Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006674.1

Orthogroup ID

OG0018633

Physical Location & Seq

Genomic Coordinates Forward (+)

103068 .. 104045

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006674.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgatagtgagtatccatgataagaaggtgaaaagaagagaagcagcactaaagagaatgaagaaacttggagaccaagtggttaagatctgcatgtccatcgtggccaaactccaagtacacaataagaacaaaccaaggggatcttccaataagacgatggaggatcagaacaaacatgatgatgccaagaccagcagtactagttcactgaacaacagtaaaaatactcatacatccagtacctttatatttaaatgcctgttctgtaatgagaaaactcctctactaaacgcattccatataaagggttgcaaccatttttattgtcccccatgcgttgtcaaattcgtggtgtccaagctccaagatgacatcacgtccattatgtgcccggtatcatactgcagtactggagtgttagacctcgagtactgccgaagaatcctcccgaaggatgttactgatcgatgggaaaaagccttgtccgaaaataataataatgtgactacggggctgccatctgacaagtacttgaactgtcccttcaaggcttgcgcggcacggttgaacttcactgaagtacgggattatctgtacatgatgaaaaagagaaggctactatcttctggattttggagcgggtttaacaccgagaacaagtatttgtgtcctagttgcaacagagaattctgtatcaagtgtagggttccttaccattctgaattcaattgttttttgtatcagaaacttagggtcaatggaggcggtgaagaagggatggtgatgtaccttgcagggatgaaacaatggaagcggtgtccatgctgcaactactatgtgataaaagaggacagcagctgcagcattaactacgtcacatgctggtgtggacatactttctgttactattgtctattaccatcaggtagtcatcaccatgataaaagcaaatgtaaacccatcttcccggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

325

Amino Acids

37.37

Weight (kDa)

9.16

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018633)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267431
rosa_laevigata	RLG00000014006 RLG00000014010
rosa_multiflora	Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii	Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa	Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana	Rw0G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	642
AccII	CGCG	1 cut(s)	560
AciI	CCGC	4 cut(s)	560, 642, 768, 817
AclWI	GGATC	2 cut(s)	151, 174
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	347, 689, 725
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	9 cut(s)	120, 202, 244, 412, 434, 533, 585, 599, 791
AfiI	CCNNNNNNNGG	2 cut(s)	307, 454
AgsI	TTSAA	4 cut(s)	538, 550, 571, 730
AhdI	GACNNNNNGTC	1 cut(s)	379
AhlI	ACTAGT	1 cut(s)	203
AjiI	CACGTC	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	2 cut(s)	364, 861
AluI	AGCT	2 cut(s)	364, 861
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	151, 174
AlwNI	CAGNNNCTG	1 cut(s)	861
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	6 cut(s)	44, 517, 828, 858, 861, 864
ApoI	RAATTY	3 cut(s)	347, 689, 725
AspLEI	GCGC	1 cut(s)	560
AsuC2I	CCSGG	2 cut(s)	395, 971
AsuHPI	GGTGA	4 cut(s)	40, 782, 796, 929
AvaI	CYCGRG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	107
BbvI	GCAGC	6 cut(s)	56, 504, 815, 848, 870, 876
BccI	CCATC	7 cut(s)	107, 154, 465, 529, 775, 931, 971
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciVI	GTATCC	1 cut(s)	23
BcnI	CCSGG	2 cut(s)	395, 971
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	204, 675
BfmI	CTRYAG	2 cut(s)	406, 862
BfuI	GTATCC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	7 cut(s)	45, 518, 561, 829, 859, 862, 865
BlsI	GCNGC	7 cut(s)	46, 519, 562, 830, 860, 863, 866
BmcAI	AGTACT	4 cut(s)	202, 412, 434, 533
Bme1390I	CCNGG	2 cut(s)	395, 971
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	711
BmrFI	CCNGG	2 cut(s)	395, 971
BmsI	GCATC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	395, 971
Bsa29I	ATCGAT	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 454
Bse1I	ACTGG	2 cut(s)	240, 418
BseCI	ATCGAT	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	4 cut(s)	236, 463, 786, 807
BseLI	CCNNNNNNNGG	2 cut(s)	307, 454
BseNI	ACTGG	2 cut(s)	240, 418
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	6 cut(s)	56, 504, 815, 848, 870, 876
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	395, 971
BslFI	GGGAC	2 cut(s)	315, 528
BslI	CCNNNNNNNGG	2 cut(s)	307, 454
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	315, 528
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	4 cut(s)	87, 143, 166, 466
BspACI	CCGC	4 cut(s)	560, 642, 768, 817
BspANI	GGCC	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	711
BspMAI	CTGCAG	2 cut(s)	410, 866
BspPI	GGATC	2 cut(s)	151, 174
BspTNI	GGTCTC	1 cut(s)	66
BsrBI	CCGCTC	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	240, 418
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	4 cut(s)	87, 143, 166, 466
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	221, 542, 567
Bst6I	CTCTTC	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	2 cut(s)	752, 975
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	236, 463, 786, 807
BstFNI	CGCG	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	4 cut(s)	90, 146, 169, 469
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	87, 143, 166, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 864
BstNSI	RCATGY	2 cut(s)	97, 885
BstSCI	CCNGG	2 cut(s)	393, 969
BstSFI	CTRYAG	2 cut(s)	406, 862
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	6 cut(s)	56, 504, 815, 848, 870, 876
BstX2I	RGATCY	2 cut(s)	87, 143
BstYI	RGATCY	2 cut(s)	87, 143
Bsu15I	ATCGAT	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	236, 463, 786, 807
BtsIMutI	CAGTG	2 cut(s)	209, 576
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	861
CfoI	GCGC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	469
Csp6I	GTAC	9 cut(s)	119, 201, 243, 411, 433, 532, 584, 598, 790
CviAII	CATG	8 cut(s)	17, 94, 179, 336, 601, 825, 882, 941
CviJI	RGCY	8 cut(s)	107, 364, 482, 517, 554, 619, 861, 974
CviKI_1	RGCY	8 cut(s)	107, 364, 482, 517, 554, 619, 861, 974
CviQI	GTAC	9 cut(s)	119, 201, 243, 411, 433, 532, 584, 598, 790
DdeI	CTNAG	2 cut(s)	752, 975
DpnI	GATC	4 cut(s)	89, 145, 168, 468
DpnII	GATC	4 cut(s)	87, 143, 166, 466
DraI	TTTAAA	1 cut(s)	256
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	31
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRI	GAATTC	2 cut(s)	689, 725
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	8 cut(s)	20, 97, 182, 339, 604, 828, 885, 944
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	2 cut(s)	315, 528
FatI	CATG	8 cut(s)	16, 93, 178, 335, 600, 824, 881, 940
FauI	CCCGC	1 cut(s)	635
Fnu4HI	GCNGC	7 cut(s)	45, 518, 561, 829, 859, 862, 865
FokI	GGATG	4 cut(s)	223, 470, 793, 814
Fsp4HI	GCNGC	7 cut(s)	45, 518, 561, 829, 859, 862, 865
FspBI	CTAG	2 cut(s)	204, 675
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	7 cut(s)	45, 518, 561, 829, 859, 862, 865
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	395, 971
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	8 cut(s)	20, 97, 182, 339, 604, 828, 885, 944
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HinfI	GANTC	1 cut(s)	444
HpaII	CCGG	2 cut(s)	395, 971
HphI	GGTGA	4 cut(s)	40, 782, 796, 929
Hpy166II	GTNNAC	4 cut(s)	121, 209, 893, 959
Hpy188I	TCNGA	5 cut(s)	171, 490, 526, 724, 747
Hpy188III	TCNNGA	2 cut(s)	451, 630
Hpy8I	GTNNAC	4 cut(s)	121, 209, 893, 959
HpyAV	CCTTC	5 cut(s)	19, 448, 556, 609, 770
HpyCH4III	ACNGT	3 cut(s)	221, 542, 567
HpyCH4IV	ACGT	2 cut(s)	380, 876
HpyCH4V	TGCA	7 cut(s)	93, 315, 408, 681, 797, 831, 864
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 864
HpyF3I	CTNAG	2 cut(s)	752, 975
HpySE526I	ACGT	2 cut(s)	380, 876
Hsp92II	CATG	8 cut(s)	20, 97, 182, 339, 604, 828, 885, 944
HspAI	GCGC	1 cut(s)	558
Kzo9I	GATC	4 cut(s)	87, 143, 166, 466
LmnI	GCTCC	2 cut(s)	369, 639
LpnPI	CCDG	9 cut(s)	208, 253, 275, 399, 408, 615, 783, 871, 912
Lsp1109I	GCAGC	6 cut(s)	56, 504, 815, 848, 870, 876
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	204, 675
MaeII	ACGT	2 cut(s)	380, 876
MaeIII	GTNAC	4 cut(s)	460, 505, 877, 905
MalI	GATC	4 cut(s)	89, 145, 168, 468
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	4 cut(s)	87, 143, 166, 466
MboII	GAAGA	7 cut(s)	48, 73, 138, 453, 618, 785, 958
MfeI	CAATTG	1 cut(s)	730
MflI	RGATCY	2 cut(s)	87, 143
MhlI	GDGCHC	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	4 cut(s)	347, 689, 725, 730
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	6 cut(s)	157, 294, 437, 458, 758, 844
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	4 cut(s)	84, 255, 648, 870
MslI	CAYNNNNRTG	3 cut(s)	183, 886, 939
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	861
MspI	CCGG	2 cut(s)	395, 971
MspR9I	CCNGG	2 cut(s)	395, 971
MunI	CAATTG	1 cut(s)	730
Mva1269I	GAATGC	1 cut(s)	296
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	560, 864
NciI	CCSGG	2 cut(s)	395, 971
NdeII	GATC	4 cut(s)	87, 143, 166, 466
NlaIII	CATG	8 cut(s)	20, 97, 182, 339, 604, 828, 885, 944
NlaIV	GGNNCC	1 cut(s)	711
NmuCI	GTSAC	2 cut(s)	505, 877
NspI	RCATGY	2 cut(s)	97, 885
PaeR7I	CTCGAG	1 cut(s)	428
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	7 cut(s)	46, 519, 562, 830, 860, 863, 866
PspN4I	GGNNCC	1 cut(s)	711
PspXI	VCTCGAGB	1 cut(s)	428
PstI	CTGCAG	2 cut(s)	410, 866
PstNI	CAGNNNCTG	1 cut(s)	861
PsuI	RGATCY	2 cut(s)	87, 143
PvuII	CAGCTG	1 cut(s)	861
RsaI	GTAC	9 cut(s)	120, 202, 244, 412, 434, 533, 585, 599, 791
RsaNI	GTAC	9 cut(s)	119, 201, 243, 411, 433, 532, 584, 598, 790
RseI	CAYNNNNRTG	3 cut(s)	183, 886, 939
SaqAI	TTAA	4 cut(s)	84, 255, 648, 870
SatI	GCNGC	7 cut(s)	45, 518, 561, 829, 859, 862, 865
Sau3AI	GATC	4 cut(s)	87, 143, 166, 466
ScaI	AGTACT	4 cut(s)	202, 412, 434, 533
ScrFI	CCNGG	2 cut(s)	395, 971
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	9 cut(s)	30, 248, 366, 383, 429, 795, 863, 879, 931
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	406, 862
Sfr274I	CTCGAG	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	428
SmiI	ATTTAAAT	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	183, 886, 939
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	4 cut(s)	347, 689, 725, 730
SsiI	CCGC	4 cut(s)	560, 642, 768, 817
SspMI	CTAG	2 cut(s)	204, 675
StyD4I	CCNGG	2 cut(s)	393, 969
StyI	CCWWGG	1 cut(s)	137
SwaI	ATTTAAAT	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	221, 542, 567
TaiI	ACGT	2 cut(s)	383, 879
TaqI	TCGA	2 cut(s)	429, 469
TasI	AATT	4 cut(s)	347, 689, 725, 730
TatI	WGTACW	6 cut(s)	118, 200, 410, 432, 531, 597
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	4 cut(s)	84, 255, 648, 870
Tru9I	TTAA	4 cut(s)	84, 255, 648, 870
TscAI	CASTG	2 cut(s)	216, 583
TseFI	GTSAC	2 cut(s)	505, 877
TseI	GCWGC	6 cut(s)	44, 517, 828, 858, 861, 864
Tsp45I	GTSAC	2 cut(s)	505, 877
TspDTI	ATGAA	3 cut(s)	74, 620, 818
TspRI	CASTG	2 cut(s)	216, 583
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	3 cut(s)	347, 689, 725
XceI	RCATGY	2 cut(s)	97, 885
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	428
XspI	CTAG	2 cut(s)	204, 675
ZrmI	AGTACT	4 cut(s)	202, 412, 434, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.