RLG00000014006

In Between Ring fingers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018633
Physical Location & Seq
Forward (+)
45530534 .. 45531595
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014006

Sequence Viewer

Length: 1062 bp
ATGACGGTGAGTATCCAGGATAAGAAGGTGAAAAGAAGAGAAGCAGCACTAAAGAGAATGAAGAAACTTGGAGACCAAGTGGTTAAGTTCTGCATGTCCATCGTGGACAAACTCCAAGGACACAGTAAGAACAAACCAAGGGGATCGTCCAATCAAACAATGGATGATCAGAACAAACCAAGGGGATCGTCCAACCAGACAATGGAGGACAAACCAAGGGGATCTTCCAATAAGACGATGGAGGATCAGAACAAACATGATGATGCCAAGACCAGCAATACTAGTTCACTGAACAATAAAAATACTAGTGCAACCAGTACCTTCATATTTAAATGCCAGTTCTGCCATGAGGAAACTCCTCTACTAAACGCATTCCATATAAAGGGTTGCAACCATTTTTATTGTCCCCCATGCATTGTCAAATTCGTGGTGTCCAAGCTCCAAGATGACATCACGTCCATTATGTGCCCGGTATCATATTGCAGTACTGGAGTGTTAGACCTCGAGTACTGCCGGAGAATCCTCCCGAAGGATGTAACTGATCGATGGGAAAAAGCCTTGTCCGAAAATAATAATAATGTTAATAATGTGACTACGGGGCTGCCATCTGACAAGTACTTGAACTGTCCCTTCAAGGCTTGCGCGGCAAGGTTGAACTTCGCTGAAGTACGGGATTATCTGCACATGATGAAGAAGGGAAGGCTACTACCTTCTGGATTTCGGAGCGGGTCTAGCATTGAGAACAAGTATTTGTGTCCTAGTTGCAACAGAGAGTTTTGTGTCAAGTGTAGGGTTCCTTACCATTCCGAATTCAGTTGTTTCTTGTATCAGAAACTAAAGGTCAATGGGGGCGGTGAAGAAGGGATGGTGATGCACCTTGCAGGGATGAAACAATGGAAGCGGTGTCCATGCTGCAACTACTATGTGATAAAAGAGGACAGCAGCTGCAGCATCAACTACGTCACATGCTGGTGTGGATTTACTTTCTGTTACTATTGTCTATTACCATCAGGTAGTCATCAGCATGATAAAGGCAAATGTAAACCCATTTTCCCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR

Protein Analysis

354

Amino Acids

40.12

Weight (kDa)

9.04

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018633)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267431
rosa_laevigata RLG00000014006 RLG00000014010
rosa_multiflora Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana Rw0G010740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 726
AccII CGCG 1 cut(s) 644
AciI CCGC 4 cut(s) 644, 726, 852, 901
AclWI GGATC 4 cut(s) 151, 193, 229, 252
AcsI RAATTY 2 cut(s) 422, 809
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 5 cut(s) 319, 487, 509, 617, 669
AfiI CCNNNNNNNGG 3 cut(s) 202, 382, 529
AgsI TTSAA 3 cut(s) 622, 634, 655
AhdI GACNNNNNGTC 1 cut(s) 454
AhlI ACTAGT 2 cut(s) 281, 305
AjiI CACGTC 1 cut(s) 456
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 2 cut(s) 439, 945
AluI AGCT 2 cut(s) 439, 945
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 4 cut(s) 151, 193, 229, 252
AlwNI CAGNNNCTG 1 cut(s) 945
Ama87I CYCGRG 1 cut(s) 503
ApeKI GCWGC 6 cut(s) 44, 601, 912, 942, 945, 948
ApoI RAATTY 2 cut(s) 422, 809
AspLEI GCGC 1 cut(s) 644
AsuC2I CCSGG 2 cut(s) 470, 1055
AsuHPI GGTGA 4 cut(s) 19, 40, 866, 880
AvaI CYCGRG 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 470
BbvI GCAGC 6 cut(s) 56, 588, 899, 932, 954, 960
BccI CCATC 6 cut(s) 107, 232, 540, 613, 859, 1015
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 17
BciVI GTATCC 1 cut(s) 23
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 2 cut(s) 470, 1055
BcoDI GTCTC 1 cut(s) 66
BcuI ACTAGT 2 cut(s) 281, 305
BfaI CTAG 4 cut(s) 282, 306, 732, 759
BfmI CTRYAG 1 cut(s) 946
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 7 cut(s) 45, 602, 645, 913, 943, 946, 949
BlsI GCNGC 7 cut(s) 46, 603, 646, 914, 944, 947, 950
BmcAI AGTACT 3 cut(s) 487, 509, 617
Bme1390I CCNGG 3 cut(s) 17, 470, 1055
BmeRI GACNNNNNGTC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 503
BmgBI CACGTC 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 3 cut(s) 17, 470, 1055
BmsI GCATC 3 cut(s) 253, 861, 960
BpmI CTGGAG 1 cut(s) 510
BpuMI CCSGG 2 cut(s) 470, 1055
Bsa29I ATCGAT 1 cut(s) 544
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 4 cut(s) 115, 137, 179, 215
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 382, 529
Bse1I ACTGG 3 cut(s) 315, 337, 493
BseBI CCWGG 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 544
BseDI CCNNGG 4 cut(s) 115, 137, 179, 215
BseGI GGATG 4 cut(s) 169, 538, 870, 891
BseLI CCNNNNNNNGG 3 cut(s) 202, 382, 529
BseNI ACTGG 3 cut(s) 315, 337, 493
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 470
BseXI GCAGC 6 cut(s) 56, 588, 899, 932, 954, 960
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 644
BshVI ATCGAT 1 cut(s) 544
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 3 cut(s) 470, 514, 1055
BslFI GGGAC 2 cut(s) 390, 612
BslI CCNNNNNNNGG 3 cut(s) 202, 382, 529
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 390, 612
BsmI GAATGC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 6 cut(s) 143, 166, 185, 221, 244, 541
BspACI CCGC 4 cut(s) 644, 726, 852, 901
BspDI ATCGAT 1 cut(s) 544
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 1 cut(s) 795
BspMAI CTGCAG 1 cut(s) 950
BspPI GGATC 4 cut(s) 151, 193, 229, 252
BspTNI GGTCTC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 726
BsrI ACTGG 3 cut(s) 315, 337, 493
BssECI CCNNGG 4 cut(s) 115, 137, 179, 215
BssMI GATC 6 cut(s) 143, 166, 185, 221, 244, 541
BssT1I CCWWGG 4 cut(s) 115, 137, 179, 215
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 3 cut(s) 7, 125, 626
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 1 cut(s) 1059
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 4 cut(s) 169, 538, 870, 891
BstFNI CGCG 1 cut(s) 644
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 6 cut(s) 146, 169, 188, 224, 247, 544
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 6 cut(s) 143, 166, 185, 221, 244, 541
BstMWI GCNNNNNNNGC 4 cut(s) 342, 644, 732, 948
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 97, 969
BstSCI CCNGG 3 cut(s) 15, 468, 1053
BstSFI CTRYAG 1 cut(s) 946
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 6 cut(s) 56, 588, 899, 932, 954, 960
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 544
BsuI GTATCC 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 544
BtrI CACGTC 1 cut(s) 456
BtsCI GGATG 4 cut(s) 169, 538, 870, 891
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 640
CaiI CAGNNNCTG 1 cut(s) 945
CfoI GCGC 1 cut(s) 644
ClaI ATCGAT 1 cut(s) 544
Csp6I GTAC 5 cut(s) 318, 486, 508, 616, 668
CviAII CATG 8 cut(s) 94, 257, 347, 411, 685, 909, 966, 1025
CviJI RGCY 7 cut(s) 439, 557, 601, 638, 703, 945, 1058
CviKI_1 RGCY 7 cut(s) 439, 557, 601, 638, 703, 945, 1058
CviQI GTAC 5 cut(s) 318, 486, 508, 616, 668
DdeI CTNAG 1 cut(s) 1059
DpnI GATC 6 cut(s) 145, 168, 187, 223, 246, 543
DpnII GATC 6 cut(s) 143, 166, 185, 221, 244, 541
DraI TTTAAA 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 31
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 4 cut(s) 115, 137, 179, 215
Eco31I GGTCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 4 cut(s) 115, 137, 179, 215
EcoT22I ATGCAT 1 cut(s) 416
ErhI CCWWGG 4 cut(s) 115, 137, 179, 215
FaeI CATG 8 cut(s) 97, 260, 350, 414, 688, 912, 969, 1028
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FaqI GGGAC 2 cut(s) 390, 612
FatI CATG 8 cut(s) 93, 256, 346, 410, 684, 908, 965, 1024
FauI CCCGC 1 cut(s) 719
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 7 cut(s) 45, 602, 645, 913, 943, 946, 949
FokI GGATG 4 cut(s) 176, 545, 877, 898
Fsp4HI GCNGC 7 cut(s) 45, 602, 645, 913, 943, 946, 949
FspBI CTAG 4 cut(s) 282, 306, 732, 759
GlaI GCGC 1 cut(s) 643
GluI GCNGC 7 cut(s) 45, 602, 645, 913, 943, 946, 949
GsuI CTGGAG 1 cut(s) 510
HapII CCGG 3 cut(s) 470, 514, 1055
HhaI GCGC 1 cut(s) 644
Hin1II CATG 8 cut(s) 97, 260, 350, 414, 688, 912, 969, 1028
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HinfI GANTC 1 cut(s) 519
HpaII CCGG 3 cut(s) 470, 514, 1055
HphI GGTGA 4 cut(s) 19, 40, 866, 880
Hpy166II GTNNAC 3 cut(s) 106, 287, 1043
Hpy188I TCNGA 7 cut(s) 171, 249, 565, 610, 723, 808, 831
Hpy188III TCNNGA 2 cut(s) 526, 714
Hpy8I GTNNAC 3 cut(s) 106, 287, 1043
HpyAV CCTTC 8 cut(s) 19, 331, 523, 640, 688, 693, 720, 854
HpyCH4III ACNGT 3 cut(s) 7, 125, 626
HpyCH4IV ACGT 2 cut(s) 455, 960
HpyF10VI GCNNNNNNNGC 4 cut(s) 342, 644, 732, 948
HpyF3I CTNAG 1 cut(s) 1059
HpySE526I ACGT 2 cut(s) 455, 960
Hsp92II CATG 8 cut(s) 97, 260, 350, 414, 688, 912, 969, 1028
HspAI GCGC 1 cut(s) 642
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 6 cut(s) 143, 166, 185, 221, 244, 541
LmnI GCTCC 2 cut(s) 444, 723
Lsp1109I GCAGC 6 cut(s) 56, 588, 899, 932, 954, 960
LweI GCATC 3 cut(s) 253, 861, 960
MaeI CTAG 4 cut(s) 282, 306, 732, 759
MaeII ACGT 2 cut(s) 455, 960
MaeIII GTNAC 4 cut(s) 535, 589, 961, 989
MalI GATC 6 cut(s) 145, 168, 187, 223, 246, 543
MbiI CCGCTC 1 cut(s) 726
MboI GATC 6 cut(s) 143, 166, 185, 221, 244, 541
MboII GAAGA 5 cut(s) 48, 73, 216, 703, 869
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 2 cut(s) 422, 809
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 199, 235, 343, 369, 512, 533, 928
Mph1103I ATGCAT 1 cut(s) 416
MseI TTAA 3 cut(s) 84, 330, 582
MslI CAYNNNNRTG 3 cut(s) 261, 970, 1023
MspA1I CMGCKG 1 cut(s) 945
MspI CCGG 3 cut(s) 470, 514, 1055
MspR9I CCNGG 3 cut(s) 17, 470, 1055
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 4 cut(s) 342, 644, 732, 948
NciI CCSGG 2 cut(s) 470, 1055
NdeII GATC 6 cut(s) 143, 166, 185, 221, 244, 541
NlaIII CATG 8 cut(s) 97, 260, 350, 414, 688, 912, 969, 1028
NlaIV GGNNCC 1 cut(s) 795
NmuCI GTSAC 2 cut(s) 589, 961
NsiI ATGCAT 1 cut(s) 416
NspI RCATGY 2 cut(s) 97, 969
PaeR7I CTCGAG 1 cut(s) 503
PctI GAATGC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 519
PflMI CCANNNNNTGG 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 7 cut(s) 46, 603, 646, 914, 944, 947, 950
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 795
PspXI VCTCGAGB 1 cut(s) 503
PstI CTGCAG 1 cut(s) 950
PstNI CAGNNNCTG 1 cut(s) 945
PsuI RGATCY 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 945
RsaI GTAC 5 cut(s) 319, 487, 509, 617, 669
RsaNI GTAC 5 cut(s) 318, 486, 508, 616, 668
RseI CAYNNNNRTG 3 cut(s) 261, 970, 1023
SaqAI TTAA 3 cut(s) 84, 330, 582
SatI GCNGC 7 cut(s) 45, 602, 645, 913, 943, 946, 949
Sau3AI GATC 6 cut(s) 143, 166, 185, 221, 244, 541
ScaI AGTACT 3 cut(s) 487, 509, 617
ScrFI CCNGG 3 cut(s) 17, 470, 1055
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 3 cut(s) 253, 861, 960
SfcI CTRYAG 1 cut(s) 946
Sfr274I CTCGAG 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 503
SmiI ATTTAAAT 1 cut(s) 331
SmiMI CAYNNNNRTG 3 cut(s) 261, 970, 1023
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SpeI ACTAGT 2 cut(s) 281, 305
Sse9I AATT 2 cut(s) 422, 809
SsiI CCGC 4 cut(s) 644, 726, 852, 901
SspMI CTAG 4 cut(s) 282, 306, 732, 759
StyD4I CCNGG 3 cut(s) 15, 468, 1053
StyI CCWWGG 4 cut(s) 115, 137, 179, 215
SwaI ATTTAAAT 1 cut(s) 331
TaaI ACNGT 3 cut(s) 7, 125, 626
TaiI ACGT 2 cut(s) 458, 963
TaqI TCGA 2 cut(s) 504, 544
TasI AATT 2 cut(s) 422, 809
TatI WGTACW 3 cut(s) 485, 507, 615
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 1 cut(s) 519
Tru1I TTAA 3 cut(s) 84, 330, 582
Tru9I TTAA 3 cut(s) 84, 330, 582
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 2 cut(s) 589, 961
TseI GCWGC 6 cut(s) 44, 601, 912, 942, 945, 948
Tsp45I GTSAC 2 cut(s) 589, 961
TspDTI ATGAA 4 cut(s) 74, 313, 704, 902
TspRI CASTG 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 202
XagI CCTNNNNNAGG 1 cut(s) 527
XapI RAATTY 2 cut(s) 422, 809
XceI RCATGY 2 cut(s) 97, 969
XcmI CCANNNNNNNNNTGG 3 cut(s) 157, 199, 235
XhoI CTCGAG 1 cut(s) 503
XspI CTAG 4 cut(s) 282, 306, 732, 759
ZrmI AGTACT 3 cut(s) 487, 509, 617
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.