Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0018633

Physical Location & Seq

Genomic Coordinates Forward (+)

3998993 .. 3999812

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0032500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCCCAAAAAACTCCACCCCCGAAGGTTAGTTTGAAGCTCCTAATCGACAAAGAGTATCAGAAGGTTGTGTTTGCTGAAGCTGGCAAAGAGTTCGTGGATTTCCTCTTCACTCTTCTGTCTTTGCCTCTTTTCAACGCGGCCAGAGTTTGTAAGGTTGGAAGTTTAAGCAATATCTATGGGAGCATTGACGCCCTCGGTGACAAGTACATGCTCCCCAATGTCAACAAGAACACTATGCTGAGATCTAAGGAACATGTTGCCGTATTTAACAAACTTCAGCTTGTGTTGAGCAACGAACCGGAACTTAAACCACTTATGCCGTCGAATGTGAAGAAGTTTTATCAACACGGCTCATGGGTGACAGATGACTCTAAAGCCATTTGTCCAATGTGCAGTAAAACTATGTCGACCGGTGTCGGCTATGTTGCCCCTCCGGGAGAACCTAGTTTGATGACCAGGGACGAAGAGTATGTAGAGAAATGGTTGAAGACATTAATGGAGTCAAACTCAGTTCTTACCGACCTCTTCCTTGGGAAGAAACCAATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

184

Amino Acids

20.57

Weight (kDa)

8.86

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	8 - 137	1.6e-15	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018633)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267431
rosa_laevigata	RLG00000014006 RLG00000014010
rosa_multiflora	Rmu_sc0001068.1_g000007 Rmu_sc0006674.1_g000021
rosa_roxburghii	Rroxscaffold_7G00200800 Rroxscaffold_7G00201370
rosa_rugosa	Rorug06G0032400 Rorug06G0032500
rosa_wichuraiana	Rw0G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	410
AccII	CGCG	1 cut(s)	140
AciI	CCGC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	141
AcuI	CTGAAG	2 cut(s)	99, 263
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	256
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	37, 136, 490
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	3 cut(s)	40, 83, 283
AluI	AGCT	3 cut(s)	40, 83, 283
AoxI	GGCC	1 cut(s)	141
AseI	ATTAAT	1 cut(s)	497
AsiGI	ACCGGT	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	212, 373
BbsI	GAAGAC	1 cut(s)	497
BceAI	ACGGC	3 cut(s)	248, 307, 367
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	438
BfaI	CTAG	1 cut(s)	447
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	438, 460
BmrFI	CCNGG	2 cut(s)	438, 460
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	497
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpuMI	CCSGG	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	196, 459, 532
BsaWI	WCCGGW	2 cut(s)	301, 413
Bse118I	RCCGGY	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	3 cut(s)	196, 459, 532
BseMII	CTCAG	2 cut(s)	233, 525
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	413
BsiEI	CGRYCG	1 cut(s)	414
BsiSI	CCGG	3 cut(s)	302, 414, 437
BslFI	GGGAC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	234, 524
BspFNI	CGCG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	196, 459, 532
BssMI	GATC	1 cut(s)	245
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	460
Bst6I	CTCTTC	4 cut(s)	113, 120, 462, 533
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	242, 249, 511
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstMCI	CGRYCG	1 cut(s)	414
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	2 cut(s)	214, 260
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	436, 458
BstUI	CGCG	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	413
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	3 cut(s)	211, 257, 357
CviJI	RGCY	7 cut(s)	40, 83, 143, 283, 354, 380, 423
CviKI_1	RGCY	7 cut(s)	40, 83, 143, 283, 354, 380, 423
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	242, 249, 511
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	4 cut(s)	113, 120, 462, 533
EarI	CTCTTC	4 cut(s)	113, 120, 462, 533
Eco130I	CCWWGG	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	99, 263
EcoRII	CCWGG	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	3 cut(s)	214, 260, 360
FaiI	YATR	9 cut(s)	180, 212, 239, 258, 320, 358, 407, 426, 474
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	3 cut(s)	210, 256, 356
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	3 cut(s)	302, 414, 437
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	214, 260, 360
HincII	GTYRAC	2 cut(s)	226, 411
HindII	GTYRAC	2 cut(s)	226, 411
HinfI	GANTC	2 cut(s)	371, 503
HpaII	CCGG	3 cut(s)	302, 414, 437
HphI	GGTGA	2 cut(s)	212, 373
Hpy166II	GTNNAC	2 cut(s)	226, 411
Hpy188I	TCNGA	1 cut(s)	63
Hpy8I	GTNNAC	2 cut(s)	226, 411
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	19, 58
HpyCH4V	TGCA	1 cut(s)	396
HpyF3I	CTNAG	3 cut(s)	242, 249, 511
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	214, 260, 360
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	3 cut(s)	45, 183, 219
LpnPI	CCDG	7 cut(s)	69, 157, 315, 427, 445, 450, 472
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	200, 361
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	7 cut(s)	100, 107, 346, 479, 502, 520, 550
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	1 cut(s)	546
MlyI	GAGTC	2 cut(s)	365, 512
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	5 cut(s)	116, 138, 206, 444, 536
MseI	TTAA	4 cut(s)	167, 270, 309, 497
MspI	CCGG	3 cut(s)	302, 414, 437
MspR9I	CCNGG	2 cut(s)	438, 460
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	1 cut(s)	140
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	214, 260, 360
NmuCI	GTSAC	2 cut(s)	200, 361
NspI	RCATGY	2 cut(s)	214, 260
PciI	ACATGT	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	436
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	365, 511
PpsI	GAGTC	2 cut(s)	365, 511
PscI	ACATGT	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	409
SaqAI	TTAA	4 cut(s)	167, 270, 309, 497
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	365, 512
ScrFI	CCNGG	2 cut(s)	438, 460
SetI	ASST	8 cut(s)	30, 42, 69, 85, 159, 285, 448, 528
Sse9I	AATT	1 cut(s)	546
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	436, 458
StyI	CCWWGG	1 cut(s)	532
TaqI	TCGA	3 cut(s)	48, 326, 410
TasI	AATT	1 cut(s)	546
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	4 cut(s)	167, 270, 309, 497
Tru9I	TTAA	4 cut(s)	167, 270, 309, 497
TseFI	GTSAC	2 cut(s)	200, 361
Tsp45I	GTSAC	2 cut(s)	200, 361
VspI	ATTAAT	1 cut(s)	497
XceI	RCATGY	2 cut(s)	214, 260
XmiI	GTMKAC	1 cut(s)	410
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.