Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012594

Physical Location & Seq

Genomic Coordinates Forward (+)

10440670 .. 10443823

Gene Structure 3154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATGAAGAGAAGGTCGACTCCGTACGGCAGGGACATGCCGTCTTCTACGACCAAGGACGAGGAAGTTGAGTGGGAAATGAGACCGGGAGGAATGTTGGTCCAGAAAAGAGTCGACAAGTCATCTGACGTTGCCCCGGTTCCGAACTTACGGCTTCGGATTGCTTTCGGTGCTCTCCGGTACGAGATCTCCGCCAGCTCTCAATCCACCTTTGGGGAGTTGAAGAAGGTTCTTACGGCAGAGACGGGGTTACAGCCCGGAGACCAGAGGCTAATATTCAGGGGAAAAGAGCGAGAAAACAGGGAGTACTTGGACATGTGCGGAGTCAAAGACCGATCAAAAGTCATGCTAATCGAGGACCCAGCGAGCATCGAGAGAAGAGCCAATGACATGCGGAGGAAAGCGAAGATCCAGACCGCTCATCGCGCCATCTCGGACGTGTGCTTGGAGGTCGACAAGCTCGCGGAGCAGGTCTCTGCTATTGAAAAATCTATCTCAAATGGAGTCAGGGTACCAGAAGTTCAGATCACCACACTAATTGAGATGCTTATGAGACAAGCAATCAAGCTGGACAACATTTCTGCAGAAGGAGATGCTTCTGCTCAAAAGAGTTTGCAGGGCAAGAGGGTGCAGAAATGTGTTGAAACTCTTGATGCGATGAAGATATCAAATGCAAAGGTAAAGCCTGTGGTTGTGACAACCAAGTGGGAAACCTTTGATCCTCCTCCGACTACAGCCAAATGGGAATTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

252

Amino Acids

28.45

Weight (kDa)

9.17

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	61 - 118	1.8e-08	Ubiquitin family
BAG	PF02179	144 - 219	5.3e-12	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09490 FvH4_3g09490 FvH4_3g09490
malus_domestica	MD05G1277400.v1.1 MD10G1256300.v1.1
prunus_persica	Prupe.4G087300_v2.0.a1
pyrus_communis	pycom05g25850
rosa_chinensis	RchiOBHm_Chr5g0015071
rosa_laevigata	RLG00000032167
rosa_multiflora	Rmu_co8401769.1_g000001 Rmu_sc0002209.1_g000001 Rmu_sc0009777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061460
rosa_rugosa	Rorug05G0024100
rosa_samantha	Rh5AG118500 Rh5BG116400 Rh5CG127300 Rh5DG115300
rosa_wichuraiana	Rw5G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	419
AccI	GTMKAC	3 cut(s)	17, 114, 453
AccII	CGCG	2 cut(s)	426, 464
AciI	CCGC	5 cut(s)	192, 321, 394, 417, 464
AclWI	GGATC	2 cut(s)	403, 713
AcsI	RAATTY	1 cut(s)	746
AfaI	GTAC	4 cut(s)	26, 182, 308, 513
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflIII	ACRYGT	2 cut(s)	315, 438
AgsI	TTSAA	3 cut(s)	223, 485, 644
AhdI	GACNNNNNGTC	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	1 cut(s)	731
AluBI	AGCT	3 cut(s)	198, 460, 568
AluI	AGCT	3 cut(s)	198, 460, 568
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	5 cut(s)	76, 236, 255, 478, 547
AlwI	GGATC	2 cut(s)	403, 713
ApoI	RAATTY	1 cut(s)	746
Asp718I	GGTACC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	100, 358
AsuC2I	CCSGG	3 cut(s)	87, 137, 258
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	2 cut(s)	100, 358
BanI	GGYRCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	4 cut(s)	25, 43, 167, 252
BcnI	CCSGG	3 cut(s)	87, 137, 258
BcoDI	GTCTC	5 cut(s)	76, 236, 255, 478, 547
BfmI	CTRYAG	2 cut(s)	582, 732
BfuAI	ACCTGC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	186
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	87, 137, 258
Bme18I	GGWCC	2 cut(s)	100, 358
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	100, 358
BmiI	GGNNCC	3 cut(s)	141, 360, 513
BmrFI	CCNGG	3 cut(s)	87, 137, 258
BmsI	GCATC	4 cut(s)	378, 534, 583, 643
BpiI	GAAGAC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpuMI	CCSGG	3 cut(s)	87, 137, 258
BsaI	GGTCTC	3 cut(s)	76, 255, 478
BsaJI	CCNNGG	2 cut(s)	54, 135
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	54, 135
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	714
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	426, 464
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	4 cut(s)	86, 137, 178, 258
BsiWI	CGTACG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	5 cut(s)	76, 236, 255, 478, 547
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	47
Bso31I	GGTCTC	3 cut(s)	76, 255, 478
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	186, 335, 408, 525, 718
BspACI	CCGC	5 cut(s)	192, 321, 394, 417, 464
BspFNI	CGCG	2 cut(s)	426, 464
BspLI	GGNNCC	3 cut(s)	141, 360, 513
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	2 cut(s)	403, 713
BspQI	GCTCTTC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	511
BspTNI	GGTCTC	3 cut(s)	76, 255, 478
BsrBI	CCGCTC	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	54, 135
BssMI	GATC	5 cut(s)	186, 335, 408, 525, 718
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	2 cut(s)	2, 373
BstC8I	GCNNGC	3 cut(s)	196, 367, 462
BstFNI	CGCG	2 cut(s)	426, 464
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	5 cut(s)	189, 338, 411, 528, 721
BstMAI	GTCTC	5 cut(s)	76, 236, 255, 478, 547
BstMBI	GATC	5 cut(s)	186, 335, 408, 525, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 425, 466
BstNSI	RCATGY	3 cut(s)	40, 319, 394
BstSCI	CCNGG	3 cut(s)	85, 135, 256
BstSFI	CTRYAG	2 cut(s)	582, 732
BstUI	CGCG	2 cut(s)	426, 464
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	186, 408
BstYI	RGATCY	2 cut(s)	186, 408
BtgZI	GCGATG	2 cut(s)	407, 671
BtrI	CACGTC	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	196, 367, 462
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	100, 358
Csp6I	GTAC	4 cut(s)	25, 181, 307, 512
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	4 cut(s)	37, 316, 346, 391
CviJI	RGCY	9 cut(s)	154, 198, 256, 271, 383, 460, 568, 685, 737
CviKI_1	RGCY	9 cut(s)	154, 198, 256, 271, 383, 460, 568, 685, 737
CviQI	GTAC	4 cut(s)	25, 181, 307, 512
DpnI	GATC	5 cut(s)	188, 337, 410, 527, 720
DpnII	GATC	5 cut(s)	186, 335, 408, 525, 718
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	2, 373
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	2 cut(s)	2, 373
EciI	GGCGGA	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	3 cut(s)	76, 255, 478
Eco32I	GATATC	1 cut(s)	666
Eco47I	GGWCC	2 cut(s)	100, 358
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	4 cut(s)	40, 319, 349, 394
FaiI	YATR	5 cut(s)	38, 317, 347, 392, 551
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	36, 315, 345, 390
FblI	GTMKAC	3 cut(s)	17, 114, 453
GlaI	GCGC	1 cut(s)	427
GsaI	CCCAGC	1 cut(s)	365
HapII	CCGG	4 cut(s)	86, 137, 178, 258
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	40, 319, 349, 394
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	3 cut(s)	18, 115, 454
HindII	GTYRAC	3 cut(s)	18, 115, 454
HinfI	GANTC	4 cut(s)	19, 111, 324, 504
HpaII	CCGG	4 cut(s)	86, 137, 178, 258
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	3 cut(s)	18, 115, 454
Hpy188I	TCNGA	6 cut(s)	127, 144, 159, 436, 525, 729
Hpy188III	TCNNGA	4 cut(s)	103, 373, 412, 650
Hpy8I	GTNNAC	3 cut(s)	18, 115, 454
HpyAV	CCTTC	3 cut(s)	6, 220, 581
HpyCH4IV	ACGT	2 cut(s)	129, 438
HpyCH4V	TGCA	4 cut(s)	584, 616, 631, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 425, 466
HpySE526I	ACGT	2 cut(s)	129, 438
Hsp92II	CATG	4 cut(s)	40, 319, 349, 394
HspAI	GCGC	1 cut(s)	426
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	5 cut(s)	186, 335, 408, 525, 718
LguI	GCTCTTC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	466
LweI	GCATC	4 cut(s)	378, 534, 583, 643
MaeII	ACGT	2 cut(s)	129, 438
MaeIII	GTNAC	2 cut(s)	249, 694
MalI	GATC	5 cut(s)	188, 337, 410, 527, 720
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	5 cut(s)	186, 335, 408, 525, 718
MboII	GAAGA	6 cut(s)	19, 36, 235, 390, 418, 673
MflI	RGATCY	2 cut(s)	186, 408
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	537, 746
MlyI	GAGTC	4 cut(s)	13, 120, 333, 513
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	9 cut(s)	55, 83, 261, 349, 390, 442, 618, 732, 735
MseI	TTAA	1 cut(s)	757
MspI	CCGG	4 cut(s)	86, 137, 178, 258
MspR9I	CCNGG	3 cut(s)	87, 137, 258
MvnI	CGCG	2 cut(s)	426, 464
MwoI	GCNNNNNNNGC	3 cut(s)	170, 425, 466
NciI	CCSGG	3 cut(s)	87, 137, 258
NdeII	GATC	5 cut(s)	186, 335, 408, 525, 718
NlaIII	CATG	4 cut(s)	40, 319, 349, 394
NlaIV	GGNNCC	3 cut(s)	141, 360, 513
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	3 cut(s)	40, 319, 394
PciI	ACATGT	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	373
Pfl23II	CGTACG	1 cut(s)	24
PleI	GAGTC	4 cut(s)	13, 119, 332, 512
PpsI	GAGTC	4 cut(s)	13, 119, 332, 512
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	361
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	141, 360, 513
PspPI	GGNCC	2 cut(s)	100, 358
PspPPI	RGGWCCY	1 cut(s)	358
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	186, 408
RsaI	GTAC	4 cut(s)	26, 182, 308, 513
RsaNI	GTAC	4 cut(s)	25, 181, 307, 512
SalI	GTCGAC	3 cut(s)	16, 113, 452
SapI	GCTCTTC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	757
Sau3AI	GATC	5 cut(s)	186, 335, 408, 525, 718
Sau96I	GGNCC	2 cut(s)	100, 358
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	4 cut(s)	13, 120, 333, 513
ScrFI	CCNGG	3 cut(s)	87, 137, 258
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	4 cut(s)	378, 534, 583, 643
SfcI	CTRYAG	2 cut(s)	582, 732
SinI	GGWCC	2 cut(s)	100, 358
Sse9I	AATT	2 cut(s)	537, 746
SsiI	CCGC	5 cut(s)	192, 321, 394, 417, 464
SspI	AATATT	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	85, 135, 256
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	132, 441
TaqI	TCGA	5 cut(s)	17, 114, 354, 372, 453
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	2 cut(s)	537, 746
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	757
Tru9I	TTAA	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	694
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	2 cut(s)	20, 674
TspGWI	ACGGA	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	100, 358
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	3 cut(s)	40, 319, 394
XmiI	GTMKAC	3 cut(s)	17, 114, 453
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.