Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018633

Physical Location & Seq

Genomic Coordinates Reverse (-)

49041223 .. 49042081

Gene Structure 859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGATGATCAGAACAAACCAAGGGGATCGTCTAACCAGCCAATGGAGGATCAGAACAAACCAAGGGGATCTTCCAATCAGACGATGGAGGATCAGAACAAACATCATGATGCCAAGACCAGCAATACTAGTTCACTGAACAACAGTAATAATACTAGTACAACTGATGACATCTTGTTCATTATGTGCCCGGTATCATACTGCAGTAGTGGAGTGTTAGACCTCGAGTACTGCCGGAGAATCCTCCCGAAGGATGTAACTGATCGATGGGAAAAAGCCTCGTCTGATGAAAATAATAATAATGATGATAATGTGACTACGGGGCCTCCATCTGACAAGTACTTGAACCGTCCCTTCAAGTCTTGCGTGGCACGGTTGAACTTCGCTGAAGTACGGGATTATCTGCACATGATGAAAAAGGGAAGGCTACTACCTTCTGGATTTCGGAGGGGGTTTAGCATCGAGAATAAGTATTTGTGTCCTATTTGCAACAGAGTGTTTTCTATCAATTGTAGGGTTCCTTACCATTCCGAATTCAATTGTTTTTTGTATCAGAAACTTAAGGTCAATGGGGGCGGTGAAGAAGGGATGGTAATGTACCTTTCAGGGATGAAACAATCCATGCTGCAACTACTATGTGATAAAAGAGGACAGCAGCTGCAGCATCAACTACGTCACATGCTGGTGTGGATATACTTTCTCTTACTATTGTCTATTACCATCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

242

Amino Acids

27.91

Weight (kDa)

8.68

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018633)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267431
rosa_laevigata	RLG00000014006 RLG00000014010
rosa_multiflora	Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii	Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa	Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana	Rw0G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	43
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	4 cut(s)	34, 57, 76, 99
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	5 cut(s)	160, 230, 341, 393, 599
AfiI	CCNNNNNNNGG	2 cut(s)	43, 250
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	4 cut(s)	346, 358, 379, 538
AhlI	ACTAGT	2 cut(s)	128, 155
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	1 cut(s)	658
AluI	AGCT	1 cut(s)	658
AlwI	GGATC	4 cut(s)	34, 57, 76, 99
AlwNI	CAGNNNCTG	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	4 cut(s)	625, 655, 658, 661
ApoI	RAATTY	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	191
BbvI	GCAGC	4 cut(s)	612, 645, 667, 673
BccI	CCATC	5 cut(s)	79, 261, 337, 583, 728
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	191
BcuI	ACTAGT	2 cut(s)	128, 155
BfaI	CTAG	2 cut(s)	129, 156
BfmI	CTRYAG	2 cut(s)	202, 659
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	4 cut(s)	626, 656, 659, 662
BlsI	GCNGC	4 cut(s)	627, 657, 660, 663
BmcAI	AGTACT	2 cut(s)	230, 341
Bme1390I	CCNGG	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	324, 519
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	3 cut(s)	100, 468, 673
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	20, 62
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 250
BseCI	ATCGAT	1 cut(s)	265
BseDI	CCNNGG	2 cut(s)	20, 62
BseGI	GGATG	4 cut(s)	10, 259, 594, 615
BseLI	CCNNNNNNNGG	2 cut(s)	43, 250
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	4 cut(s)	612, 645, 667, 673
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	191, 235
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	43, 250
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
BspACI	CCGC	1 cut(s)	576
BspANI	GGCC	1 cut(s)	325
BspDI	ATCGAT	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	324, 519
BspMAI	CTGCAG	2 cut(s)	206, 663
BspPI	GGATC	4 cut(s)	34, 57, 76, 99
BspTI	CTTAAG	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	20, 62
BssMI	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
BssT1I	CCWWGG	2 cut(s)	20, 62
Bst4CI	ACNGT	3 cut(s)	146, 350, 375
BstAFI	CTTAAG	1 cut(s)	560
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	10, 259, 594, 615
BstKTI	GATC	6 cut(s)	10, 29, 52, 71, 94, 265
BstMBI	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	661
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	2 cut(s)	202, 659
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	4 cut(s)	612, 645, 667, 673
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	325
BsuTUI	ATCGAT	1 cut(s)	265
BtsCI	GGATG	4 cut(s)	10, 259, 594, 615
BtsIMutI	CAGTG	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	265
Csp6I	GTAC	5 cut(s)	159, 229, 340, 392, 598
CviAII	CATG	4 cut(s)	107, 409, 622, 679
CviJI	RGCY	5 cut(s)	40, 278, 325, 427, 658
CviKI_1	RGCY	5 cut(s)	40, 278, 325, 427, 658
CviQI	GTAC	5 cut(s)	159, 229, 340, 392, 598
DpnI	GATC	6 cut(s)	9, 28, 51, 70, 93, 264
DpnII	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
Eco130I	CCWWGG	2 cut(s)	20, 62
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	20, 62
ErhI	CCWWGG	2 cut(s)	20, 62
FaeI	CATG	4 cut(s)	110, 412, 625, 682
FaiI	YATR	8 cut(s)	108, 185, 199, 410, 623, 637, 680, 694
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	4 cut(s)	106, 408, 621, 678
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	626, 656, 659, 662
FokI	GGATG	4 cut(s)	17, 266, 601, 622
Fsp4HI	GCNGC	4 cut(s)	626, 656, 659, 662
FspBI	CTAG	2 cut(s)	129, 156
GluI	GCNGC	4 cut(s)	626, 656, 659, 662
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	2 cut(s)	191, 235
Hin1II	CATG	4 cut(s)	110, 412, 625, 682
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	2 cut(s)	191, 235
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	9 cut(s)	12, 54, 81, 96, 286, 334, 447, 532, 555
Hpy188III	TCNNGA	4 cut(s)	107, 247, 438, 463
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	244, 364, 417, 444, 578
HpyCH4III	ACNGT	3 cut(s)	146, 350, 375
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	5 cut(s)	204, 406, 489, 628, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	661
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	4 cut(s)	110, 412, 625, 682
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
LpnPI	CCDG	8 cut(s)	50, 133, 204, 248, 423, 591, 668, 709
Lsp1109I	GCAGC	4 cut(s)	612, 645, 667, 673
LweI	GCATC	3 cut(s)	100, 468, 673
MaeI	CTAG	2 cut(s)	129, 156
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	3 cut(s)	256, 313, 674
MalI	GATC	6 cut(s)	9, 28, 51, 70, 93, 264
MboI	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
MboII	GAAGA	2 cut(s)	63, 593
MfeI	CAATTG	2 cut(s)	508, 538
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	508, 533, 538
MnlI	CCTC	8 cut(s)	40, 82, 233, 254, 289, 336, 441, 641
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	2 cut(s)	108, 683
MspA1I	CMGCKG	1 cut(s)	658
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	191, 235
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	2 cut(s)	508, 538
MwoI	GCNNNNNNNGC	1 cut(s)	661
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
NlaIII	CATG	4 cut(s)	110, 412, 625, 682
NlaIV	GGNNCC	2 cut(s)	324, 519
NmuCI	GTSAC	2 cut(s)	313, 674
NspI	RCATGY	1 cut(s)	682
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	627, 657, 660, 663
PspN4I	GGNNCC	2 cut(s)	324, 519
PspPI	GGNCC	1 cut(s)	323
PspXI	VCTCGAGB	1 cut(s)	224
PstI	CTGCAG	2 cut(s)	206, 663
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	5 cut(s)	160, 230, 341, 393, 599
RsaNI	GTAC	5 cut(s)	159, 229, 340, 392, 598
RseI	CAYNNNNRTG	2 cut(s)	108, 683
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	4 cut(s)	626, 656, 659, 662
Sau3AI	GATC	6 cut(s)	7, 26, 49, 68, 91, 262
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	2 cut(s)	230, 341
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	7 cut(s)	225, 436, 567, 603, 660, 676, 728
SfaNI	GCATC	3 cut(s)	100, 468, 673
SfcI	CTRYAG	2 cut(s)	202, 659
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	2 cut(s)	108, 683
SmlI	CTYRAG	2 cut(s)	224, 560
SmoI	CTYRAG	2 cut(s)	224, 560
SpeI	ACTAGT	2 cut(s)	128, 155
Sse9I	AATT	3 cut(s)	508, 533, 538
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	2 cut(s)	129, 156
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	20, 62
TaaI	ACNGT	3 cut(s)	146, 350, 375
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	3 cut(s)	225, 265, 462
TasI	AATT	3 cut(s)	508, 533, 538
TatI	WGTACW	3 cut(s)	158, 228, 339
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	313, 674
TseI	GCWGC	4 cut(s)	625, 655, 658, 661
Tsp45I	GTSAC	2 cut(s)	313, 674
TspDTI	ATGAA	4 cut(s)	169, 303, 428, 626
TspRI	CASTG	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	224
XspI	CTAG	2 cut(s)	129, 156
ZrmI	AGTACT	2 cut(s)	230, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.