RchiOBHm_Chr5g0027451

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017007
Physical Location & Seq
Reverse (-)
21400695 .. 21401490
796 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
ATGCAATGGCTTCCTTTTTGTATACCATTTTGCCTCGACTTTCTGTGGCAGGAGGCGTTTTTACAGCATATCCAATCCCTTGACCGTAATGACTATAAAGTACTTTTGTTTGTGCCTGTAATCGATGAACCTGACAAAGTGGAGGTAAAGGTTTTGACTCTTGGCTCGTGGATTTGGAGAAGCATTGGGAATTTTGTGTACTCTCTTCGTTATCGATCACGTAATGGCGGGATTTATCTTAATGGTTTTCTTCACTGGATTGTTGGCTCTGTTGACGGCTCTCGTATAATTTGTGCTTTCAACGTTGAGAGGGAGTGTTTTCAAGAGTTACCCCTGCCACCTTCTCCTCGAAGCGTCACTGCTTTAAACCTCGGAATCTTGAAAGATTGGCTCTCTGTAACAGTTTGCTCTTATACCAAAATCATTGTTTGGGTGATGAAGGATTACGGCTGTAACGAGTCTTGGACCAAAGAGTTGGAAATAAGCGGCACCACTCCGTTTTTTAAACAAGTGATAGAACACACAGAAGACGGGAAAGCGTTATTGCTTGATAAAATGAGCCTTACACTGGAGGTGTATACTCCTGGAAGAAAGGGTCTTGATCAGATGCTCCGGCTAGACAGTCTCTCAATGGCTTCAATATTTCCTTACATTCCAAGCTTTGCCTCAATTAGAGATATCACCGGGTGTCCGAGCTCGAAATCATCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

237

Amino Acids

27.09

Weight (kDa)

5.95

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 30 - 158 1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 488
AccI GTMKAC 2 cut(s) 22, 578
AciI CCGC 2 cut(s) 228, 486
AclI AACGTT 1 cut(s) 303
AcsI RAATTY 1 cut(s) 190
AdeI CACNNNGTG 1 cut(s) 687
AfaI GTAC 2 cut(s) 102, 200
AfiI CCNNNNNNNGG 1 cut(s) 568
AgsI TTSAA 4 cut(s) 301, 323, 382, 639
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 2 cut(s) 660, 696
AluI AGCT 2 cut(s) 660, 696
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 1 cut(s) 629
ApoI RAATTY 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 685
AsuHPI GGTGA 2 cut(s) 445, 673
AvaII GGWCC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 698
BauI CACGAG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 698
BceAI ACGGC 2 cut(s) 292, 463
BciT130I CCWGG 1 cut(s) 585
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 629
BfaI CTAG 2 cut(s) 617, 708
BisI GCNGC 1 cut(s) 487
BlsI GCNGC 1 cut(s) 488
BmcAI AGTACT 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 585, 685
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 2 cut(s) 585, 685
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 685
Bsa29I ATCGAT 2 cut(s) 123, 214
BsaAI YACGTR 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 260, 573
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 585
BseCI ATCGAT 2 cut(s) 123, 214
BseDI CCNNGG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 260, 573
BseRI GAGGAG 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 2 cut(s) 123, 214
BsiHKAI GWGCWC 1 cut(s) 698
BsiSI CCGG 2 cut(s) 613, 684
BslI CCNNNNNNNGG 1 cut(s) 568
BsmAI GTCTC 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 2 cut(s) 215, 601
BspACI CCGC 2 cut(s) 228, 486
BspDI ATCGAT 2 cut(s) 123, 214
BspLI GGNNCC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 260, 573
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 215, 601
BssNAI GTATAC 2 cut(s) 23, 579
BssSI CACGAG 1 cut(s) 166
Bst1107I GTATAC 2 cut(s) 23, 579
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 86, 403, 623
Bst6I CTCTTC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 221
BstKTI GATC 2 cut(s) 218, 604
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 2 cut(s) 215, 601
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 2 cut(s) 583, 683
BstV2I GAAGAC 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 475
BstZ17I GTATAC 2 cut(s) 23, 579
Bsu15I ATCGAT 2 cut(s) 123, 214
BsuTUI ATCGAT 2 cut(s) 123, 214
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 3 cut(s) 253, 357, 566
Cfr13I GGNCC 1 cut(s) 465
ClaI ATCGAT 2 cut(s) 123, 214
CseI GACGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 101, 199
CviQI GTAC 2 cut(s) 101, 199
DpnI GATC 2 cut(s) 217, 603
DpnII GATC 2 cut(s) 215, 601
DraI TTTAAA 2 cut(s) 366, 505
DraIII CACNNNGTG 1 cut(s) 687
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 696
Eco24I GRGCYC 1 cut(s) 698
Eco32I GATATC 1 cut(s) 679
Eco47I GGWCC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 583
EcoRV GATATC 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 698
FaiI YATR 6 cut(s) 23, 69, 96, 287, 414, 579
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 2 cut(s) 22, 578
Fnu4HI GCNGC 1 cut(s) 487
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 1 cut(s) 487
FspBI CTAG 2 cut(s) 617, 708
GluI GCNGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 590
HapII CCGG 2 cut(s) 613, 684
HgaI GACGC 1 cut(s) 343
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 658
HinfI GANTC 3 cut(s) 157, 375, 458
HpaII CCGG 2 cut(s) 613, 684
HphI GGTGA 2 cut(s) 445, 673
Hpy166II GTNNAC 4 cut(s) 23, 199, 274, 579
Hpy188I TCNGA 3 cut(s) 374, 606, 693
Hpy188III TCNNGA 3 cut(s) 323, 379, 599
Hpy8I GTNNAC 4 cut(s) 23, 199, 274, 579
HpyAV CCTTC 2 cut(s) 351, 433
HpyCH4III ACNGT 3 cut(s) 86, 403, 623
HpyCH4IV ACGT 2 cut(s) 220, 303
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 2 cut(s) 220, 303
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 2 cut(s) 215, 601
LmnI GCTCC 1 cut(s) 615
LweI GCATC 1 cut(s) 597
MaeI CTAG 2 cut(s) 617, 708
MaeII ACGT 2 cut(s) 220, 303
MaeIII GTNAC 4 cut(s) 327, 355, 397, 452
MalI GATC 2 cut(s) 217, 603
MboI GATC 2 cut(s) 215, 601
MboII GAAGA 4 cut(s) 197, 242, 539, 600
MhlI GDGCHC 1 cut(s) 698
MluCI AATT 3 cut(s) 190, 288, 669
MlyI GAGTC 2 cut(s) 151, 467
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 8 cut(s) 44, 46, 136, 303, 357, 380, 565, 676
MseI TTAA 4 cut(s) 240, 365, 504, 712
MspI CCGG 2 cut(s) 613, 684
MspR9I CCNGG 2 cut(s) 585, 685
MvaI CCWGG 1 cut(s) 585
NciI CCSGG 1 cut(s) 685
NdeII GATC 2 cut(s) 215, 601
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PfeI GAWTC 1 cut(s) 375
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 1 cut(s) 488
PleI GAGTC 2 cut(s) 151, 466
PpsI GAGTC 2 cut(s) 151, 466
Ppu21I YACGTR 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 698
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 465
RsaI GTAC 2 cut(s) 102, 200
RsaNI GTAC 2 cut(s) 101, 199
SacI GAGCTC 1 cut(s) 698
SaqAI TTAA 4 cut(s) 240, 365, 504, 712
SatI GCNGC 1 cut(s) 487
Sau3AI GATC 2 cut(s) 215, 601
Sau96I GGNCC 1 cut(s) 465
ScaI AGTACT 1 cut(s) 102
SchI GAGTC 2 cut(s) 151, 467
ScrFI CCNGG 2 cut(s) 585, 685
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 1 cut(s) 597
SinI GGWCC 1 cut(s) 465
Sse9I AATT 3 cut(s) 190, 288, 669
SsiI CCGC 2 cut(s) 228, 486
SspI AATATT 1 cut(s) 642
SspMI CTAG 2 cut(s) 617, 708
SstI GAGCTC 1 cut(s) 698
StyD4I CCNGG 2 cut(s) 583, 683
TaaI ACNGT 3 cut(s) 86, 403, 623
TaiI ACGT 2 cut(s) 223, 306
TaqI TCGA 5 cut(s) 36, 123, 214, 349, 698
TasI AATT 3 cut(s) 190, 288, 669
TatI WGTACW 2 cut(s) 100, 198
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 4 cut(s) 240, 365, 504, 712
Tru9I TTAA 4 cut(s) 240, 365, 504, 712
TscAI CASTG 3 cut(s) 260, 364, 573
TseFI GTSAC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 141, 452
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 3 cut(s) 260, 364, 573
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 1 cut(s) 190
XmiI GTMKAC 2 cut(s) 22, 578
XspI CTAG 2 cut(s) 617, 708
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.