Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018203

Physical Location & Seq

Genomic Coordinates Reverse (-)

53619261 .. 53622581

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCTACCGGAATCGTGACCCGGTTCAAGGAAGCCGGCCAATCGACGATGGCGGCGCACCAGCTGTGGTCTGAATTCACTGACTCGACCGCCCCCAGCCTCCCTTCAAGCCTCTTCGACGCCTCGACCCGAGTCTTCCAGAACTTGACCCGGTTCTTCTTCTTCACATGCCTAAACCAACAATTTATCGAGCCGACGAAGCCGGCGCCACTGGTGACGATACTCCTGAGCCCGCGCCTTGCCGAGGCAGGCAGGAACCTTGCCGGTGTTGTTGCGGAGGTCGGTGGAGAAGGAGCCTCCAAGGTCCCTCCCTCTCTCTTTCTATCCAAATGTAATTGCAATTTCGAATGTCAGGACCTGTTTGGTTCATCAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016032 GO:0016192 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

126

Amino Acids

13.66

Weight (kDa)

5.29

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018203)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275271
rosa_laevigata	RLG00000024622
rosa_multiflora	Rmu_sc0003465.1_g000049
rosa_roxburghii	Rroxscaffold_4G00319090
rosa_rugosa	Rorug02G0141600
rosa_samantha	Rh1DG035000 Rh4BG150800 Rh4BG192300 Rh4CG279100 Rh5AG431300 Rh5DG460100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	235
AciI	CCGC	4 cut(s)	53, 90, 233, 275
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	2 cut(s)	120, 206
AfiI	CCNNNNNNNGG	2 cut(s)	28, 244
AgsI	TTSAA	2 cut(s)	28, 108
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	3 cut(s)	58, 208, 237
AspS9I	GGNCC	2 cut(s)	304, 355
AsuC2I	CCSGG	2 cut(s)	22, 151
AsuHPI	GGTGA	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	345
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	2 cut(s)	304, 355
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	1 cut(s)	43
BcnI	CCSGG	2 cut(s)	22, 151
BfoI	RGCGCY	1 cut(s)	209
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	22, 151
Bme18I	GGWCC	2 cut(s)	304, 355
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	304, 355
BmiI	GGNNCC	4 cut(s)	207, 257, 295, 306
BmrFI	CCNGG	2 cut(s)	22, 151
BoxI	GACNNNNGTC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	345
BpuMI	CCSGG	2 cut(s)	22, 151
BsaHI	GRCGYC	2 cut(s)	120, 206
BsaJI	CCNNGG	2 cut(s)	243, 300
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 244
Bse118I	RCCGGY	3 cut(s)	35, 202, 263
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	243, 300
BseLI	CCNNNNNNNGG	2 cut(s)	28, 244
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	6 cut(s)	9, 22, 36, 151, 203, 264
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	28, 244
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	233
BspACI	CCGC	4 cut(s)	53, 90, 233, 275
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	4 cut(s)	207, 257, 295, 306
BspT104I	TTCGAA	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	3 cut(s)	35, 202, 263
BsrI	ACTGG	1 cut(s)	216
BssAI	RCCGGY	3 cut(s)	35, 202, 263
BssECI	CCNNGG	2 cut(s)	243, 300
BssNI	GRCGYC	2 cut(s)	120, 206
BssT1I	CCWWGG	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	120, 206
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	4 cut(s)	37, 204, 233, 250
BstDEI	CTNAG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	3 cut(s)	58, 208, 237
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	171
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	20, 149
BstUI	CGCG	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	78, 209
Cac8I	GCNNGC	4 cut(s)	37, 204, 233, 250
CaiI	CAGNNNCTG	1 cut(s)	358
CfoI	GCGC	3 cut(s)	58, 208, 237
Cfr10I	RCCGGY	3 cut(s)	35, 202, 263
Cfr13I	GGNCC	2 cut(s)	304, 355
CseI	GACGC	1 cut(s)	128
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	9 cut(s)	35, 39, 64, 99, 111, 193, 202, 231, 296
CviKI_1	RGCY	9 cut(s)	35, 39, 64, 99, 111, 193, 202, 231, 296
DdeI	CTNAG	1 cut(s)	227
DinI	GGCGCC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	304, 355
Eco88I	CYCGRG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	304, 355
EcoRI	GAATTC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	233
EgeI	GGCGCC	1 cut(s)	207
EheI	GGCGCC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	171
FaiI	YATR	1 cut(s)	169
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	167
FauI	CCCGC	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	3 cut(s)	57, 207, 236
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	6 cut(s)	9, 22, 36, 151, 203, 264
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	3 cut(s)	58, 208, 237
Hin1I	GRCGYC	2 cut(s)	120, 206
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	3 cut(s)	56, 206, 235
HinP1I	GCGC	3 cut(s)	56, 206, 235
HinfI	GANTC	3 cut(s)	12, 83, 132
HpaII	CCGG	6 cut(s)	9, 22, 36, 151, 203, 264
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	73, 373
Hpy188III	TCNNGA	4 cut(s)	16, 139, 226, 353
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	3 cut(s)	49, 122, 199
HpyAV	CCTTC	2 cut(s)	114, 284
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	227
Hsp92I	GRCGYC	2 cut(s)	120, 206
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	3 cut(s)	56, 206, 235
KasI	GGCGCC	1 cut(s)	205
KroI	GCCGGC	2 cut(s)	35, 202
KroNI	GCCGGC	2 cut(s)	37, 204
LmnI	GCTCC	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	16, 214
MboII	GAAGA	5 cut(s)	106, 127, 148, 151, 154
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	5 cut(s)	74, 182, 334, 340, 376
Mly113I	GGCGCC	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	77, 141
MnlI	CCTC	8 cut(s)	110, 122, 133, 238, 271, 307, 318, 322
MroNI	GCCGGC	2 cut(s)	35, 202
MseI	TTAA	1 cut(s)	379
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	6 cut(s)	9, 22, 36, 151, 203, 264
MspR9I	CCNGG	2 cut(s)	22, 151
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	199
NaeI	GCCGGC	2 cut(s)	37, 204
NarI	GGCGCC	1 cut(s)	206
NciI	CCSGG	2 cut(s)	22, 151
NgoMIV	GCCGGC	2 cut(s)	35, 202
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	4 cut(s)	207, 257, 295, 306
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	16, 214
NspI	RCATGY	1 cut(s)	171
NspV	TTCGAA	1 cut(s)	345
PdiI	GCCGGC	2 cut(s)	37, 204
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	77, 140
PluTI	GGCGCC	1 cut(s)	209
PpsI	GAGTC	2 cut(s)	77, 140
PpuMI	RGGWCCY	2 cut(s)	304, 355
PshAI	GACNNNNGTC	1 cut(s)	131
Psp5II	RGGWCCY	2 cut(s)	304, 355
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	4 cut(s)	207, 257, 295, 306
PspPI	GGNCC	2 cut(s)	304, 355
PspPPI	RGGWCCY	2 cut(s)	304, 355
PstNI	CAGNNNCTG	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	304, 355
SchI	GAGTC	2 cut(s)	77, 141
ScrFI	CCNGG	2 cut(s)	22, 151
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	5 cut(s)	66, 261, 282, 306, 360
SfoI	GGCGCC	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	2 cut(s)	304, 355
Sse9I	AATT	5 cut(s)	74, 182, 334, 340, 376
SsiI	CCGC	4 cut(s)	53, 90, 233, 275
SspDI	GGCGCC	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	20, 149
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	6 cut(s)	44, 86, 117, 125, 189, 345
TasI	AATT	5 cut(s)	74, 182, 334, 340, 376
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TscAI	CASTG	2 cut(s)	85, 216
TseFI	GTSAC	2 cut(s)	16, 214
Tsp45I	GTSAC	2 cut(s)	16, 214
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	85, 216
VpaK11BI	GGWCC	2 cut(s)	304, 355
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.