RchiOBHm_Chr6g0290191

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016244
Physical Location & Seq
Forward (+)
53302809 .. 53303902
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
ATGATGACACCGAAGATCAACTTGGAAGTCGGAGAGATCCTCCGCCACCGCCGACTCTACCCATCGATGGTGGACAGCCCGGAGCTCCGCTGGGCCTTCATTCTCAAAGTCTATGCCATCCTCACCGTCCAGTTGCTCCTCACCATTGCCGTCGCCGCCACCGTCGATTTGGTCCGTCCGATCGCTTACTTCCTCTTCAAAACCCTCGCCGGCTTGCTGTCAATATCACCGGCCGTCTTCGTCATTGCCCTCGGCTTGCTGGTTGCTTTGCTCTTTTACGCCACTAAGCACCCGGTGAATAACCTCTTGATTGGGCTTTTCACCATCTGTCTTGGACTTATGGTTGGAGTGGTTGTGATTTGGGGATTTGGGGATATATCTAGTTGCAATTGGGTGACATTGTGCAGTTTGATGAATTGGAAAACAGAGAAGGTGATTTTGGAGGCTTGGGGTCTAACCACTGTGATTTTCATTGGCTTGACATTGTACACATTCTGGGCTACAAGGAGAGGCCGCGATTTCGGCTTTCTTGGTCCTTTTCTATTTGCAGCTTTGGTTATTTTTCACCCTTTGGGTAAGATCAGTCATATGATATACGGCATTGTGGGTTGTATCATCTTCTGTTACTACATTGTCTATGACATGGATAAGCTGATTAAGCGCCACCACTATGACGACTACATGCTGGCTGCAATCGAGCTGTATTTGGATGTGATCGCAGCTAGTGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

244

Amino Acids

27.51

Weight (kDa)

8.24

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 32 - 239 7.4e-27 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 516
AciI CCGC 5 cut(s) 43, 49, 88, 156, 514
AclWI GGATC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 3 cut(s) 37, 422, 454
AluBI AGCT 6 cut(s) 85, 551, 652, 700, 722, 732
AluI AGCT 6 cut(s) 85, 551, 652, 700, 722, 732
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 1 cut(s) 31
AoxI GGCC 3 cut(s) 93, 231, 511
ApeKI GCWGC 3 cut(s) 548, 689, 719
AspLEI GCGC 1 cut(s) 663
AspS9I GGNCC 3 cut(s) 93, 172, 533
AsuC2I CCSGG 2 cut(s) 80, 293
AsuHPI GGTGA 8 cut(s) 115, 133, 219, 307, 313, 406, 445, 557
AvaII GGWCC 2 cut(s) 172, 533
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 560, 676, 731
BccI CCATC 4 cut(s) 61, 70, 125, 332
BceAI ACGGC 3 cut(s) 134, 218, 613
BcnI CCSGG 2 cut(s) 80, 293
BfaI CTAG 2 cut(s) 381, 723
BfoI RGCGCY 1 cut(s) 664
BisI GCNGC 5 cut(s) 156, 514, 549, 690, 720
BlsI GCNGC 5 cut(s) 157, 515, 550, 691, 721
Bme1390I CCNGG 2 cut(s) 80, 293
Bme18I GGWCC 2 cut(s) 172, 533
BmgT120I GGNCC 3 cut(s) 93, 172, 533
BmrFI CCNGG 2 cut(s) 80, 293
BpiI GAAGAC 1 cut(s) 229
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpuMI CCSGG 2 cut(s) 80, 293
Bsa29I ATCGAT 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 2 cut(s) 209, 229
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 2 cut(s) 144, 243
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 117, 715
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 2 cut(s) 144, 243
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 128
BseX3I CGGCCG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 560, 676, 731
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 516
Bsh1285I CGRYCG 2 cut(s) 183, 234
BshFI GGCC 3 cut(s) 95, 233, 513
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 2 cut(s) 183, 234
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 4 cut(s) 80, 210, 230, 293
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 3 cut(s) 95, 233, 513
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 5 cut(s) 15, 36, 180, 579, 714
BspACI CCGC 5 cut(s) 43, 49, 88, 156, 514
BspANI GGCC 3 cut(s) 95, 233, 513
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 1 cut(s) 516
BspPI GGATC 1 cut(s) 31
BsrDI GCAATG 2 cut(s) 144, 243
BsrFI RCCGGY 2 cut(s) 209, 229
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 2 cut(s) 209, 229
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 5 cut(s) 15, 36, 180, 579, 714
Bst4CI ACNGT 3 cut(s) 127, 163, 463
Bst6I CTCTTC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 4 cut(s) 211, 215, 257, 687
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 117, 715
BstFNI CGCG 1 cut(s) 516
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 5 cut(s) 18, 39, 183, 582, 717
BstMBI GATC 5 cut(s) 15, 36, 180, 579, 714
BstMCI CGRYCG 2 cut(s) 183, 234
BstMWI GCNNNNNNNGC 3 cut(s) 155, 522, 658
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 2 cut(s) 78, 291
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 3 cut(s) 560, 676, 731
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 65
BsuRI GGCC 3 cut(s) 95, 233, 513
BsuTUI ATCGAT 1 cut(s) 65
BtsCI GGATG 2 cut(s) 117, 715
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 4 cut(s) 211, 215, 257, 687
CfoI GCGC 1 cut(s) 663
Cfr10I RCCGGY 2 cut(s) 209, 229
Cfr13I GGNCC 3 cut(s) 93, 172, 533
ClaI ATCGAT 1 cut(s) 65
Csp6I GTAC 1 cut(s) 487
CviAII CATG 2 cut(s) 643, 682
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 1 cut(s) 285
DpnI GATC 5 cut(s) 17, 38, 182, 581, 716
DpnII GATC 5 cut(s) 15, 36, 180, 579, 714
DraIII CACNNNGTG 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 231
EagI CGGCCG 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 172, 533
Eco52I CGGCCG 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 2 cut(s) 646, 685
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 642, 681
FauNDI CATATG 1 cut(s) 588
Fnu4HI GCNGC 5 cut(s) 156, 514, 549, 690, 720
FokI GGATG 2 cut(s) 104, 722
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 156, 514, 549, 690, 720
FspBI CTAG 2 cut(s) 381, 723
GlaI GCGC 1 cut(s) 662
GluI GCNGC 5 cut(s) 156, 514, 549, 690, 720
GsaI CCCAGC 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 3 cut(s) 95, 233, 513
HapII CCGG 4 cut(s) 80, 210, 230, 293
HhaI GCGC 1 cut(s) 663
Hin1II CATG 2 cut(s) 646, 685
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HinfI GANTC 1 cut(s) 54
HpaII CCGG 4 cut(s) 80, 210, 230, 293
HphI GGTGA 8 cut(s) 115, 133, 219, 307, 313, 406, 445, 557
Hpy166II GTNNAC 2 cut(s) 73, 489
Hpy188I TCNGA 2 cut(s) 32, 180
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 2 cut(s) 73, 489
Hpy99I CGWCG 2 cut(s) 155, 167
HpyAV CCTTC 2 cut(s) 106, 424
HpyCH4III ACNGT 3 cut(s) 127, 163, 463
HpyCH4V TGCA 4 cut(s) 387, 405, 548, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 522, 658
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 2 cut(s) 646, 685
HspAI GCGC 1 cut(s) 661
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 5 cut(s) 15, 36, 180, 579, 714
LmnI GCTCC 3 cut(s) 82, 90, 141
LpnPI CCDG 9 cut(s) 76, 93, 143, 223, 243, 245, 306, 481, 671
Lsp1109I GCAGC 3 cut(s) 560, 676, 731
MaeI CTAG 2 cut(s) 381, 723
MaeIII GTNAC 2 cut(s) 394, 623
MalI GATC 5 cut(s) 17, 38, 182, 581, 716
MboI GATC 5 cut(s) 15, 36, 180, 579, 714
MboII GAAGA 4 cut(s) 25, 187, 229, 610
MfeI CAATTG 1 cut(s) 388
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 388, 415
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 2 cut(s) 10, 325
MnlI CCTC 9 cut(s) 50, 131, 149, 203, 215, 260, 314, 436, 503
MroNI GCCGGC 1 cut(s) 209
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 4 cut(s) 80, 210, 230, 293
MspR9I CCNGG 2 cut(s) 80, 293
MunI CAATTG 1 cut(s) 388
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 3 cut(s) 155, 522, 658
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 2 cut(s) 80, 293
NdeI CATATG 1 cut(s) 588
NdeII GATC 5 cut(s) 15, 36, 180, 579, 714
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 646, 685
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 211
PkrI GCNGC 5 cut(s) 157, 515, 550, 691, 721
Ple19I CGATCG 1 cut(s) 183
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 90
PspPI GGNCC 3 cut(s) 93, 172, 533
PsuI RGATCY 1 cut(s) 36
PvuI CGATCG 1 cut(s) 183
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 5 cut(s) 156, 514, 549, 690, 720
Sau3AI GATC 5 cut(s) 15, 36, 180, 579, 714
Sau96I GGNCC 3 cut(s) 93, 172, 533
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 80, 293
SduI GDGCHC 1 cut(s) 87
SetI ASST 8 cut(s) 87, 306, 435, 553, 654, 702, 724, 734
SinI GGWCC 2 cut(s) 172, 533
SmiMI CAYNNNNRTG 1 cut(s) 669
Sse9I AATT 2 cut(s) 388, 415
SsiI CCGC 5 cut(s) 43, 49, 88, 156, 514
SspMI CTAG 2 cut(s) 381, 723
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 78, 291
TaaI ACNGT 3 cut(s) 127, 163, 463
TaqI TCGA 3 cut(s) 65, 165, 696
TasI AATT 2 cut(s) 388, 415
TatI WGTACW 1 cut(s) 486
TauI GCSGC 2 cut(s) 158, 516
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 548, 689, 719
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 88, 428, 460
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 172, 533
XceI RCATGY 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 2 cut(s) 381, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.