RchiOBHm_Chr5g0014521

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016801
Physical Location & Seq
Forward (+)
10016073 .. 10017018
946 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGCAGGTTGCAAAGATGATCAGCAGCGACGCGGCAGCGACAGCAGAAGCGGAAGCGAGTCGTCACGGTATGATGAGCCGGCCCTACGAGATGGTGAGGCAGCTAGGGTCATGCAACGCGGTGGTTGTGTTCAGCGCGAGCGGCTGCCCAATGTGCACCGTGGCCGAGCGCCTCCTCTTCAGCCTAGGAGTTGGCCCCACCATCGTGGAGCTGGACCGCCACGTGGAGGGGCCGGACATAAGGGAGGTGCTCCGAGAGCTGGCGGATGGGCAGGGGCAGCAGCAGCCGGTTCCGGCGGTGTTCATTGGAGGGAAGTTCTTGGGCGGCGTGGAGGCACTGATGGCTTGCCACATCAACGGCAACCTCGTCCCTCTTCTCAAGCACTCCGGCGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

134

Amino Acids

14.22

Weight (kDa)

5.74

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 41 - 106 3e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 3 cut(s) 32, 119, 137
AciI CCGC 8 cut(s) 32, 50, 119, 141, 217, 263, 296, 324
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 163
AcvI CACGTG 1 cut(s) 223
AfiI CCNNNNNNNGG 3 cut(s) 223, 226, 259
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 3 cut(s) 103, 211, 259
AluI AGCT 3 cut(s) 103, 211, 259
Alw21I GWGCWC 2 cut(s) 158, 252
Alw44I GTGCAC 1 cut(s) 154
AoxI GGCC 4 cut(s) 80, 162, 193, 230
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 7 cut(s) 24, 35, 100, 144, 277, 280, 283
AspA2I CCTAGG 1 cut(s) 184
AspLEI GCGC 3 cut(s) 137, 171, 392
AspS9I GGNCC 4 cut(s) 81, 194, 214, 230
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 158
BbrPI CACGTG 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 158, 252
BbvI GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
BccI CCATC 4 cut(s) 85, 209, 260, 334
BceAI ACGGC 1 cut(s) 373
BclI TGATCA 1 cut(s) 18
BfaI CTAG 2 cut(s) 104, 185
BfoI RGCGCY 2 cut(s) 172, 393
BlnI CCTAGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 4 cut(s) 81, 194, 214, 230
BmiI GGNNCC 3 cut(s) 196, 231, 291
BpuEI CTTGAG 1 cut(s) 362
BsaAI YACGTR 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 159, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 226, 259
Bse118I RCCGGY 2 cut(s) 78, 286
BseDI CCNNGG 2 cut(s) 159, 184
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 223, 226, 259
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
Bsh1236I CGCG 3 cut(s) 32, 119, 137
BshFI GGCC 4 cut(s) 82, 164, 195, 232
BsiHKAI GWGCWC 2 cut(s) 158, 252
BsiSI CCGG 5 cut(s) 79, 233, 287, 293, 387
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 3 cut(s) 223, 226, 259
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 4 cut(s) 82, 164, 195, 232
Bsp1286I GDGCHC 2 cut(s) 158, 252
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 8 cut(s) 32, 50, 119, 141, 217, 263, 296, 324
BspANI GGCC 4 cut(s) 82, 164, 195, 232
BspFNI CGCG 3 cut(s) 32, 119, 137
BspLI GGNNCC 3 cut(s) 196, 231, 291
BsrBI CCGCTC 1 cut(s) 141
BsrFI RCCGGY 2 cut(s) 78, 286
BssAI RCCGGY 2 cut(s) 78, 286
BssECI CCNNGG 2 cut(s) 159, 184
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 68, 160
Bst6I CTCTTC 2 cut(s) 182, 378
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 4 cut(s) 80, 139, 261, 346
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 3 cut(s) 32, 119, 137
BstH2I RGCGCY 2 cut(s) 172, 393
BstHHI GCGC 3 cut(s) 137, 171, 392
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 3 cut(s) 32, 119, 137
BstV1I GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 4 cut(s) 82, 164, 195, 232
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 4 cut(s) 80, 139, 261, 346
CfoI GCGC 3 cut(s) 137, 171, 392
Cfr10I RCCGGY 2 cut(s) 78, 286
Cfr13I GGNCC 4 cut(s) 81, 194, 214, 230
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 111
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 182, 378
EarI CTCTTC 2 cut(s) 182, 378
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 163
Eco72I CACGTG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 114
FaiI YATR 3 cut(s) 71, 112, 239
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 110
FbaI TGATCA 1 cut(s) 18
FokI GGATG 1 cut(s) 278
FspBI CTAG 2 cut(s) 104, 185
GlaI GCGC 3 cut(s) 136, 170, 391
HaeII RGCGCY 2 cut(s) 172, 393
HaeIII GGCC 4 cut(s) 82, 164, 195, 232
HapII CCGG 5 cut(s) 79, 233, 287, 293, 387
HgaI GACGC 1 cut(s) 38
HhaI GCGC 3 cut(s) 137, 171, 392
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 3 cut(s) 135, 169, 390
HinP1I GCGC 3 cut(s) 135, 169, 390
HinfI GANTC 1 cut(s) 58
HpaII CCGG 5 cut(s) 79, 233, 287, 293, 387
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 254, 404
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 68, 160
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 4, 11, 114, 156
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 3 cut(s) 135, 169, 390
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 208, 255
LpnPI CCDG 9 cut(s) 92, 197, 245, 246, 257, 300, 306, 382, 400
Lsp1109I GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
MaeI CTAG 2 cut(s) 104, 185
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 20
MbiI CCGCTC 1 cut(s) 141
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 169, 365
MhlI GDGCHC 2 cut(s) 158, 252
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 9 cut(s) 90, 182, 185, 220, 238, 302, 325, 374, 381
MroNI GCCGGC 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 5 cut(s) 79, 233, 287, 293, 387
MvnI CGCG 3 cut(s) 32, 119, 137
MwoI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
NaeI GCCGGC 1 cut(s) 80
NdeII GATC 1 cut(s) 18
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 3 cut(s) 196, 231, 291
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 66
PmaCI CACGTG 1 cut(s) 223
PmlI CACGTG 1 cut(s) 223
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 223
PspCI CACGTG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 196, 231, 291
PspPI GGNCC 4 cut(s) 81, 194, 214, 230
RseI CAYNNNNRTG 1 cut(s) 203
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 4 cut(s) 81, 194, 214, 230
SchI GAGTC 1 cut(s) 67
SduI GDGCHC 2 cut(s) 158, 252
SetI ASST 7 cut(s) 9, 105, 213, 225, 249, 261, 366
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SsiI CCGC 8 cut(s) 32, 50, 119, 141, 217, 263, 296, 324
SspMI CTAG 2 cut(s) 104, 185
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 68, 160
TaiI ACGT 1 cut(s) 225
TauI GCSGC 3 cut(s) 35, 144, 327
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 7 cut(s) 24, 35, 100, 144, 277, 280, 283
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 292
TspRI CASTG 1 cut(s) 342
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmaJI CCTAGG 1 cut(s) 184
XspI CTAG 2 cut(s) 104, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.