Rh5DG460100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018203
Physical Location & Seq
Reverse (-)
73105163 .. 73105748
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG460100.1

Sequence Viewer

Length: 285 bp
ATGAAGCCAGAGCCACTGGTGACGACGATCCTGACCCTGCGCCTTGCCCAGGCCGGCGGGAACCTTGCCGGCGTTTTTGCGGAGGTCGGTGGAGAAGGAGGCAGTGTTGATTCGGTCGTGGACGGAGGAGAAGGATCGGAGGAATGGGGCTCCGGCTTGCCACCATCTTGGCCTTCTGCGTCGCGGGTATCTGGGCTGCTTATATCTGGTAGTCAAGCTCAGTTTGTTGAATGGGTTGAATTGGAGAATCAGAATTATGAAGTTTGGTGCCGACCCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.89

Weight (kDa)

4.24

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018203)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0275271
rosa_laevigata RLG00000024622
rosa_multiflora Rmu_sc0003465.1_g000049
rosa_roxburghii Rroxscaffold_4G00319090
rosa_rugosa Rorug02G0141600
rosa_samantha Rh1DG035000 Rh4BG150800 Rh4BG192300 Rh4CG279100 Rh5AG431300 Rh5DG460100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AccII CGCG 1 cut(s) 184
AciI CCGC 3 cut(s) 57, 80, 184
AclWI GGATC 2 cut(s) 22, 142
AfiI CCNNNNNNNGG 2 cut(s) 49, 277
AgsI TTSAA 2 cut(s) 230, 239
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
AlwI GGATC 2 cut(s) 22, 142
AoxI GGCC 2 cut(s) 51, 170
ApeKI GCWGC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 31
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 50
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 3 cut(s) 62, 151, 269
BmrFI CCNGG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 48, 276
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 277
Bse118I RCCGGY 2 cut(s) 53, 68
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 48, 276
BseLI CCNNNNNNNGG 2 cut(s) 49, 277
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 53, 172
BshNI GGYRCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 54, 69, 153
BslI CCNNNNNNNGG 2 cut(s) 49, 277
BsnI GGCC 2 cut(s) 53, 172
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 27, 134
BspACI CCGC 3 cut(s) 57, 80, 184
BspANI GGCC 2 cut(s) 53, 172
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 62, 151, 269
BspPI GGATC 2 cut(s) 22, 142
BspT107I GGYRCC 1 cut(s) 267
BsrFI RCCGGY 2 cut(s) 53, 68
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 2 cut(s) 53, 68
BssECI CCNNGG 2 cut(s) 48, 276
BssMI GATC 2 cut(s) 27, 134
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 55, 70, 158
BstDEI CTNAG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 30, 137
BstMBI GATC 2 cut(s) 27, 134
BstMCI CGRYCG 1 cut(s) 117
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 53, 172
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 14, 109
Cac8I GCNNGC 3 cut(s) 55, 70, 158
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 2 cut(s) 53, 68
CseI GACGC 1 cut(s) 168
CviJI RGCY 8 cut(s) 7, 13, 53, 150, 156, 172, 196, 218
CviKI_1 RGCY 8 cut(s) 7, 13, 53, 150, 156, 172, 196, 218
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 29, 136
DpnII GATC 2 cut(s) 27, 134
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 276
FaiI YATR 2 cut(s) 203, 258
FauI CCCGC 2 cut(s) 50, 177
Fnu4HI GCNGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 197
GlaI GCGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 53, 172
HapII CCGG 3 cut(s) 54, 69, 153
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 2 cut(s) 110, 247
HpaII CCGG 3 cut(s) 54, 69, 153
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 139, 252
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 28, 184
HpyAV CCTTC 3 cut(s) 89, 125, 183
HpyF3I CTNAG 1 cut(s) 219
HspAI GCGC 1 cut(s) 40
KroI GCCGGC 2 cut(s) 53, 68
KroNI GCCGGC 2 cut(s) 55, 70
Kzo9I GATC 2 cut(s) 27, 134
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 29, 136
MboI GATC 2 cut(s) 27, 134
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 239, 253
MnlI CCTC 4 cut(s) 76, 92, 119, 133
MroNI GCCGGC 2 cut(s) 53, 68
MspI CCGG 3 cut(s) 54, 69, 153
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 184
NaeI GCCGGC 2 cut(s) 55, 70
NdeII GATC 2 cut(s) 27, 134
NgoMIV GCCGGC 2 cut(s) 53, 68
NlaIV GGNNCC 3 cut(s) 62, 151, 269
NmuCI GTSAC 1 cut(s) 19
PdiI GCCGGC 2 cut(s) 55, 70
PfeI GAWTC 2 cut(s) 110, 247
PkrI GCNGC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 62, 151, 269
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 2 cut(s) 27, 134
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 152
SetI ASST 3 cut(s) 66, 87, 220
Sse9I AATT 2 cut(s) 239, 253
SsiI CCGC 3 cut(s) 57, 80, 184
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 276
TaqII GACCGA 1 cut(s) 103
TasI AATT 2 cut(s) 239, 253
TfiI GAWTC 2 cut(s) 110, 247
TscAI CASTG 2 cut(s) 21, 109
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 17, 273
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 2 cut(s) 21, 109
XagI CCTNNNNNAGG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.