI	AGTACT	3 cut(s)	343, 365, 461
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.