Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018203

Physical Location & Seq

Genomic Coordinates Reverse (-)

37034254 .. 37035458

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCTACCGGAATCGTGACCCAGTTCAAGGAAGCCGGCCAATCGACGATGGCGGCGCACCAGCTGTGGTCCAAATTCACCGACTCGACCGCCCCCAGCCTCCCTTCAAGCCTCTTCGACGCCTCGACCCGAGTCTTCCAGAACTTGACCCGGTTCTTCTTCTTCACATGCCTAAACCAACAATTTATCGACGAGGTGGGAGCCGACGAAGCCGGCGCCACCGGTGACGACACTCCTGAGCCCGCGCCTTGCCGAGGCAGGCAGGAACCTTGCCGGTGGAGAAGGAGCCTCCAAGGTTACGTCGGTTTTCTGGAAGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

107

Amino Acids

11.88

Weight (kDa)

4.88

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018203)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275271
rosa_laevigata	RLG00000024622
rosa_multiflora	Rmu_sc0003465.1_g000049
rosa_roxburghii	Rroxscaffold_4G00319090
rosa_rugosa	Rorug02G0141600
rosa_samantha	Rh1DG035000 Rh4BG150800 Rh4BG192300 Rh4CG279100 Rh5AG431300 Rh5DG460100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	245
AciI	CCGC	3 cut(s)	53, 90, 243
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	2 cut(s)	120, 216
AfiI	CCNNNNNNNGG	2 cut(s)	28, 254
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	28, 108
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	221
AspLEI	GCGC	3 cut(s)	58, 218, 247
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	70, 236
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	4 cut(s)	202, 217, 267, 287
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
BoxI	GACNNNNGTC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	151
BsaHI	GRCGYC	2 cut(s)	120, 216
BsaJI	CCNNGG	2 cut(s)	253, 292
BsaWI	WCCGGW	2 cut(s)	8, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 254
Bse118I	RCCGGY	4 cut(s)	35, 212, 221, 273
Bse1I	ACTGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	253, 292
BseLI	CCNNNNNNNGG	2 cut(s)	28, 254
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	6 cut(s)	9, 36, 151, 213, 222, 274
BslI	CCNNNNNNNGG	2 cut(s)	28, 254
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	243
BspACI	CCGC	3 cut(s)	53, 90, 243
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	4 cut(s)	202, 217, 267, 287
BspT107I	GGYRCC	1 cut(s)	215
BsrFI	RCCGGY	4 cut(s)	35, 212, 221, 273
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	4 cut(s)	35, 212, 221, 273
BssECI	CCNNGG	2 cut(s)	253, 292
BssNI	GRCGYC	2 cut(s)	120, 216
BssT1I	CCWWGG	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	120, 216
BstC8I	GCNNGC	4 cut(s)	37, 214, 243, 260
BstDEI	CTNAG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	3 cut(s)	58, 218, 247
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	171
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	37, 214, 243, 260
CfoI	GCGC	3 cut(s)	58, 218, 247
Cfr10I	RCCGGY	4 cut(s)	35, 212, 221, 273
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	128
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	9 cut(s)	35, 39, 64, 99, 111, 203, 212, 241, 288
CviKI_1	RGCY	9 cut(s)	35, 39, 64, 99, 111, 203, 212, 241, 288
DdeI	CTNAG	1 cut(s)	237
DinI	GGCGCC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	171
FaiI	YATR	1 cut(s)	169
FatI	CATG	1 cut(s)	167
FauI	CCCGC	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	3 cut(s)	57, 217, 246
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	6 cut(s)	9, 36, 151, 213, 222, 274
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	3 cut(s)	58, 218, 247
Hin1I	GRCGYC	2 cut(s)	120, 216
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	3 cut(s)	56, 216, 245
HinP1I	GCGC	3 cut(s)	56, 216, 245
HinfI	GANTC	3 cut(s)	12, 83, 132
HpaII	CCGG	6 cut(s)	9, 36, 151, 213, 222, 274
HphI	GGTGA	2 cut(s)	70, 236
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	4 cut(s)	16, 139, 236, 311
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	5 cut(s)	49, 122, 194, 209, 305
HpyAV	CCTTC	3 cut(s)	114, 276, 308
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	2 cut(s)	120, 216
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	3 cut(s)	56, 216, 245
KasI	GGCGCC	1 cut(s)	215
KroI	GCCGGC	2 cut(s)	35, 212
KroNI	GCCGGC	2 cut(s)	37, 214
LmnI	GCTCC	2 cut(s)	200, 285
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	16, 224, 296
MboII	GAAGA	5 cut(s)	106, 127, 148, 151, 154
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	74, 182
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	77, 141
MnlI	CCTC	6 cut(s)	110, 122, 133, 187, 248, 299
MroNI	GCCGGC	2 cut(s)	35, 212
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	6 cut(s)	9, 36, 151, 213, 222, 274
MspR9I	CCNGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	209
NaeI	GCCGGC	2 cut(s)	37, 214
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	151
NgoMIV	GCCGGC	2 cut(s)	35, 212
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	4 cut(s)	202, 217, 267, 287
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	16, 224
NspI	RCATGY	1 cut(s)	171
PdiI	GCCGGC	2 cut(s)	37, 214
PfeI	GAWTC	1 cut(s)	12
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	77, 140
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	2 cut(s)	77, 140
PshAI	GACNNNNGTC	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	4 cut(s)	202, 217, 267, 287
PspPI	GGNCC	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	64
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	2 cut(s)	77, 141
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	5 cut(s)	66, 198, 271, 298, 303
SfoI	GGCGCC	1 cut(s)	217
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	69
Sse9I	AATT	2 cut(s)	74, 182
SsiI	CCGC	3 cut(s)	53, 90, 243
SspDI	GGCGCC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	292
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	5 cut(s)	44, 86, 117, 125, 189
TasI	AATT	2 cut(s)	74, 182
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	16, 224
Tsp45I	GTSAC	2 cut(s)	16, 224
VpaK11BI	GGWCC	1 cut(s)	69
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.