Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018203

Physical Location & Seq

Genomic Coordinates Reverse (-)

37545263 .. 37546053

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024622

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCTACCGAAATCGTGACCTGGTTCAAGGAAGCTGACCAATCGACGATGGCGGCGCACCAGCTGTGGTCCGAATTCATCGACCCGACCACCCTTAGCCTCCCTTCAAGCCTCTTCGACCCCTCGACCCGAGCCAGCGAGAACCTTGCCGGCGTTTTTGTAGAGGTTGATGGAGAAGGAGGCAGTGTTGATTCGGTCATGGACGGAGGAGAAGGATCGGAGGATTGTAAAGTCGGCCGGATTTGGACGGATATTTCCGGCCACATTCACAATGGAGGCTCACGGATCGGGGCTCCGGCATGCCACGGTCTTGGCCTTCTATGTCGCGGGTATCTAGGCTGCTTATATCTGGTAGTCAAGCTCAGTTTATTGAATGGGTTGAATTGGAGAATCAGGTACGTTGTGCCGCCGTTGTGTCACTATTCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

144

Amino Acids

15.5

Weight (kDa)

5.21

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018203)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275271
rosa_laevigata	RLG00000024622
rosa_multiflora	Rmu_sc0003465.1_g000049
rosa_roxburghii	Rroxscaffold_4G00319090
rosa_rugosa	Rorug02G0141600
rosa_samantha	Rh1DG035000 Rh4BG150800 Rh4BG192300 Rh4CG279100 Rh5AG431300 Rh5DG460100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	53, 327, 407
AclWI	GGATC	2 cut(s)	223, 293
AcoI	YGGCCR	2 cut(s)	235, 259
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	28, 108, 373, 382
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	35, 64, 361
AluI	AGCT	3 cut(s)	35, 64, 361
AlwI	GGATC	2 cut(s)	223, 293
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	3 cut(s)	235, 259, 313
ApeKI	GCWGC	1 cut(s)	339
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	2 cut(s)	43, 164
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	22
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	3 cut(s)	54, 340, 407
BlsI	GCNGC	3 cut(s)	55, 341, 408
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse118I	RCCGGY	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	222
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	237, 261, 315
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	150, 238, 258, 296
BsnI	GGCC	3 cut(s)	237, 261, 315
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	215, 285
BspACI	CCGC	3 cut(s)	53, 327, 407
BspANI	GGCC	3 cut(s)	237, 261, 315
BspCNI	CTCAG	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	223, 293
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	215, 285
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	136, 151, 301
BstDEI	CTNAG	2 cut(s)	95, 362
BstDSI	CCRYGG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	218, 288
BstMBI	GATC	2 cut(s)	215, 285
BstMCI	CGRYCG	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstZI	CGGCCG	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	237, 261, 315
BtgI	CCRYGG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	136, 151, 301
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	2 cut(s)	199, 300
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	95, 362
DpnI	GATC	2 cut(s)	217, 287
DpnII	GATC	2 cut(s)	215, 285
EaeI	YGGCCR	2 cut(s)	235, 259
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	2 cut(s)	202, 303
FaiI	YATR	4 cut(s)	200, 301, 322, 346
FatI	CATG	2 cut(s)	198, 299
FauI	CCCGC	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	54, 340, 407
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	54, 340, 407
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	54, 340, 407
HaeIII	GGCC	3 cut(s)	237, 261, 315
HapII	CCGG	4 cut(s)	150, 238, 258, 296
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	202, 303
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	191, 390
HpaII	CCGG	4 cut(s)	150, 238, 258, 296
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	73, 220
Hpy188III	TCNNGA	2 cut(s)	16, 426
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	4 cut(s)	114, 170, 206, 326
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	399
HpyF3I	CTNAG	2 cut(s)	95, 362
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	202, 303
HspAI	GCGC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	215, 285
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	326
MabI	ACCWGGT	1 cut(s)	20
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	16, 416
MalI	GATC	2 cut(s)	217, 287
MboI	GATC	2 cut(s)	215, 285
MboII	GAAGA	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	74, 382
MnlI	CCTC	8 cut(s)	110, 122, 133, 157, 173, 200, 214, 269
MroNI	GCCGGC	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	4 cut(s)	150, 238, 258, 296
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	327
NaeI	GCCGGC	1 cut(s)	151
NdeII	GATC	2 cut(s)	215, 285
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	202, 303
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	16, 416
NspI	RCATGY	1 cut(s)	303
PaeI	GCATGC	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	191, 390
PkrI	GCNGC	3 cut(s)	55, 341, 408
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SatI	GCNGC	3 cut(s)	54, 340, 407
Sau3AI	GATC	2 cut(s)	215, 285
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	8 cut(s)	23, 37, 66, 147, 168, 363, 398, 402
SexAI	ACCWGGT	1 cut(s)	20
SinI	GGWCC	1 cut(s)	69
SphI	GCATGC	1 cut(s)	303
Sse9I	AATT	2 cut(s)	74, 382
SsiI	CCGC	3 cut(s)	53, 327, 407
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	5 cut(s)	44, 81, 117, 125, 427
TaqII	GACCGA	1 cut(s)	184
TasI	AATT	2 cut(s)	74, 382
TauI	GCSGC	2 cut(s)	56, 409
TfiI	GAWTC	2 cut(s)	191, 390
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	16, 416
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	2 cut(s)	16, 416
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	3 cut(s)	219, 263, 298
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.