Rmu_sc0003465.1_g000049

GTP-binding protein TypA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003465.1
OG0018203
Physical Location & Seq
Reverse (-)
237810 .. 238754
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003465.1_g000049.1.cds

Sequence Viewer

Length: 645 bp
atggcggggccgttgcttcgctctctctggtcctctacgcgtaacactatctcctcttcctcctccaaaccctacctacgtccctccgcactcgcccgcaccttctcggcggccactgcggccaccgatgctactctacagaggagcagcctgctcgacccggcccgcctccgcaacgtggcagtgatagcgcacgttgaccacggcaagaccaccctcatggaccgcctcctccgccagtgcggcgccgacatcccccacgaacgcgccatggattccatcagcctcgagcgcgagcgcggcatcactatcgcctccaaggttacgtcggttttctggaaggagaatgagctaaacatggttgatacgcctggacatgcagactttggtggtgaagttgagcgggttgtcggtatggttgagggagcagttttagttgttgatgccggggaaggtccgcttgcacagaccaagtttgtgcttgccaaagccttaaaatacgggctgcgtcctattcttcttctaaacaaagtagatcggcctgcaggtacttattctcgttttcaatttgcaaaatgtgcaagaatacatataacacatattctcgtagagaacatcctgaataataacatgtgtctcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

214

Amino Acids

23.43

Weight (kDa)

9.47

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018203)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0275271
rosa_laevigata RLG00000024622
rosa_multiflora Rmu_sc0003465.1_g000049
rosa_roxburghii Rroxscaffold_4G00319090
rosa_rugosa Rorug02G0141600
rosa_samantha Rh1DG035000 Rh4BG150800 Rh4BG192300 Rh4CG279100 Rh5AG431300 Rh5DG460100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 245
AccBSI CCGCTC 1 cut(s) 403
AccII CGCG 4 cut(s) 40, 267, 294, 300
AcoI YGGCCR 2 cut(s) 111, 120
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 2 cut(s) 38, 630
AgsI TTSAA 1 cut(s) 566
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 5 cut(s) 8, 111, 120, 162, 539
ApeKI GCWGC 2 cut(s) 147, 505
AspLEI GCGC 5 cut(s) 193, 248, 269, 294, 300
AspS9I GGNCC 5 cut(s) 8, 30, 163, 223, 455
AsuC2I CCSGG 2 cut(s) 161, 448
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 3 cut(s) 30, 223, 455
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 159, 492
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 4 cut(s) 136, 170, 292, 326
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 2 cut(s) 161, 448
BcoDI GTCTC 1 cut(s) 641
BfmI CTRYAG 2 cut(s) 137, 543
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 536
BglI GCCNNNNNGGC 2 cut(s) 119, 243
BisI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
BlsI GCNGC 6 cut(s) 112, 121, 149, 245, 302, 507
Bme1390I CCNGG 3 cut(s) 161, 372, 448
Bme18I GGWCC 3 cut(s) 30, 223, 455
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 5 cut(s) 8, 30, 163, 223, 455
BmiI GGNNCC 2 cut(s) 9, 247
BmrFI CCNGG 3 cut(s) 161, 372, 448
BmsI GCATC 3 cut(s) 118, 312, 433
BpuMI CCSGG 2 cut(s) 161, 448
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 4 cut(s) 202, 270, 318, 447
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 4 cut(s) 202, 270, 318, 447
BseGI GGATG 2 cut(s) 252, 615
BseLI CCNNNNNNNGG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 4 cut(s) 43, 52, 157, 221
BseXI GCAGC 2 cut(s) 159, 492
Bsh1236I CGCG 4 cut(s) 40, 267, 294, 300
BshFI GGCC 5 cut(s) 10, 113, 122, 164, 541
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 2 cut(s) 161, 447
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 5 cut(s) 10, 113, 122, 164, 541
BsoBI CYCGRG 1 cut(s) 287
Bsp143I GATC 1 cut(s) 535
Bsp19I CCATGG 1 cut(s) 270
BspANI GGCC 5 cut(s) 10, 113, 122, 164, 541
BspFNI CGCG 4 cut(s) 40, 267, 294, 300
BspLI GGNNCC 2 cut(s) 9, 247
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 403
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 4 cut(s) 202, 270, 318, 447
BssMI GATC 1 cut(s) 535
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 270, 318
Bst2UI CCWGG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 7 cut(s) 97, 152, 166, 296, 462, 483, 543
BstDSI CCRYGG 2 cut(s) 202, 270
BstF5I GGATG 2 cut(s) 252, 615
BstFNI CGCG 4 cut(s) 40, 267, 294, 300
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 5 cut(s) 193, 248, 269, 294, 300
BstKTI GATC 1 cut(s) 538
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 9 cut(s) 116, 119, 128, 188, 234, 243, 291, 300, 578
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 2 cut(s) 380, 634
BstSCI CCNGG 3 cut(s) 159, 370, 446
BstSFI CTRYAG 2 cut(s) 137, 543
BstUI CGCG 4 cut(s) 40, 267, 294, 300
BstV1I GCAGC 2 cut(s) 159, 492
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuRI GGCC 5 cut(s) 10, 113, 122, 164, 541
BtgI CCRYGG 2 cut(s) 202, 270
BtsCI GGATG 2 cut(s) 252, 615
BtsI GCAGTG 2 cut(s) 114, 189
BtsIMutI CAGTG 3 cut(s) 114, 189, 245
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 7 cut(s) 97, 152, 166, 296, 462, 483, 543
CfoI GCGC 5 cut(s) 193, 248, 269, 294, 300
Cfr13I GGNCC 5 cut(s) 8, 30, 163, 223, 455
CseI GACGC 1 cut(s) 497
Csp6I GTAC 1 cut(s) 549
CviAII CATG 5 cut(s) 220, 271, 358, 377, 631
CviQI GTAC 1 cut(s) 549
DinI GGCGCC 1 cut(s) 247
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
EaeI YGGCCR 2 cut(s) 111, 120
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 270, 318
Eco47I GGWCC 3 cut(s) 30, 223, 455
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 270, 318
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 270, 318
FaeI CATG 5 cut(s) 223, 274, 361, 380, 634
FaiI YATR 9 cut(s) 221, 272, 359, 378, 416, 591, 593, 600, 632
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 66
FatI CATG 5 cut(s) 219, 270, 357, 376, 630
FauI CCCGC 3 cut(s) 104, 173, 396
Fnu4HI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
FokI GGATG 2 cut(s) 239, 602
Fsp4HI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
GlaI GCGC 5 cut(s) 192, 247, 268, 293, 299
GluI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 5 cut(s) 10, 113, 122, 164, 541
HapII CCGG 2 cut(s) 161, 447
HgaI GACGC 1 cut(s) 497
HhaI GCGC 5 cut(s) 193, 248, 269, 294, 300
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 5 cut(s) 223, 274, 361, 380, 634
Hin6I GCGC 5 cut(s) 191, 246, 267, 292, 298
HinP1I GCGC 5 cut(s) 191, 246, 267, 292, 298
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 161, 447
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 337, 619
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 3 cut(s) 112, 334, 446
HpyCH4IV ACGT 4 cut(s) 79, 177, 195, 326
HpyCH4V TGCA 5 cut(s) 380, 464, 545, 572, 581
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 119, 128, 188, 234, 243, 291, 300, 578
HpySE526I ACGT 4 cut(s) 79, 177, 195, 326
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 5 cut(s) 223, 274, 361, 380, 634
HspAI GCGC 5 cut(s) 191, 246, 267, 292, 298
KasI GGCGCC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 535
LmnI GCTCC 2 cut(s) 144, 425
Lsp1109I GCAGC 2 cut(s) 159, 492
LweI GCATC 3 cut(s) 118, 312, 433
MaeII ACGT 4 cut(s) 79, 177, 195, 326
MaeIII GTNAC 2 cut(s) 41, 322
MalI GATC 1 cut(s) 537
MbiI CCGCTC 1 cut(s) 403
MboI GATC 1 cut(s) 535
MboII GAAGA 4 cut(s) 48, 509, 512, 631
MluCI AATT 1 cut(s) 566
MluI ACGCGT 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 246
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 161, 447
MspR9I CCNGG 3 cut(s) 161, 372, 448
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 4 cut(s) 40, 267, 294, 300
MwoI GCNNNNNNNGC 9 cut(s) 116, 119, 128, 188, 234, 243, 291, 300, 578
NarI GGCGCC 1 cut(s) 246
NciI CCSGG 2 cut(s) 161, 448
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 535
NlaIII CATG 5 cut(s) 223, 274, 361, 380, 634
NlaIV GGNNCC 2 cut(s) 9, 247
NmeAIII GCCGAG 1 cut(s) 86
NspI RCATGY 2 cut(s) 380, 634
PaeR7I CTCGAG 1 cut(s) 287
PciI ACATGT 1 cut(s) 630
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 6 cut(s) 112, 121, 149, 245, 302, 507
PluTI GGCGCC 1 cut(s) 249
PscI ACATGT 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 9, 247
PspPI GGNCC 5 cut(s) 8, 30, 163, 223, 455
PspXI VCTCGAGB 1 cut(s) 287
PstI CTGCAG 1 cut(s) 547
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
Sau3AI GATC 1 cut(s) 535
Sau96I GGNCC 5 cut(s) 8, 30, 163, 223, 455
SbfI CCTGCAGG 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 161, 372, 448
SdaI CCTGCAGG 1 cut(s) 547
SfaNI GCATC 3 cut(s) 118, 312, 433
SfcI CTRYAG 2 cut(s) 137, 543
SfiI GGCCNNNNNGGCC 1 cut(s) 119
SfoI GGCGCC 1 cut(s) 247
Sfr274I CTCGAG 1 cut(s) 287
SinI GGWCC 3 cut(s) 30, 223, 455
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse8387I CCTGCAGG 1 cut(s) 547
Sse9I AATT 1 cut(s) 566
SspDI GGCGCC 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 159, 370, 446
StyI CCWWGG 2 cut(s) 270, 318
TaiI ACGT 4 cut(s) 82, 180, 198, 329
TaqI TCGA 2 cut(s) 156, 288
TasI AATT 1 cut(s) 566
TauI GCSGC 4 cut(s) 113, 122, 246, 303
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 3 cut(s) 121, 189, 245
TseI GCWGC 2 cut(s) 147, 505
TspRI CASTG 3 cut(s) 121, 189, 245
VpaK11BI GGWCC 3 cut(s) 30, 223, 455
XceI RCATGY 2 cut(s) 380, 634
XhoI CTCGAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.