Rh4BG192300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
33228855 .. 33229178
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG192300.1

Sequence Viewer

Length: 324 bp
ATGGTTCGTATAGCTGGAACTGTGGCAGTTAGGCACAAACAAAATATTCATTTCGGTAAATTTTCACCTACCTTCCATCTCCCGCTGCCTCTCACTCAAATCTGCCCCAATTCTCTTAGTAAAGTCGGCCGGATCCGGACGGATATTTCCGGCCACATTCACAATGGAGGCTCACGGGTCGGGGCTCCGACGTGCCACCCTCTTGGCCTTCTGCGTCGCGGGTATCTGGGCTGCTTATATCTGGTAGTCAAGCTCAGTTTATTGAATGGGTTGAATTGGAGAATCAGGTACGTTGTGCCGCCGCTGTGTCACTATTCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

10.96

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018203)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 219
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 4 cut(s) 83, 219, 299, 302
AclWI GGATC 2 cut(s) 127, 140
AcoI YGGCCR 2 cut(s) 127, 151
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 2 cut(s) 265, 274
AjiI CACGTC 1 cut(s) 192
AluBI AGCT 2 cut(s) 14, 253
AluI AGCT 2 cut(s) 14, 253
AlwI GGATC 2 cut(s) 127, 140
Aor13HI TCCGGA 1 cut(s) 135
AoxI GGCC 3 cut(s) 127, 151, 205
ApeKI GCWGC 2 cut(s) 85, 231
ApoI RAATTY 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 57
BamHI GGATCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 72, 218
BccI CCATC 1 cut(s) 84
BisI GCNGC 4 cut(s) 86, 232, 299, 302
BlsI GCNGC 4 cut(s) 87, 233, 300, 303
BmgBI CACGTC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 134, 186
BsaWI WCCGGW 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 135
BseMII CTCAG 1 cut(s) 268
BseX3I CGGCCG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 72, 218
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 129, 153, 207
BsiEI CGRYCG 1 cut(s) 130
BsiSI CCGG 3 cut(s) 130, 136, 150
BsnI GGCC 3 cut(s) 129, 153, 207
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 4 cut(s) 83, 219, 299, 302
BspANI GGCC 3 cut(s) 129, 153, 207
BspCNI CTCAG 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 135
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 134, 186
BspPI GGATC 2 cut(s) 127, 140
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 116, 254
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMCI CGRYCG 1 cut(s) 130
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 72, 218
BstX2I RGATCY 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 132
BstZI CGGCCG 1 cut(s) 127
BsuRI GGCC 3 cut(s) 129, 153, 207
BtrI CACGTC 1 cut(s) 192
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 8 cut(s) 14, 129, 153, 171, 185, 207, 231, 253
CviKI_1 RGCY 8 cut(s) 14, 129, 153, 171, 185, 207, 231, 253
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 116, 254
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EaeI YGGCCR 2 cut(s) 127, 151
EagI CGGCCG 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 187
FaiI YATR 2 cut(s) 11, 238
FauI CCCGC 2 cut(s) 90, 212
Fnu4HI GCNGC 4 cut(s) 86, 232, 299, 302
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 4 cut(s) 86, 232, 299, 302
GluI GCNGC 4 cut(s) 86, 232, 299, 302
HaeIII GGCC 3 cut(s) 129, 153, 207
HapII CCGG 3 cut(s) 130, 136, 150
HgaI GACGC 1 cut(s) 203
HinfI GANTC 1 cut(s) 282
HpaII CCGG 3 cut(s) 130, 136, 150
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 193, 219
HpyAV CCTTC 2 cut(s) 82, 218
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 191, 291
HpyF3I CTNAG 2 cut(s) 116, 254
HpySE526I ACGT 2 cut(s) 191, 291
Kpn2I TCCGGA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 143, 149, 163, 212, 227, 271
Lsp1109I GCAGC 2 cut(s) 72, 218
MaeII ACGT 2 cut(s) 191, 291
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 3 cut(s) 59, 109, 274
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 3 cut(s) 99, 161, 210
MroI TCCGGA 1 cut(s) 135
MspA1I CMGCKG 2 cut(s) 85, 304
MspI CCGG 3 cut(s) 130, 136, 150
MvnI CGCG 1 cut(s) 219
NdeII GATC 1 cut(s) 132
NlaIV GGNNCC 2 cut(s) 134, 186
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 4 cut(s) 87, 233, 300, 303
PspN4I GGNNCC 2 cut(s) 134, 186
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SatI GCNGC 4 cut(s) 86, 232, 299, 302
Sau3AI GATC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 187
SetI ASST 7 cut(s) 16, 70, 74, 194, 255, 290, 294
Sse9I AATT 3 cut(s) 59, 109, 274
SsiI CCGC 4 cut(s) 83, 219, 299, 302
SspI AATATT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 194, 294
TasI AATT 3 cut(s) 59, 109, 274
TauI GCSGC 2 cut(s) 301, 304
TfiI GAWTC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 2 cut(s) 85, 231
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 155
XapI RAATTY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.