Rh5AG431300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018203
Physical Location & Seq
Reverse (-)
74128651 .. 74132519
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG431300.1

Sequence Viewer

Length: 486 bp
ATGGTTCGTATAGCTGGAACTGTGGCAGTTAGGCACCAACAAAATATTCATTTCGGTAAATTTCACCTAGCTTCCATCTCTCGCTGCCTCTCTTTCAAATATGCCCCAATTCTCTTAGTAAAGTCGGCCGGATCTGGTCGGATATTTCCGGCCACATTCACAATGGAAGCTCACGGGTCAGAGCTCCGGCTTGCCACCGTCTTGCCCTTCTGCGTCGCAGATTGGGTCTCTTTCATGCCAGCCTTCAGTCTGCAGGTGAAAGGGGTAAATTTTAACCCATTTCGGTCATGTCTTGTTGGAACCCAGTCAAGAGGGGTACCGGTGGAAGCAACTTTTTTACCCATTCTGGAAGCCAGTCAAGAGGGGTGCCGGTGGAAGCAACTTTTTTACCCATTCTGGAAGCCAGTCAAGAGGGGTGCCGGTGGCGGTGAACTTGCTCTTAGGAGTAAAGTCTTGTTGCCGACGGAAAAGACTGGTCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.76

Weight (kDa)

10.11

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018203)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0275271
rosa_laevigata RLG00000024622
rosa_multiflora Rmu_sc0003465.1_g000049
rosa_roxburghii Rroxscaffold_4G00319090
rosa_rugosa Rorug02G0141600
rosa_samantha Rh1DG035000 Rh4BG150800 Rh4BG192300 Rh4CG279100 Rh5AG431300 Rh5DG460100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 244
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 4 cut(s) 33, 316, 366, 416
AciI CCGC 1 cut(s) 426
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 2 cut(s) 126, 150
AcsI RAATTY 2 cut(s) 59, 268
AcuI CTGAAG 1 cut(s) 229
AfaI GTAC 1 cut(s) 318
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 4 cut(s) 14, 71, 170, 184
AluI AGCT 4 cut(s) 14, 71, 170, 184
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 232, 482
AlwI GGATC 1 cut(s) 139
AoxI GGCC 2 cut(s) 126, 150
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 59, 268
AsiGI ACCGGT 1 cut(s) 319
Asp718I GGTACC 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 56, 268, 440
BanI GGYRCC 4 cut(s) 33, 316, 366, 416
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 232, 482
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmiI GGNNCC 5 cut(s) 35, 301, 318, 368, 418
BmrI ACTGGG 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BsaI GGTCTC 2 cut(s) 232, 482
BsaWI WCCGGW 1 cut(s) 319
Bse118I RCCGGY 3 cut(s) 319, 369, 419
Bse1I ACTGG 4 cut(s) 304, 354, 404, 478
BseNI ACTGG 4 cut(s) 304, 354, 404, 478
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 128, 152
BshNI GGYRCC 4 cut(s) 33, 316, 366, 416
BshTI ACCGGT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 6 cut(s) 129, 149, 187, 320, 370, 420
BsmAI GTCTC 2 cut(s) 232, 482
BsnI GGCC 2 cut(s) 128, 152
Bso31I GGTCTC 2 cut(s) 232, 482
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 128, 152
BspLI GGNNCC 5 cut(s) 35, 301, 318, 368, 418
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 4 cut(s) 33, 316, 366, 416
BspTNI GGTCTC 2 cut(s) 232, 482
BsrFI RCCGGY 3 cut(s) 319, 369, 419
BsrI ACTGG 4 cut(s) 304, 354, 404, 478
BssAI RCCGGY 3 cut(s) 319, 369, 419
BssMI GATC 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 22, 199
BstC8I GCNNGC 2 cut(s) 192, 240
BstDEI CTNAG 2 cut(s) 115, 440
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 2 cut(s) 232, 482
BstMBI GATC 1 cut(s) 131
BstMCI CGRYCG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 128, 152
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 192, 240
Cfr10I RCCGGY 3 cut(s) 319, 369, 419
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 317
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 2 cut(s) 235, 288
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 115, 440
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 126, 150
EagI CGGCCG 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 2 cut(s) 232, 482
Eco52I CGGCCG 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 2 cut(s) 238, 291
FaiI YATR 4 cut(s) 11, 102, 236, 289
FatI CATG 2 cut(s) 234, 287
Fnu4HI GCNGC 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 2 cut(s) 128, 152
HapII CCGG 6 cut(s) 129, 149, 187, 320, 370, 420
HgaI GACGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 238, 291
HpaII CCGG 6 cut(s) 129, 149, 187, 320, 370, 420
HphI GGTGA 3 cut(s) 56, 268, 440
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 2 cut(s) 141, 181
Hpy188III TCNNGA 5 cut(s) 309, 347, 359, 397, 409
Hpy8I GTNNAC 1 cut(s) 431
Hpy99I CGWCG 2 cut(s) 218, 466
HpyAV CCTTC 2 cut(s) 217, 253
HpyCH4III ACNGT 2 cut(s) 22, 199
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 115, 440
Hsp92II CATG 2 cut(s) 238, 291
KpnI GGTACC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 59, 108, 268
MmeI TCCRAC 2 cut(s) 119, 277
MnlI CCTC 4 cut(s) 98, 305, 355, 405
MseI TTAA 1 cut(s) 273
MspI CCGG 6 cut(s) 129, 149, 187, 320, 370, 420
NdeII GATC 1 cut(s) 131
NlaIII CATG 2 cut(s) 238, 291
NlaIV GGNNCC 5 cut(s) 35, 301, 318, 368, 418
PaqCI CACCTGC 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 186
PspN4I GGNNCC 5 cut(s) 35, 301, 318, 368, 418
PstI CTGCAG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 186
SetI ASST 6 cut(s) 16, 69, 73, 172, 186, 258
SfcI CTRYAG 1 cut(s) 251
Sse9I AATT 3 cut(s) 59, 108, 268
SsiI CCGC 1 cut(s) 426
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 186
TaaI ACNGT 2 cut(s) 22, 199
TaqII GACCGA 1 cut(s) 273
TasI AATT 3 cut(s) 59, 108, 268
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 38, 223
TspGWI ACGGA 1 cut(s) 479
XapI RAATTY 2 cut(s) 59, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.