RchiOBHm_Chr5g0021241

Mitochondrial translocator assembly and maintenance protein 41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003914
Physical Location & Seq
Forward (+)
15511696 .. 15515021
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
ATGGAGAATCACAGCAAAACCCAGCTTCAAAGTTTCCTCAAACATCTTCCTCCTGTTGAGTTCTGCTGTGTTTATGGGTCATCACTACACCCAAATCGTGACAATGCCAAGTCAACAATGGTGGATTGCATTCTTGGAGTATCAGATCCCCTACAATGGCATTCTGAGAATCTGAAAGTGAACAAGGATCACTATGCCTCTTGGATGTCGCTGCTCGGTGGGGCCAGACTGGTTACTAATGTTGCAGATTACATAGGTGTGGGAGTGCACTTCAATCCTTTTGTTAGTTGGAACGACAAGATGTTCAAGTATGGGGTTGTCAGCATGCACGACTTGGTGCAGGACATATCAAATTGGGAGAGGTTCTACTTGAGTGGCCGGTTACAAAAGCCGGTTCAAATAATTTCTGATAATTTGAATGTTGGAAATGTAAACTCAGTTAATTTGAGGGCTGCAATAGCTGCTGCTCTCCTTCTTTTGCCATCCAAGTTCACTGAGGAGGATCTGTATGCCAAAATATGTAGCCTCTCATATATGGGTGACTTGCGTATGCTCTTTGCAGAAGACAGAAATAAGGTGAAGAAAATAGTACAAGGGCAATTTGAGTTGTTTCGGTCAATGTATAAGCCATTTATTCAAGAGTATGAGACTAATGAGTTGTTGAGATACTCATTGTCTGGAAATCCTCCACCAGTCCTTTCTCAGGATTGTGATTTATCAGCAGCTCGATCCCTTGTTTCTTCTCTGCCCCCACTGGTCAGAAGCCAAATGGGAGTGAAGCTTGGAGAAAAAAAAAGGCTGTGCGACTCTGGTCGAGTTATTAACGAAGTTGTGATTGGCTCAAGACAAGAGGCTGCTCAATGCATGCAGACAATTTTGAAGCGAAAGGTAATGGTTTCAAGTGCAAGACAGGCTGTCTCTGGTCTGCTGGCTGTTGGTGGTGTTAATGGCATGAGATATCTTGGTGCTAAAATGCGCAAGGCTTGGAATTCGTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mmp37

Protein Analysis

333

Amino Acids

37.43

Weight (kDa)

9.3

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tam41_Mmp37 PF09139 9 - 327 1.1e-103 Phosphatidate cytidylyltransferase, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 977
AclWI GGATC 4 cut(s) 140, 195, 510, 723
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 988
AfaI GTAC 1 cut(s) 591
AfiI CCNNNNNNNGG 2 cut(s) 156, 703
AgsI TTSAA 8 cut(s) 29, 274, 307, 398, 418, 638, 880, 900
AhdI GACNNNNNGTC 1 cut(s) 914
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AluBI AGCT 4 cut(s) 25, 461, 725, 781
AluI AGCT 4 cut(s) 25, 461, 725, 781
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 641, 922
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 4 cut(s) 140, 195, 510, 723
AoxI GGCC 2 cut(s) 222, 376
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 6 cut(s) 211, 452, 461, 464, 722, 854
ApoI RAATTY 1 cut(s) 988
AspLEI GCGC 1 cut(s) 978
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 551, 589
BaeGI GKGCMC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BccI CCATC 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 641, 922
BisI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
BlsI GCNGC 6 cut(s) 213, 454, 463, 466, 724, 856
BmeRI GACNNNNNGTC 1 cut(s) 914
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 391, 826
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 703
Bse118I RCCGGY 2 cut(s) 378, 391
Bse1I ACTGG 3 cut(s) 234, 692, 759
BseGI GGATG 2 cut(s) 210, 482
BseLI CCNNNNNNNGG 2 cut(s) 156, 703
BseMII CTCAG 4 cut(s) 156, 450, 486, 716
BseNI ACTGG 3 cut(s) 234, 692, 759
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 2 cut(s) 224, 378
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 2 cut(s) 379, 392
BslI CCNNNNNNNGG 2 cut(s) 156, 703
BsmAI GTCTC 2 cut(s) 641, 922
BsmI GAATGC 2 cut(s) 129, 160
BsnI GGCC 2 cut(s) 224, 378
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 4 cut(s) 145, 187, 502, 728
BspANI GGCC 2 cut(s) 224, 378
BspCNI CTCAG 4 cut(s) 157, 449, 487, 715
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 4 cut(s) 140, 195, 510, 723
BsrFI RCCGGY 2 cut(s) 378, 391
BsrI ACTGG 3 cut(s) 234, 692, 759
BssAI RCCGGY 2 cut(s) 378, 391
BssMI GATC 4 cut(s) 145, 187, 502, 728
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 326, 866, 930
BstDEI CTNAG 4 cut(s) 165, 436, 495, 702
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 2 cut(s) 210, 482
BstHHI GCGC 1 cut(s) 978
BstKTI GATC 4 cut(s) 148, 190, 505, 731
BstMAI GTCTC 2 cut(s) 641, 922
BstMBI GATC 4 cut(s) 145, 187, 502, 728
BstMWI GCNNNNNNNGC 3 cut(s) 458, 461, 911
BstNSI RCATGY 2 cut(s) 328, 868
BstPAI GACNNNNGTC 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 2 cut(s) 145, 502
BstYI RGATCY 2 cut(s) 145, 502
BsuRI GGCC 2 cut(s) 224, 378
BtsCI GGATG 2 cut(s) 210, 482
BtsIMutI CAGTG 2 cut(s) 492, 752
Cac8I GCNNGC 3 cut(s) 326, 866, 930
CfoI GCGC 1 cut(s) 978
Cfr10I RCCGGY 2 cut(s) 378, 391
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 590
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 3 cut(s) 325, 865, 952
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 4 cut(s) 165, 436, 495, 702
DpnI GATC 4 cut(s) 147, 189, 504, 730
DpnII GATC 4 cut(s) 145, 187, 502, 728
DriI GACNNNNNGTC 1 cut(s) 914
EaeI YGGCCR 1 cut(s) 376
Eam1105I GACNNNNNGTC 1 cut(s) 914
Eco32I GATATC 1 cut(s) 959
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 988
EcoRV GATATC 1 cut(s) 959
EcoT22I ATGCAT 1 cut(s) 866
FaeI CATG 3 cut(s) 328, 868, 955
FatI CATG 3 cut(s) 324, 864, 951
Fnu4HI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
FokI GGATG 2 cut(s) 217, 469
Fsp4HI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
FspI TGCGCA 1 cut(s) 977
GlaI GCGC 1 cut(s) 977
GluI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
GsaI CCCAGC 1 cut(s) 25
HaeIII GGCC 2 cut(s) 224, 378
HapII CCGG 2 cut(s) 379, 392
HhaI GCGC 1 cut(s) 978
Hin1II CATG 3 cut(s) 328, 868, 955
Hin6I GCGC 1 cut(s) 976
HinP1I GCGC 1 cut(s) 976
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 3 cut(s) 7, 169, 806
HpaII CCGG 2 cut(s) 379, 392
HphI GGTGA 2 cut(s) 551, 589
Hpy166II GTNNAC 5 cut(s) 114, 181, 268, 433, 492
Hpy188I TCNGA 5 cut(s) 145, 166, 174, 409, 761
Hpy188III TCNNGA 5 cut(s) 98, 638, 678, 704, 843
Hpy8I GTNNAC 5 cut(s) 114, 181, 268, 433, 492
HpyAV CCTTC 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 461, 911
HpyF3I CTNAG 4 cut(s) 165, 436, 495, 702
Hsp92II CATG 3 cut(s) 328, 868, 955
HspAI GCGC 1 cut(s) 976
Kzo9I GATC 4 cut(s) 145, 187, 502, 728
Lsp1109I GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
MaeIII GTNAC 4 cut(s) 98, 232, 381, 539
MalI GATC 4 cut(s) 147, 189, 504, 730
MboI GATC 4 cut(s) 145, 187, 502, 728
MboII GAAGA 4 cut(s) 38, 575, 592, 732
MflI RGATCY 2 cut(s) 145, 502
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 7 cut(s) 352, 402, 412, 442, 599, 873, 988
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 2 cut(s) 269, 403
Mph1103I ATGCAT 1 cut(s) 866
MseI TTAA 3 cut(s) 441, 822, 945
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 2 cut(s) 379, 392
Mva1269I GAATGC 2 cut(s) 129, 160
MwoI GCNNNNNNNGC 3 cut(s) 458, 461, 911
NdeII GATC 4 cut(s) 145, 187, 502, 728
NlaIII CATG 3 cut(s) 328, 868, 955
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 98, 539
NsbI TGCGCA 1 cut(s) 977
NsiI ATGCAT 1 cut(s) 866
NspI RCATGY 2 cut(s) 328, 868
PaeI GCATGC 2 cut(s) 328, 868
PctI GAATGC 2 cut(s) 129, 160
PfeI GAWTC 2 cut(s) 7, 169
PkrI GCNGC 6 cut(s) 213, 454, 463, 466, 724, 856
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
PshAI GACNNNNGTC 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 2 cut(s) 145, 502
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 3 cut(s) 441, 822, 945
SatI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
Sau3AI GATC 4 cut(s) 145, 187, 502, 728
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 800
SduI GDGCHC 1 cut(s) 270
SetI ASST 8 cut(s) 27, 259, 365, 463, 579, 727, 783, 891
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 370, 841
SmoI CTYRAG 2 cut(s) 370, 841
SphI GCATGC 2 cut(s) 328, 868
Sse9I AATT 7 cut(s) 352, 402, 412, 442, 599, 873, 988
TaqI TCGA 2 cut(s) 727, 814
TaqII GACCGA 1 cut(s) 603
TasI AATT 7 cut(s) 352, 402, 412, 442, 599, 873, 988
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 2 cut(s) 7, 169
Tru1I TTAA 3 cut(s) 441, 822, 945
Tru9I TTAA 3 cut(s) 441, 822, 945
TscAI CASTG 2 cut(s) 499, 759
TseFI GTSAC 2 cut(s) 98, 539
TseI GCWGC 6 cut(s) 211, 452, 461, 464, 722, 854
Tsp45I GTSAC 2 cut(s) 98, 539
TspRI CASTG 2 cut(s) 499, 759
VneI GTGCAC 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 988
XceI RCATGY 2 cut(s) 328, 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.