Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018633

Physical Location & Seq

Genomic Coordinates Forward (+)

45591188 .. 45592174

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014010

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATAGTGAGTATCCATGATAAGAATGTGAAAAGAAGAGAAGCAGCACTAAAGAGAATGAAGAAACTTGGAGACCAAGTGGTTAAGATCTGCATGTCCATCGTGGCCAAACTCCAAGTACACAATAAGAACAAACCAAGGGGATCTTCCAATAAGACGATGGAGGATCAGAACAAACATGATGATGCCAAGACCAGCAGTACTAGTTCACTGAACAACAGTAAAAATACTAATACATCCAGCACCTTTATATTTAAATGCCTGTTCTGTAATGAGAAAACTCCTCTACTAAACGCATTCCATATAAAGGGTTGCAACCATTTTTATTGTCCCCCATGCGTTGTCAAATTCGTGGTGTCCAAGCTCCAAGATGACATCACGTCCATTATGTGCCCGGTATCATACTGCAGTACTGGAGTGTTAGACCTCGAGTACTGCCGAAGAATCCTCCCGAAGGATGTAACTGATCGATGGGAAAAAGCCTTGTCTGAAAATAATAATAATAATAATAATGTGACTACGGGGCTGCCATCTGACAAATACTTGAACTGTCCCTTCAAGGCTTGTGCGGCACGGTTGAACTTCGCTGAAGTACGGGATTATCTGTACATGATGACAAAGAGAAAGCTACTACCTTCTGGATTTTGGAGCGGGTTTAACACCGAGAACAAGTATATGTGTCCTAGTTGCAACAGAGAATTTTGTATCAAGTGTAGGGTTCCTTACCATTCTGAATTCAATTGTTTTTTGTATCAGAAACTTAAGGTCAATGGAGGCGGTGAAGAAGGGATGGTGATGTACCTTGCAGGGATGAAACAATGGAAGCGGTGTCCATGCTGCAACTACTATGTGATAAAAGAGGACAGCAGCTGCAGCATTAACTACGTCACATGCTGGTGTGGACATACTTTCTGTTACTATTGTCTATTACCATCAGGTAGTCATCACCATGATAAAAGCAAATGTAAACCCATCTTCCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

329

Amino Acids

37.59

Weight (kDa)

9.08

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018633)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267431
rosa_laevigata	RLG00000014006 RLG00000014010
rosa_multiflora	Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii	Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa	Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana	Rw0G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	651
AciI	CCGC	4 cut(s)	569, 651, 777, 826
AclWI	GGATC	2 cut(s)	151, 174
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	347, 698, 734
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	7 cut(s)	120, 202, 412, 434, 594, 608, 800
AfiI	CCNNNNNNNGG	2 cut(s)	307, 454
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	4 cut(s)	547, 559, 580, 739
AhdI	GACNNNNNGTC	1 cut(s)	379
AhlI	ACTAGT	1 cut(s)	203
AjiI	CACGTC	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	3 cut(s)	364, 628, 870
AluI	AGCT	3 cut(s)	364, 628, 870
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	151, 174
AlwNI	CAGNNNCTG	1 cut(s)	870
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	6 cut(s)	44, 526, 837, 867, 870, 873
ApoI	RAATTY	3 cut(s)	347, 698, 734
AsuC2I	CCSGG	2 cut(s)	395, 980
AsuHPI	GGTGA	3 cut(s)	791, 805, 938
AvaI	CYCGRG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	107
BbvI	GCAGC	6 cut(s)	56, 513, 824, 857, 879, 885
BccI	CCATC	7 cut(s)	107, 154, 465, 538, 784, 940, 980
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciVI	GTATCC	1 cut(s)	23
BcnI	CCSGG	2 cut(s)	395, 980
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	204, 684
BfmI	CTRYAG	2 cut(s)	406, 871
BfrI	CTTAAG	1 cut(s)	761
BfuI	GTATCC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	7 cut(s)	45, 527, 570, 838, 868, 871, 874
BlsI	GCNGC	7 cut(s)	46, 528, 571, 839, 869, 872, 875
BmcAI	AGTACT	3 cut(s)	202, 412, 434
Bme1390I	CCNGG	2 cut(s)	395, 980
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	720
BmrFI	CCNGG	2 cut(s)	395, 980
BmsI	GCATC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	395, 980
Bsa29I	ATCGAT	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 454
Bse1I	ACTGG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	4 cut(s)	236, 463, 795, 816
BseLI	CCNNNNNNNGG	2 cut(s)	307, 454
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	6 cut(s)	56, 513, 824, 857, 879, 885
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	395, 980
BslFI	GGGAC	2 cut(s)	315, 537
BslI	CCNNNNNNNGG	2 cut(s)	307, 454
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	315, 537
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	87, 143, 166, 466
BspACI	CCGC	4 cut(s)	569, 651, 777, 826
BspANI	GGCC	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	720
BspMAI	CTGCAG	2 cut(s)	410, 875
BspPI	GGATC	2 cut(s)	151, 174
BspTI	CTTAAG	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	66
BsrBI	CCGCTC	1 cut(s)	651
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	4 cut(s)	87, 143, 166, 466
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	221, 551, 576
Bst6I	CTCTTC	1 cut(s)	31
BstAFI	CTTAAG	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	606
BstDEI	CTNAG	1 cut(s)	984
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	236, 463, 795, 816
BstKTI	GATC	4 cut(s)	90, 146, 169, 469
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	87, 143, 166, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 873
BstNSI	RCATGY	2 cut(s)	97, 894
BstSCI	CCNGG	2 cut(s)	393, 978
BstSFI	CTRYAG	2 cut(s)	406, 871
BstSLI	GKGCMC	1 cut(s)	395
BstV1I	GCAGC	6 cut(s)	56, 513, 824, 857, 879, 885
BstX2I	RGATCY	2 cut(s)	87, 143
BstYI	RGATCY	2 cut(s)	87, 143
Bsu15I	ATCGAT	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	236, 463, 795, 816
BtsIMutI	CAGTG	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	870
ClaI	ATCGAT	1 cut(s)	469
Csp6I	GTAC	7 cut(s)	119, 201, 411, 433, 593, 607, 799
CviAII	CATG	8 cut(s)	17, 94, 179, 336, 610, 834, 891, 950
CviJI	RGCY	8 cut(s)	107, 364, 482, 526, 563, 628, 870, 983
CviKI_1	RGCY	8 cut(s)	107, 364, 482, 526, 563, 628, 870, 983
CviQI	GTAC	7 cut(s)	119, 201, 411, 433, 593, 607, 799
DdeI	CTNAG	1 cut(s)	984
DpnI	GATC	4 cut(s)	89, 145, 168, 468
DpnII	GATC	4 cut(s)	87, 143, 166, 466
DraI	TTTAAA	1 cut(s)	256
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	31
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	734
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	8 cut(s)	20, 97, 182, 339, 613, 837, 894, 953
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	2 cut(s)	315, 537
FatI	CATG	8 cut(s)	16, 93, 178, 335, 609, 833, 890, 949
FauI	CCCGC	1 cut(s)	644
Fnu4HI	GCNGC	7 cut(s)	45, 527, 570, 838, 868, 871, 874
FokI	GGATG	4 cut(s)	223, 470, 802, 823
Fsp4HI	GCNGC	7 cut(s)	45, 527, 570, 838, 868, 871, 874
FspBI	CTAG	2 cut(s)	204, 684
GluI	GCNGC	7 cut(s)	45, 527, 570, 838, 868, 871, 874
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	395, 980
Hin1II	CATG	8 cut(s)	20, 97, 182, 339, 613, 837, 894, 953
HinfI	GANTC	1 cut(s)	444
HpaII	CCGG	2 cut(s)	395, 980
HphI	GGTGA	3 cut(s)	791, 805, 938
Hpy166II	GTNNAC	4 cut(s)	121, 209, 902, 968
Hpy188I	TCNGA	5 cut(s)	171, 490, 535, 733, 756
Hpy188III	TCNNGA	2 cut(s)	451, 639
Hpy8I	GTNNAC	4 cut(s)	121, 209, 902, 968
HpyAV	CCTTC	4 cut(s)	448, 565, 645, 779
HpyCH4III	ACNGT	3 cut(s)	221, 551, 576
HpyCH4IV	ACGT	2 cut(s)	380, 885
HpyCH4V	TGCA	7 cut(s)	93, 315, 408, 690, 806, 840, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 873
HpyF3I	CTNAG	1 cut(s)	984
HpySE526I	ACGT	2 cut(s)	380, 885
Hsp92II	CATG	8 cut(s)	20, 97, 182, 339, 613, 837, 894, 953
Kzo9I	GATC	4 cut(s)	87, 143, 166, 466
LmnI	GCTCC	2 cut(s)	369, 648
LpnPI	CCDG	9 cut(s)	208, 253, 275, 399, 408, 624, 792, 880, 921
Lsp1109I	GCAGC	6 cut(s)	56, 513, 824, 857, 879, 885
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	204, 684
MaeII	ACGT	2 cut(s)	380, 885
MaeIII	GTNAC	4 cut(s)	460, 514, 886, 914
MalI	GATC	4 cut(s)	89, 145, 168, 468
MbiI	CCGCTC	1 cut(s)	651
MboI	GATC	4 cut(s)	87, 143, 166, 466
MboII	GAAGA	6 cut(s)	48, 73, 138, 453, 794, 967
MfeI	CAATTG	1 cut(s)	739
MflI	RGATCY	2 cut(s)	87, 143
MhlI	GDGCHC	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	4 cut(s)	347, 698, 734, 739
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	6 cut(s)	157, 294, 437, 458, 767, 853
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	5 cut(s)	84, 255, 657, 762, 879
MslI	CAYNNNNRTG	3 cut(s)	183, 895, 948
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	870
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	2 cut(s)	395, 980
MspR9I	CCNGG	2 cut(s)	395, 980
MunI	CAATTG	1 cut(s)	739
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	569, 873
NciI	CCSGG	2 cut(s)	395, 980
NdeII	GATC	4 cut(s)	87, 143, 166, 466
NlaIII	CATG	8 cut(s)	20, 97, 182, 339, 613, 837, 894, 953
NlaIV	GGNNCC	1 cut(s)	720
NmuCI	GTSAC	2 cut(s)	514, 886
NspI	RCATGY	2 cut(s)	97, 894
PaeR7I	CTCGAG	1 cut(s)	428
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	7 cut(s)	46, 528, 571, 839, 869, 872, 875
PspN4I	GGNNCC	1 cut(s)	720
PspXI	VCTCGAGB	1 cut(s)	428
PstI	CTGCAG	2 cut(s)	410, 875
PstNI	CAGNNNCTG	1 cut(s)	870
PsuI	RGATCY	2 cut(s)	87, 143
PvuII	CAGCTG	1 cut(s)	870
RsaI	GTAC	7 cut(s)	120, 202, 412, 434, 594, 608, 800
RsaNI	GTAC	7 cut(s)	119, 201, 411, 433, 593, 607, 799
RseI	CAYNNNNRTG	3 cut(s)	183, 895, 948
SaqAI	TTAA	5 cut(s)	84, 255, 657, 762, 879
SatI	GCNGC	7 cut(s)	45, 527, 570, 838, 868, 871, 874
Sau3AI	GATC	4 cut(s)	87, 143, 166, 466
ScaI	AGTACT	3 cut(s)	202, 412, 434
ScrFI	CCNGG	2 cut(s)	395, 980
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	406, 871
Sfr274I	CTCGAG	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	428
SmiI	ATTTAAAT	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	183, 895, 948
SmlI	CTYRAG	2 cut(s)	428, 761
SmoI	CTYRAG	2 cut(s)	428, 761
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	4 cut(s)	347, 698, 734, 739
SsiI	CCGC	4 cut(s)	569, 651, 777, 826
SspMI	CTAG	2 cut(s)	204, 684
StyD4I	CCNGG	2 cut(s)	393, 978
StyI	CCWWGG	1 cut(s)	137
SwaI	ATTTAAAT	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	221, 551, 576
TaiI	ACGT	2 cut(s)	383, 888
TaqI	TCGA	2 cut(s)	429, 469
TasI	AATT	4 cut(s)	347, 698, 734, 739
TatI	WGTACW	5 cut(s)	118, 200, 410, 432, 606
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	5 cut(s)	84, 255, 657, 762, 879
Tru9I	TTAA	5 cut(s)	84, 255, 657, 762, 879
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	514, 886
TseI	GCWGC	6 cut(s)	44, 526, 837, 867, 870, 873
Tsp45I	GTSAC	2 cut(s)	514, 886
TspDTI	ATGAA	2 cut(s)	74, 827
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	761
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	3 cut(s)	347, 698, 734
XceI	RCATGY	2 cut(s)	97, 894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	428
XspI	CTAG	2 cut(s)	204, 684
ZrmI	AGTACT	3 cut(s)	202, 412, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.