Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001068.1

Orthogroup ID

OG0018633

Physical Location & Seq

Genomic Coordinates Reverse (-)

30831 .. 31736

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001068.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggtggtgagtatccatgatatgaaggaaaaaagaagagaagcagcactaaagagaatgaagaaatttggagaccaagtggttaagatctgcatgtccatcgtggccaaactccaagtactcaataagaacaaaccaaggggatcttccagtaaaaacactagtacaactagtacctttatatttaaatgccggttctgtgatgaggaaactcctctactaaacgcattccatataaagggttgcaaccatttttattgtcccccatgcattgtcaaattcgttgtgtccaagctccaagatgacatcacgtccattatgtgcccggtatcatactgcagtactggagtgttagacctcgagtactgccgaagaatcctcccgaacgatgtaactgatcgatggaaaaaagccttgtctgaaaataataatgtgactacggggctgccatctgacaagtacttgaactgtcccttcaaggcttgcgcggcacggttgaacttcgctgaagtacgggattatctgtatgtgatggaaaagggagggctactaccttctggatttcggagcaggtttagcaccaagaacaagtatatgtgtcctacttgcaacagagagttttgtatcaagtgtaggattccttaccattccgaattcaattgttttctgtatcagaaacttaaggtcaatgggggcggtgaagaagggatggtgatgtaccttgtagggatgaaacaatggaagaggtgtccatgctgcaactactatgtgataaaagaggacagcagctgcagcatcaactacgtcacatgctggtgtggacatactttctgttactattgtctattaccatcaggtagtcatcaccttgataaaagcaaatgtaaacccatcttcccggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

301

Amino Acids

34.56

Weight (kDa)

9.1

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018633)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267431
rosa_laevigata	RLG00000014006 RLG00000014010
rosa_multiflora	Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii	Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa	Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana	Rw0G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	561
AccII	CGCG	1 cut(s)	488
AciI	CCGC	2 cut(s)	488, 696
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	65, 278, 653
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	8 cut(s)	120, 166, 175, 343, 365, 461, 513, 719
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	466, 478, 499, 658
AhdI	GACNNNNNGTC	1 cut(s)	310
AhlI	ACTAGT	2 cut(s)	161, 170
AjiI	CACGTC	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	2 cut(s)	295, 789
AluI	AGCT	2 cut(s)	295, 789
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	789
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	6 cut(s)	44, 445, 756, 786, 789, 792
ApoI	RAATTY	3 cut(s)	65, 278, 653
AspLEI	GCGC	1 cut(s)	488
AsuC2I	CCSGG	2 cut(s)	326, 899
AsuHPI	GGTGA	4 cut(s)	19, 710, 724, 857
AvaI	CYCGRG	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	107
BbvI	GCAGC	6 cut(s)	56, 432, 743, 776, 798, 804
BccI	CCATC	7 cut(s)	107, 396, 457, 526, 703, 859, 899
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciVI	GTATCC	1 cut(s)	23
BcnI	CCSGG	2 cut(s)	326, 899
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	2 cut(s)	161, 170
BfaI	CTAG	2 cut(s)	162, 171
BfmI	CTRYAG	2 cut(s)	337, 790
BfrI	CTTAAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	7 cut(s)	45, 446, 489, 757, 787, 790, 793
BlsI	GCNGC	7 cut(s)	46, 447, 490, 758, 788, 791, 794
BmcAI	AGTACT	4 cut(s)	120, 343, 365, 461
Bme1390I	CCNGG	2 cut(s)	326, 899
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	326, 899
BmsI	GCATC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	326, 899
Bsa29I	ATCGAT	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	150, 349
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	714, 735
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	150, 349
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	6 cut(s)	56, 432, 743, 776, 798, 804
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	193, 326, 899
BslFI	GGGAC	2 cut(s)	246, 456
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	246, 456
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	87, 143, 397
BspACI	CCGC	2 cut(s)	488, 696
BspANI	GGCC	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	488
BspMAI	CTGCAG	2 cut(s)	341, 794
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	151
BspTI	CTTAAG	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	150, 349
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	87, 143, 397
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	470, 495
Bst6I	CTCTTC	2 cut(s)	31, 737
BstAFI	CTTAAG	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	903
BstF5I	GGATG	2 cut(s)	714, 735
BstFNI	CGCG	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	3 cut(s)	90, 146, 400
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	87, 143, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 576, 792
BstNSI	RCATGY	2 cut(s)	97, 813
BstSCI	CCNGG	2 cut(s)	324, 897
BstSFI	CTRYAG	2 cut(s)	337, 790
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	6 cut(s)	56, 432, 743, 776, 798, 804
BstX2I	RGATCY	2 cut(s)	87, 143
BstYI	RGATCY	2 cut(s)	87, 143
Bsu15I	ATCGAT	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	400
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	714, 735
BveI	ACCTGC	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	789
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	8 cut(s)	119, 165, 174, 342, 364, 460, 512, 718
CviAII	CATG	5 cut(s)	17, 94, 267, 753, 810
CviJI	RGCY	8 cut(s)	107, 295, 413, 445, 482, 547, 789, 902
CviKI_1	RGCY	8 cut(s)	107, 295, 413, 445, 482, 547, 789, 902
CviQI	GTAC	8 cut(s)	119, 165, 174, 342, 364, 460, 512, 718
DdeI	CTNAG	1 cut(s)	903
DpnI	GATC	3 cut(s)	89, 145, 399
DpnII	GATC	3 cut(s)	87, 143, 397
DraI	TTTAAA	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	31, 737
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	2 cut(s)	31, 737
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	5 cut(s)	20, 97, 270, 756, 813
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	2 cut(s)	246, 456
FatI	CATG	5 cut(s)	16, 93, 266, 752, 809
Fnu4HI	GCNGC	7 cut(s)	45, 446, 489, 757, 787, 790, 793
FokI	GGATG	2 cut(s)	721, 742
Fsp4HI	GCNGC	7 cut(s)	45, 446, 489, 757, 787, 790, 793
FspBI	CTAG	2 cut(s)	162, 171
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	7 cut(s)	45, 446, 489, 757, 787, 790, 793
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	3 cut(s)	193, 326, 899
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	20, 97, 270, 756, 813
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	2 cut(s)	375, 637
HpaII	CCGG	3 cut(s)	193, 326, 899
HphI	GGTGA	4 cut(s)	19, 710, 724, 857
Hpy166II	GTNNAC	2 cut(s)	821, 887
Hpy188I	TCNGA	5 cut(s)	421, 454, 567, 652, 675
Hpy188III	TCNNGA	2 cut(s)	382, 558
Hpy8I	GTNNAC	2 cut(s)	821, 887
HpyAV	CCTTC	4 cut(s)	19, 484, 564, 698
HpyCH4III	ACNGT	2 cut(s)	470, 495
HpyCH4IV	ACGT	2 cut(s)	311, 804
HpyCH4V	TGCA	7 cut(s)	93, 246, 270, 339, 609, 759, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 576, 792
HpyF3I	CTNAG	1 cut(s)	903
HpySE526I	ACGT	2 cut(s)	311, 804
Hsp92II	CATG	5 cut(s)	20, 97, 270, 756, 813
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	87, 143, 397
LmnI	GCTCC	2 cut(s)	300, 567
LpnPI	CCDG	8 cut(s)	163, 206, 330, 339, 543, 556, 799, 840
Lsp1109I	GCAGC	6 cut(s)	56, 432, 743, 776, 798, 804
LweI	GCATC	1 cut(s)	804
MaeI	CTAG	2 cut(s)	162, 171
MaeII	ACGT	2 cut(s)	311, 804
MaeIII	GTNAC	4 cut(s)	391, 433, 805, 833
MalI	GATC	3 cut(s)	89, 145, 399
MboI	GATC	3 cut(s)	87, 143, 397
MboII	GAAGA	7 cut(s)	48, 73, 138, 384, 713, 754, 886
MfeI	CAATTG	1 cut(s)	658
MflI	RGATCY	2 cut(s)	87, 143
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	4 cut(s)	65, 278, 653, 658
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	7 cut(s)	199, 225, 368, 389, 536, 738, 772
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	3 cut(s)	84, 186, 681
MslI	CAYNNNNRTG	1 cut(s)	814
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	789
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	3 cut(s)	193, 326, 899
MspR9I	CCNGG	2 cut(s)	326, 899
MunI	CAATTG	1 cut(s)	658
Mva1269I	GAATGC	1 cut(s)	227
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	3 cut(s)	488, 576, 792
NciI	CCSGG	2 cut(s)	326, 899
NdeII	GATC	3 cut(s)	87, 143, 397
NlaIII	CATG	5 cut(s)	20, 97, 270, 756, 813
NmuCI	GTSAC	2 cut(s)	433, 805
NsiI	ATGCAT	1 cut(s)	272
NspI	RCATGY	2 cut(s)	97, 813
PaeR7I	CTCGAG	1 cut(s)	359
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	375, 637
PkrI	GCNGC	7 cut(s)	46, 447, 490, 758, 788, 791, 794
PspXI	VCTCGAGB	1 cut(s)	359
PstI	CTGCAG	2 cut(s)	341, 794
PstNI	CAGNNNCTG	1 cut(s)	789
PsuI	RGATCY	2 cut(s)	87, 143
PvuII	CAGCTG	1 cut(s)	789
RsaI	GTAC	8 cut(s)	120, 166, 175, 343, 365, 461, 513, 719
RsaNI	GTAC	8 cut(s)	119, 165, 174, 342, 364, 460, 512, 718
RseI	CAYNNNNRTG	1 cut(s)	814
SaqAI	TTAA	3 cut(s)	84, 186, 681
SatI	GCNGC	7 cut(s)	45, 446, 489, 757, 787, 790, 793
Sau3AI	GATC	3 cut(s)	87, 143, 397
ScaI	AGTACT	4 cut(s)	120, 343, 365, 461
ScrFI	CCNGG	2 cut(s)	326, 899
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	804
SfcI	CTRYAG	2 cut(s)	337, 790
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmiI	ATTTAAAT	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	814
SmlI	CTYRAG	2 cut(s)	359, 680
SmoI	CTYRAG	2 cut(s)	359, 680
SpeI	ACTAGT	2 cut(s)	161, 170
Sse9I	AATT	4 cut(s)	65, 278, 653, 658
SsiI	CCGC	2 cut(s)	488, 696
SspMI	CTAG	2 cut(s)	162, 171
StyD4I	CCNGG	2 cut(s)	324, 897
StyI	CCWWGG	1 cut(s)	137
SwaI	ATTTAAAT	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	470, 495
TaiI	ACGT	2 cut(s)	314, 807
TaqI	TCGA	2 cut(s)	360, 400
TasI	AATT	4 cut(s)	65, 278, 653, 658
TatI	WGTACW	5 cut(s)	118, 164, 341, 363, 459
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	375, 637
Tru1I	TTAA	3 cut(s)	84, 186, 681
Tru9I	TTAA	3 cut(s)	84, 186, 681
TseFI	GTSAC	2 cut(s)	433, 805
TseI	GCWGC	6 cut(s)	44, 445, 756, 786, 789, 792
Tsp45I	GTSAC	2 cut(s)	433, 805
TspDTI	ATGAA	3 cut(s)	38, 74, 746
Vha464I	CTTAAG	1 cut(s)	680
XapI	RAATTY	3 cut(s)	65, 278, 653
XceI	RCATGY	2 cut(s)	97, 813
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	2 cut(s)	162, 171
ZrmI	AGTACT	4 cut(s)	120, 343, 365, 461
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.