Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008051

Physical Location & Seq

Genomic Coordinates Reverse (-)

48669149 .. 48672143

Gene Structure 2995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGGTGTTGTTGCTGTTGTTGGGTGATAGACCAGATGCTTTATGTTGCTTCTCTGTGAGGGTTCGAGATAAGAGTAGTACTAGAAAGCAGCGGGTCCCTACTCTCTCCTCTCCTGCTTCCTTAATCCGATACACCACTCTCTCCCTCTTGCACTTATCCGTACCCACCATCCCCTATCTGATTCCAACAAAAAAACCAAAACCATTTTTTTTGGTGCGTTTTGATACCATGGATGGAGTGCAAGTTCAAGTCCACGGCAACCACCACCAAGATCTGCATGGAGAGGATCACCACAGCCAGCATCTCGTCGGCAAAGAAGTGATGCGGAACGATTTCGGAGAAGAAGGTGACGCCGCTGATCTATGGCTTGATAATGAGCAAGATTCTCTTCTCGCTGACGTCAACGACGGAACTGCTTCCATCTTCTGCAATGACTTCCCTCCTCTGCCTGACTTCCCTTGCATGTCATCCTCTTCTTCTTCGTCTTCGACTCGGGTGCCGGTGAAGACCGTGTCGTCGTCTTCCTCGGCATCTTCGTCTTCTTCCGCGGCTTCCTGGGCGGTTCTCAAATCAGATGCGGAGGATAATAACAATTACCATTCTCAAGATTATCAGCAGCAACAAGACAACAACAACAATTACTACTCTCGTAACGATTCGGCTGATGCACATCCGGCGGGGGCGTTGTCCTCCACCGCCTCGATGGAGATCTCTCAGCCGTCGGATCTCGGAATGGAGTGCATGGACATGATGGAGACTTTCGGGTACATAGATCTGTTCGAAGGCAACGAGTTGTTCGACCCGTCTTCCATTTTCCAAAACGAGAATCCAATGATGGACCAGTTCCAAGCGCAGGAGCAACCTCCTCAGGAACAGATGCATGCAGACAATCAAACCTCACACCCACAAGAGAACATGACCATGGGAGATCAGAGCAACAAGGTTCCGGAGGACGACATGGCGTCTGTGTTCTTGGAGTGGCTGAGGTCAAACCGAGAGACGGTTTCAGCCGAGGATTTGAGGAGCGTGAAGATCAAGAAGTCAACAATCGAGTCCGCCGCGAGGCGTTTGGGTGGAGGCAAAGAGGCGATGAAGCAGTTACTCAAACTGGTGCTTGAGTGGGTTCAAACTAACCATCTCCAAAAGAGGCGCGGTACTAAAGACTCGGGGATACAACAGTATGCAGTAGACCCATTTCAAAACGCCATCCCTAACCCTAACCCTAGTCTTAACCCTACACAAAATCCTCCCATATCATCGCCGTGGATGGCGTCTCCCCAGTATGATGCAGCGGCGCCCATTTTAGTCCCGACTCCATCGCAGGTGGGCTATCCGTCAACTCCGATGATGGGGTTTATGGGTCAGGACCCTTTTGGAAACGGGCCGGGTTACCAGCAACCAAATTCAGATCAATACCAGCATCAAATGCTAGAGACTGCACCAACCTGGGCGCCTTCATCTCCATTTATGGGCAACAATTATGGATCTTTCCCGGATAGTAATATCCAACTAGCACCTCCTCAGCATCAGCAACCGCTTTCCGGTTACGGAGGGCAGTATGGTCAGTATCAATATTTTCAAGGGCAATCAGGTGAGCCGCAGCTGGTGAGGTTAGGGTCTTCGGCAACTAAAGAGGCTAGGAAGAAGAGGATGCAAAGGCAGAGAAGGACTTTGTCACACCACCATGGAAGGCATCATGGACACCAACAGAATCAGCATCCTAATCAAATGCCGGATCAAAGGCTAGTTGGGAACGCCGATCACAATTGCACTACTGCCGCAATGGGCAATCCGGCTGCTTCTAACTGGTTTTATTGGCCCACCACGGCGGCTGGTGGTCCTGCTCCTGCAGCCACACCGGCAATGATGCAAACGATGGCTCCCGAGGCAGCACCATTGGTGCTTCCAGTTGATCGTCCGGCCAGTCAAGGGCAGAATTATAATCCGGGCCGGATTAATACACAGGAAAGGCGACAGGGATGGAGACCTGAGAATAAGAATTTGAGGTTCCTTCTTCAGAAAGTGTTGAAGCAAAGTGATGTGGGCAATCTTGGAAGAATTGTTTTGCCAAAAAAAGAAGCCGAAACCCATCTTCCTGAGTTAGAGGCAAGGGACGGAATTTCAATTGCAATGGAAGACATCGGGACTTCTCGTGTATGGAACATGCGCTATAGGTACTGGCCCAACAACAAAAGCAGGATGTATCTCCTTGAAAACACAGGAGATTTTGTGAGGGCAAATGGACTCCAAGAAGGGGACTTCATAGTCATCTATTCAGACGTTAAGTGTAACAAATATGTATGGACATTTCTCTATTCAAATAATCCCTTATTATTATTTTCTTTCAAGTTTGATTATTCAATATTAGTTACTTCTGATGCACAGATGATAAGAGGAGTGAAGGTACGGCAAGCGGGGACTAAATCAGAGACCAAAAGGCCAGGAAAGTCGCAAAGGAACCAACATGCAAGCACTCCATCTGGCAACAATGGCTTGTCATCTAAGAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009657 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031930 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

837

Amino Acids

93.39

Weight (kDa)

6.35

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	673 - 767	1.6e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24650
fragaria_vesca	FvH4_2g19630 FvH4_2g19630
malus_domestica	MD05G1181100.v1.1 MD10G1169900.v1.1
prunus_persica	Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0285371
rosa_laevigata	RLG00000012648
rosa_multiflora	Rmu_co8422167.1_g000001 Rmu_co8482611.1_g000001 Rmu_sc0006662.1_g000002 Rmu_sc0012535.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183310
rosa_rugosa	Rorug06G0173900
rosa_samantha	Rh6AG284600 Rh6BG285800 Rh6CG286900 Rh6DG279900
rosa_wichuraiana	Rw6G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1941
AarI	CACCTGC	1 cut(s)	1312
AasI	GACNNNNNNGTC	2 cut(s)	514, 2264
AatII	GACGTC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	1312
AccB1I	GGYRCC	3 cut(s)	496, 1294, 1450
AccI	GTMKAC	1 cut(s)	1188
AccII	CGCG	3 cut(s)	548, 1061, 1152
AccIII	TCCGGA	1 cut(s)	946
AclWI	GGATC	4 cut(s)	294, 732, 1492, 1743
AcoI	YGGCCR	1 cut(s)	1920
AcsI	RAATTY	3 cut(s)	1402, 1999, 2118
AcuI	CTGAAG	1 cut(s)	2000
AcyI	GRCGYC	6 cut(s)	351, 399, 962, 1271, 1295, 1451
AfaI	GTAC	6 cut(s)	79, 162, 767, 1156, 2177, 2406
AfiI	CCNNNNNNNGG	8 cut(s)	853, 1000, 1062, 1349, 1469, 1541, 1929, 2254
AhdI	GACNNNNNGTC	1 cut(s)	961
AjnI	CCWGG	3 cut(s)	554, 1445, 2440
AloI	GAACNNNNNNTCC	2 cut(s)	228, 260
AluBI	AGCT	1 cut(s)	1603
AluI	AGCT	1 cut(s)	1603
Alw26I	GTCTC	6 cut(s)	749, 992, 1278, 1427, 1978, 2423
AlwI	GGATC	4 cut(s)	294, 732, 1492, 1743
Ama87I	CYCGRG	3 cut(s)	492, 1165, 1883
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	6 cut(s)	1382, 1817, 1920, 1948, 2180, 2438
ApeKI	GCWGC	7 cut(s)	88, 616, 1289, 1600, 1796, 1850, 1889
ApoI	RAATTY	3 cut(s)	1402, 1999, 2118
AseI	ATTAAT	1 cut(s)	1956
Asp700I	GAANNNNTTC	2 cut(s)	332, 415
AspLEI	GCGC	5 cut(s)	853, 1152, 1297, 1453, 2169
AspS9I	GGNCC	8 cut(s)	94, 838, 1366, 1382, 1818, 1838, 1948, 2181
AsuC2I	CCSGG	3 cut(s)	1386, 1493, 1947
AsuHPI	GGTGA	6 cut(s)	35, 281, 359, 514, 1604, 1618
AsuII	TTCGAA	1 cut(s)	780
AvaI	CYCGRG	3 cut(s)	492, 1165, 1883
AvaII	GGWCC	4 cut(s)	94, 838, 1366, 1838
AxyI	CCTNAGG	1 cut(s)	867
BaeI	ACNNNNGTAYC	2 cut(s)	1163, 1196
BanI	GGYRCC	3 cut(s)	496, 1294, 1450
BauI	CACGAG	1 cut(s)	2151
BbsI	GAAGAC	7 cut(s)	477, 512, 513, 531, 798, 1611, 2142
BbvCI	CCTCAGC	2 cut(s)	983, 1521
BbvI	GCAGC	7 cut(s)	100, 628, 1301, 1612, 1783, 1862, 1901
BceAI	ACGGC	5 cut(s)	271, 703, 1246, 1842, 2423
BcgI	CGANNNNNNTGC	4 cut(s)	395, 429, 478, 512
BciT130I	CCWGG	3 cut(s)	556, 1447, 2442
BciVI	GTATCC	1 cut(s)	1164
BcnI	CCSGG	3 cut(s)	1386, 1493, 1947
BcoDI	GTCTC	6 cut(s)	749, 992, 1278, 1427, 1978, 2423
BfaI	CTAG	6 cut(s)	81, 1224, 1430, 1511, 1638, 1745
BfmI	CTRYAG	2 cut(s)	1848, 2170
BfoI	RGCGCY	2 cut(s)	1298, 1454
BfuAI	ACCTGC	1 cut(s)	1312
BfuI	GTATCC	1 cut(s)	1164
BglI	GCCNNNNNGGC	1 cut(s)	1859
BglII	AGATCT	3 cut(s)	271, 708, 772
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	6 cut(s)	556, 1386, 1447, 1493, 1947, 2442
Bme18I	GGWCC	4 cut(s)	94, 838, 1366, 1838
BmeRI	GACNNNNNGTC	1 cut(s)	961
BmeT110I	CYCGRG	3 cut(s)	492, 1165, 1883
BmgT120I	GGNCC	8 cut(s)	94, 838, 1366, 1382, 1818, 1838, 1948, 2181
BmrFI	CCNGG	6 cut(s)	556, 1386, 1447, 1493, 1947, 2442
BmrI	ACTGGG	1 cut(s)	1273
BmuI	ACTGGG	1 cut(s)	1273
BpiI	GAAGAC	7 cut(s)	477, 512, 513, 531, 798, 1611, 2142
Bpu10I	CCTNAGC	2 cut(s)	983, 1521
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	588, 1136
BpuMI	CCSGG	3 cut(s)	1386, 1493, 1947
BsaBI	GATNNNNATC	2 cut(s)	669, 707
BsaHI	GRCGYC	6 cut(s)	351, 399, 962, 1271, 1295, 1451
BsaI	GGTCTC	2 cut(s)	1978, 2423
BsaWI	WCCGGW	2 cut(s)	946, 1541
BsaXI	ACNNNNNCTCC	8 cut(s)	228, 258, 1864, 1894, 2214, 2244, 2388, 2418
Bsc4I	CCNNNNNNNGG	8 cut(s)	853, 1000, 1062, 1349, 1469, 1541, 1929, 2254
Bse118I	RCCGGY	2 cut(s)	499, 1858
Bse1I	ACTGG	7 cut(s)	841, 1113, 1279, 1811, 1907, 1923, 2183
Bse21I	CCTNAGG	1 cut(s)	867
Bse3DI	GCAATG	4 cut(s)	436, 1788, 1869, 2136
Bse8I	GATNNNNATC	2 cut(s)	669, 707
BseAI	TCCGGA	1 cut(s)	946
BseBI	CCWGG	3 cut(s)	556, 1447, 2442
BseJI	GATNNNNATC	2 cut(s)	669, 707
BseLI	CCNNNNNNNGG	8 cut(s)	853, 1000, 1062, 1349, 1469, 1541, 1929, 2254
BseMI	GCAATG	4 cut(s)	436, 1788, 1869, 2136
BseMII	CTCAG	6 cut(s)	728, 881, 974, 1535, 1980, 2088
BseNI	ACTGG	7 cut(s)	841, 1113, 1279, 1811, 1907, 1923, 2183
BseRI	GAGGAG	6 cut(s)	97, 432, 855, 1036, 1509, 2409
BseXI	GCAGC	7 cut(s)	100, 628, 1301, 1612, 1783, 1862, 1901
BsgI	GTGCAG	1 cut(s)	1422
Bsh1236I	CGCG	3 cut(s)	548, 1061, 1152
BshFI	GGCC	6 cut(s)	1384, 1819, 1922, 1950, 2182, 2440
BshNI	GGYRCC	3 cut(s)	496, 1294, 1450
BsiHKCI	CYCGRG	3 cut(s)	492, 1165, 1883
BslFI	GGGAC	6 cut(s)	80, 1292, 2126, 2158, 2270, 2431
BslI	CCNNNNNNNGG	8 cut(s)	853, 1000, 1062, 1349, 1469, 1541, 1929, 2254
BsmAI	GTCTC	6 cut(s)	749, 992, 1278, 1427, 1978, 2423
BsmBI	CGTCTC	2 cut(s)	992, 1278
BsmFI	GGGAC	6 cut(s)	80, 1292, 2126, 2158, 2270, 2431
BsnI	GGCC	6 cut(s)	1384, 1819, 1922, 1950, 2182, 2440
Bso31I	GGTCTC	2 cut(s)	1978, 2423
BsoBI	CYCGRG	3 cut(s)	492, 1165, 1883
Bsp119I	TTCGAA	1 cut(s)	780
Bsp13I	TCCGGA	1 cut(s)	946
Bsp19I	CCATGG	3 cut(s)	228, 921, 1684
BspANI	GGCC	6 cut(s)	1384, 1819, 1922, 1950, 2182, 2440
BspCNI	CTCAG	6 cut(s)	727, 880, 975, 1534, 1981, 2089
BspEI	TCCGGA	1 cut(s)	946
BspFNI	CGCG	3 cut(s)	548, 1061, 1152
BspMAI	CTGCAG	1 cut(s)	1852
BspMI	ACCTGC	1 cut(s)	1312
BspPI	GGATC	4 cut(s)	294, 732, 1492, 1743
BspT104I	TTCGAA	1 cut(s)	780
BspT107I	GGYRCC	3 cut(s)	496, 1294, 1450
BspTNI	GGTCTC	2 cut(s)	1978, 2423
BsrDI	GCAATG	4 cut(s)	436, 1788, 1869, 2136
BsrFI	RCCGGY	2 cut(s)	499, 1858
BsrI	ACTGG	7 cut(s)	841, 1113, 1279, 1811, 1907, 1923, 2183
BssAI	RCCGGY	2 cut(s)	499, 1858
BssNI	GRCGYC	6 cut(s)	351, 399, 962, 1271, 1295, 1451
BssSI	CACGAG	1 cut(s)	2151
BssT1I	CCWWGG	3 cut(s)	228, 921, 1684
Bst2BI	CACGAG	1 cut(s)	2151
Bst2UI	CCWGG	3 cut(s)	556, 1447, 2442
Bst4CI	ACNGT	4 cut(s)	511, 1003, 1179, 2511
Bst6I	CTCTTC	3 cut(s)	393, 478, 1640
BstACI	GRCGYC	6 cut(s)	351, 399, 962, 1271, 1295, 1451
BstAPI	GCANNNNNTGC	1 cut(s)	1426
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	4 cut(s)	299, 882, 2412, 2470
BstDEI	CTNAG	7 cut(s)	714, 867, 983, 1521, 1989, 2097, 2502
BstDSI	CCRYGG	7 cut(s)	228, 253, 546, 921, 1262, 1684, 1824
BstEII	GGTNACC	1 cut(s)	1388
BstFNI	CGCG	3 cut(s)	548, 1061, 1152
BstH2I	RGCGCY	2 cut(s)	1298, 1454
BstHHI	GCGC	5 cut(s)	853, 1152, 1297, 1453, 2169
BstMAI	GTCTC	6 cut(s)	749, 992, 1278, 1427, 1978, 2423
BstMWI	GCNNNNNNNGC	7 cut(s)	557, 674, 1426, 1850, 1859, 1886, 2490
BstNI	CCWGG	3 cut(s)	556, 1447, 2442
BstNSI	RCATGY	4 cut(s)	466, 884, 2167, 2468
BstPI	GGTNACC	1 cut(s)	1388
BstSCI	CCNGG	6 cut(s)	554, 1384, 1445, 1491, 1945, 2440
BstSFI	CTRYAG	2 cut(s)	1848, 2170
BstUI	CGCG	3 cut(s)	548, 1061, 1152
BstV1I	GCAGC	7 cut(s)	100, 628, 1301, 1612, 1783, 1862, 1901
BstV2I	GAAGAC	7 cut(s)	477, 512, 513, 531, 798, 1611, 2142
BstX2I	RGATCY	5 cut(s)	271, 708, 724, 772, 1484
BstYI	RGATCY	5 cut(s)	271, 708, 724, 772, 1484
Bsu36I	CCTNAGG	1 cut(s)	867
BsuI	GTATCC	1 cut(s)	1164
BsuRI	GGCC	6 cut(s)	1384, 1819, 1922, 1950, 2182, 2440
BtgI	CCRYGG	7 cut(s)	228, 253, 546, 921, 1262, 1684, 1824
BtgZI	GCGATG	3 cut(s)	1103, 1242, 1302
BveI	ACCTGC	1 cut(s)	1312
Cac8I	GCNNGC	4 cut(s)	299, 882, 2412, 2470
CfoI	GCGC	5 cut(s)	853, 1152, 1297, 1453, 2169
Cfr10I	RCCGGY	2 cut(s)	499, 1858
Cfr13I	GGNCC	8 cut(s)	94, 838, 1366, 1382, 1818, 1838, 1948, 2181
Cfr42I	CCGCGG	1 cut(s)	549
CseI	GACGC	3 cut(s)	359, 951, 1260
Csp6I	GTAC	6 cut(s)	78, 161, 766, 1155, 2176, 2405
CviQI	GTAC	6 cut(s)	78, 161, 766, 1155, 2176, 2405
DdeI	CTNAG	7 cut(s)	714, 867, 983, 1521, 1989, 2097, 2502
DinI	GGCGCC	2 cut(s)	1296, 1452
DrdI	GACNNNNNNGTC	2 cut(s)	514, 2264
DriI	GACNNNNNGTC	1 cut(s)	961
DseDI	GACNNNNNNGTC	2 cut(s)	514, 2264
EaeI	YGGCCR	1 cut(s)	1920
Eam1104I	CTCTTC	3 cut(s)	393, 478, 1640
Eam1105I	GACNNNNNGTC	1 cut(s)	961
EarI	CTCTTC	3 cut(s)	393, 478, 1640
EciI	GGCGGA	1 cut(s)	1045
Eco130I	CCWWGG	3 cut(s)	228, 921, 1684
Eco31I	GGTCTC	2 cut(s)	1978, 2423
Eco47I	GGWCC	4 cut(s)	94, 838, 1366, 1838
Eco57I	CTGAAG	1 cut(s)	2000
Eco81I	CCTNAGG	1 cut(s)	867
Eco88I	CYCGRG	3 cut(s)	492, 1165, 1883
Eco91I	GGTNACC	1 cut(s)	1388
EcoO109I	RGGNCCY	2 cut(s)	94, 1366
EcoO65I	GGTNACC	1 cut(s)	1388
EcoRII	CCWGG	3 cut(s)	554, 1445, 2440
EcoT14I	CCWWGG	3 cut(s)	228, 921, 1684
EcoT22I	ATGCAT	1 cut(s)	882
EgeI	GGCGCC	2 cut(s)	1296, 1452
EheI	GGCGCC	2 cut(s)	1296, 1452
ErhI	CCWWGG	3 cut(s)	228, 921, 1684
Esp3I	CGTCTC	2 cut(s)	992, 1278
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	6 cut(s)	80, 1292, 2126, 2158, 2270, 2431
FauI	CCCGC	3 cut(s)	84, 670, 2407
FblI	GTMKAC	1 cut(s)	1188
FspBI	CTAG	6 cut(s)	81, 1224, 1430, 1511, 1638, 1745
GlaI	GCGC	5 cut(s)	852, 1151, 1296, 1452, 2168
HaeII	RGCGCY	2 cut(s)	1298, 1454
HaeIII	GGCC	6 cut(s)	1384, 1819, 1922, 1950, 2182, 2440
HgaI	GACGC	3 cut(s)	359, 951, 1260
HhaI	GCGC	5 cut(s)	853, 1152, 1297, 1453, 2169
Hin1I	GRCGYC	6 cut(s)	351, 399, 962, 1271, 1295, 1451
Hin6I	GCGC	5 cut(s)	851, 1150, 1295, 1451, 2167
HinP1I	GCGC	5 cut(s)	851, 1150, 1295, 1451, 2167
HincII	GTYRAC	3 cut(s)	403, 1044, 1338
HindII	GTYRAC	3 cut(s)	403, 1044, 1338
HphI	GGTGA	6 cut(s)	35, 281, 359, 514, 1604, 1618
Hpy166II	GTNNAC	5 cut(s)	253, 403, 1044, 1189, 1338
Hpy8I	GTNNAC	5 cut(s)	253, 403, 1044, 1189, 1338
Hpy99I	CGWCG	4 cut(s)	311, 410, 520, 724
HpyAV	CCTTC	8 cut(s)	338, 776, 1464, 1659, 1683, 2021, 2246, 2395
HpyCH4III	ACNGT	4 cut(s)	511, 1003, 1179, 2511
HpyCH4IV	ACGT	2 cut(s)	399, 2280
HpyF10VI	GCNNNNNNNGC	7 cut(s)	557, 674, 1426, 1850, 1859, 1886, 2490
HpyF3I	CTNAG	7 cut(s)	714, 867, 983, 1521, 1989, 2097, 2502
HpySE526I	ACGT	2 cut(s)	399, 2280
Hsp92I	GRCGYC	6 cut(s)	351, 399, 962, 1271, 1295, 1451
HspAI	GCGC	5 cut(s)	851, 1150, 1295, 1451, 2167
KasI	GGCGCC	2 cut(s)	1294, 1450
KflI	GGGWCCC	1 cut(s)	94
Kpn2I	TCCGGA	1 cut(s)	946
KspI	CCGCGG	1 cut(s)	549
LmnI	GCTCC	4 cut(s)	856, 1023, 1849, 1885
Lsp1109I	GCAGC	7 cut(s)	100, 628, 1301, 1612, 1783, 1862, 1901
MaeI	CTAG	6 cut(s)	81, 1224, 1430, 1511, 1638, 1745
MaeII	ACGT	2 cut(s)	399, 2280
MaeIII	GTNAC	8 cut(s)	347, 650, 1098, 1388, 1544, 1674, 2288, 2368
MfeI	CAATTG	2 cut(s)	1765, 2124
MflI	RGATCY	5 cut(s)	271, 708, 724, 772, 1484
Mly113I	GGCGCC	2 cut(s)	1295, 1451
MlyI	GAGTC	5 cut(s)	484, 1061, 1157, 1306, 2238
MmeI	TCCRAC	3 cut(s)	209, 702, 1531
Mph1103I	ATGCAT	1 cut(s)	882
MroI	TCCGGA	1 cut(s)	946
MroXI	GAANNNNTTC	2 cut(s)	332, 415
MseI	TTAA	4 cut(s)	122, 1230, 1956, 2283
MslI	CAYNNNNRTG	4 cut(s)	746, 920, 1261, 1683
MspA1I	CMGCKG	5 cut(s)	91, 356, 548, 1292, 1603
MspR9I	CCNGG	6 cut(s)	556, 1386, 1447, 1493, 1947, 2442
MunI	CAATTG	2 cut(s)	1765, 2124
MvaI	CCWGG	3 cut(s)	556, 1447, 2442
MvnI	CGCG	3 cut(s)	548, 1061, 1152
MwoI	GCNNNNNNNGC	7 cut(s)	557, 674, 1426, 1850, 1859, 1886, 2490
NarI	GGCGCC	2 cut(s)	1295, 1451
NciI	CCSGG	3 cut(s)	1386, 1493, 1947
NcoI	CCATGG	3 cut(s)	228, 921, 1684
NmeAIII	GCCGAG	2 cut(s)	506, 1036
NmuCI	GTSAC	2 cut(s)	347, 1674
NsiI	ATGCAT	1 cut(s)	882
NspI	RCATGY	4 cut(s)	466, 884, 2167, 2468
NspV	TTCGAA	1 cut(s)	780
PaeI	GCATGC	1 cut(s)	884
PaqCI	CACCTGC	1 cut(s)	1312
PcsI	WCGNNNNNNNCGW	3 cut(s)	533, 786, 795
PdmI	GAANNNNTTC	2 cut(s)	332, 415
PfeI	GAWTC	5 cut(s)	181, 383, 656, 826, 1711
PflFI	GACNNNGTC	2 cut(s)	511, 1672
PfoI	TCCNGGA	1 cut(s)	1491
PleI	GAGTC	5 cut(s)	484, 1060, 1157, 1306, 2238
PluTI	GGCGCC	2 cut(s)	1298, 1454
PpsI	GAGTC	5 cut(s)	484, 1060, 1157, 1306, 2238
PpuMI	RGGWCCY	2 cut(s)	94, 1366
PshBI	ATTAAT	1 cut(s)	1956
PsiI	TTATAA	1 cut(s)	1941
Psp5II	RGGWCCY	2 cut(s)	94, 1366
Psp6I	CCWGG	3 cut(s)	554, 1445, 2440
PspEI	GGTNACC	1 cut(s)	1388
PspGI	CCWGG	3 cut(s)	554, 1445, 2440
PspPI	GGNCC	8 cut(s)	94, 838, 1366, 1382, 1818, 1838, 1948, 2181
PspPPI	RGGWCCY	2 cut(s)	94, 1366
PstI	CTGCAG	1 cut(s)	1852
PsuI	RGATCY	5 cut(s)	271, 708, 724, 772, 1484
PsyI	GACNNNGTC	2 cut(s)	511, 1672
PvuII	CAGCTG	1 cut(s)	1603
RsaI	GTAC	6 cut(s)	79, 162, 767, 1156, 2177, 2406
RsaNI	GTAC	6 cut(s)	78, 161, 766, 1155, 2176, 2405
RseI	CAYNNNNRTG	4 cut(s)	746, 920, 1261, 1683
SacII	CCGCGG	1 cut(s)	549
SaqAI	TTAA	4 cut(s)	122, 1230, 1956, 2283
Sau96I	GGNCC	8 cut(s)	94, 838, 1366, 1382, 1818, 1838, 1948, 2181
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	5 cut(s)	484, 1061, 1157, 1306, 2238
ScrFI	CCNGG	6 cut(s)	556, 1386, 1447, 1493, 1947, 2442
SfcI	CTRYAG	2 cut(s)	1848, 2170
SfoI	GGCGCC	2 cut(s)	1296, 1452
Sfr303I	CCGCGG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	780
SgrBI	CCGCGG	1 cut(s)	549
SinI	GGWCC	4 cut(s)	94, 838, 1366, 1838
SmiMI	CAYNNNNRTG	4 cut(s)	746, 920, 1261, 1683
SmlI	CTYRAG	2 cut(s)	603, 1115
SmoI	CTYRAG	2 cut(s)	603, 1115
SphI	GCATGC	1 cut(s)	884
SspDI	GGCGCC	2 cut(s)	1294, 1450
SspI	AATATT	2 cut(s)	1574, 2364
SspMI	CTAG	6 cut(s)	81, 1224, 1430, 1511, 1638, 1745
StyD4I	CCNGG	6 cut(s)	554, 1384, 1445, 1491, 1945, 2440
StyI	CCWWGG	3 cut(s)	228, 921, 1684
TaaI	ACNGT	4 cut(s)	511, 1003, 1179, 2511
TaiI	ACGT	2 cut(s)	402, 2283
TaqI	TCGA	6 cut(s)	64, 488, 701, 780, 798, 1050
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	7 cut(s)	356, 551, 1061, 1295, 1600, 1781, 1832
TfiI	GAWTC	5 cut(s)	181, 383, 656, 826, 1711
Tru1I	TTAA	4 cut(s)	122, 1230, 1956, 2283
Tru9I	TTAA	4 cut(s)	122, 1230, 1956, 2283
TseFI	GTSAC	2 cut(s)	347, 1674
TseI	GCWGC	7 cut(s)	88, 616, 1289, 1600, 1796, 1850, 1889
Tsp45I	GTSAC	2 cut(s)	347, 1674
TspDTI	ATGAA	3 cut(s)	1106, 1446, 2251
TspGWI	ACGGA	5 cut(s)	148, 423, 1323, 1563, 2130
Tth111I	GACNNNGTC	2 cut(s)	511, 1672
VpaK11BI	GGWCC	4 cut(s)	94, 838, 1366, 1838
VspI	ATTAAT	1 cut(s)	1956
XapI	RAATTY	3 cut(s)	1402, 1999, 2118
XceI	RCATGY	4 cut(s)	466, 884, 2167, 2468
XcmI	CCANNNNNNNNNTGG	2 cut(s)	275, 700
XmiI	GTMKAC	1 cut(s)	1188
XmnI	GAANNNNTTC	2 cut(s)	332, 415
XspI	CTAG	6 cut(s)	81, 1224, 1430, 1511, 1638, 1745
ZraI	GACGTC	1 cut(s)	400
ZrmI	AGTACT	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.