Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017007

Physical Location & Seq

Genomic Coordinates Reverse (-)

21444116 .. 21445330

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG211500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGACAACCAAAGTTTGCCAGAATAATGGCGGACTAGTACCAAACCAAGATGATAAAAAGTCCTACCTTCTTCAATTACCGGACCACATAATAGCGGAGATCTTGTGCAAACTTCCAACCAAAACGCTCGTTCAACGCCAGCTTGTGTGCAGGTCTTGGCGCTGTTACCCCCACTTGTCTAGAGACCTGTTTTCACGAACACCCACATGCCTTTTGCTCTACGACTGGAGCCCGCGCTGCAGATTGTTCACATTGGTAGACCTCAAGAACAACTTAATTCAAGATGCCGTAATGAAGTTTCGTAGTGATGGAAATCCCACATACAATCAGCGATATGTAACTGTTGTGGGTTCATGCAATGGCTTCCTTTTTCTATACAATTTTGCCTGGCGTTTATTTGATACGACGCCTTTTTACATATCCAATCCCTTGACCGGTGAGTCATTATCTTTTCCACCTACTGATACTGGTGAACAGGATGATATTAACGGTTTTGGTTTTGGATTTAGTCCTATCAGTGATGCCTATAAAGTACTTCTGTTTGTGCCTGCAATCGATGAACCTGACAAAGTGGAGGTAAAGGTTTTGACTCTTGGCTCGTGGATTTGGAGAAGCATTGGGAATTATGTGTTCTCATCTCTTCGTTATCAAACACGTTATCGCGGGATTTATCTCAATGGTTTTCTTCACTGGATTGGTGGCTCTATTGAGGGCTCTGGTATAATTGCCTTTGACGTTGAGAGGGAATGTTTTCAAGAGTTACCCCTGCCACCTTCTTGTTTAAGTTTAAATGTAAGCGTCACTTTAGACCTCGGAGTCTTGAAAGGTTGCCTGTCTGTAACAGTTCGCTCTGGTACCAAACTCAATATTTGGGCAATGAAGGATTATGGCTGTAATGAGTCTTGGACCAAAGACTTGGAAATAAGCGGCACTGATCTGTTTGATAAACAAGTGATGGAATACACAGAAGATGGGAAAGCGTTATTGTTAGATGGACGTAGACTTCAGGTGTATACTCCTGGAAGAGATCTTGAGATGCTCGTGGTAGATGGGAGACAGCATTCAATTATAACGTCAAAATTTCCTTACATTCCAAGCTTTGGCTCAATTAGAGATATCACCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

375

Amino Acids

42.54

Weight (kDa)

6.14

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 54	6.1e-06	F-box domain
FBA_1	PF07734	93 - 316	3e-18	F-box associated beta propeller domain
FBA_3	PF08268	108 - 305	4.3e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017007)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0027451
rosa_laevigata	RLG00000033021
rosa_multiflora	Rmu_sc0003500.1_g000048 Rmu_sc0007802.1_g000023 Rmu_sc0007802.1_g000024
rosa_roxburghii	Rroxscaffold_1G00052070 Rroxscaffold_1G00052080
rosa_samantha	Rh5AG193200 Rh5BG191000 Rh5BG191300 Rh5CG211400 Rh5CG211500 Rh5DG192700
rosa_wichuraiana	Rw5G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
AasI	GACNNNNNNGTC	2 cut(s)	439, 815
Acc36I	ACCTGC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	854
AccB1I	GGYRCC	1 cut(s)	854
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AccI	GTMKAC	3 cut(s)	258, 1000, 1013
AccII	CGCG	2 cut(s)	235, 663
AciI	CCGC	5 cut(s)	30, 95, 233, 663, 927
AcsI	RAATTY	1 cut(s)	1079
AcuI	CTGAAG	1 cut(s)	989
AcyI	GRCGYC	1 cut(s)	407
AfaI	GTAC	3 cut(s)	39, 534, 856
AfiI	CCNNNNNNNGG	2 cut(s)	434, 1100
AflIII	ACRYGT	1 cut(s)	653
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	6 cut(s)	74, 134, 281, 755, 823, 1065
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	386, 1018
AluBI	AGCT	2 cut(s)	142, 1098
AluI	AGCT	2 cut(s)	142, 1098
Alw26I	GTCTC	2 cut(s)	177, 1048
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	1079
AsiGI	ACCGGT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	750
Asp718I	GGTACC	1 cut(s)	854
AspLEI	GCGC	2 cut(s)	162, 237
AspS9I	GGNCC	2 cut(s)	82, 906
AsuC2I	CCSGG	1 cut(s)	1123
AsuHPI	GGTGA	3 cut(s)	449, 482, 1111
AvaII	GGWCC	2 cut(s)	82, 906
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	2 cut(s)	233, 716
BauI	CACGAG	2 cut(s)	598, 1040
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	5 cut(s)	302, 949, 965, 986, 1043
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	388, 1020
BcnI	CCSGG	1 cut(s)	1123
BcoDI	GTCTC	2 cut(s)	177, 1048
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 180
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	141
BglII	AGATCT	2 cut(s)	99, 1027
BisI	GCNGC	2 cut(s)	238, 928
BlsI	GCNGC	2 cut(s)	239, 929
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	3 cut(s)	388, 1020, 1123
Bme18I	GGWCC	2 cut(s)	82, 906
BmgT120I	GGNCC	2 cut(s)	82, 906
BmiI	GGNNCC	2 cut(s)	230, 856
BmrFI	CCNGG	3 cut(s)	388, 1020, 1123
BmsI	GCATC	3 cut(s)	274, 511, 1026
BpmI	CTGGAG	1 cut(s)	247
BpuEI	CTTGAG	2 cut(s)	248, 1052
BpuMI	CCSGG	1 cut(s)	1123
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	811
BsaWI	WCCGGW	2 cut(s)	79, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 1100
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	3 cut(s)	230, 472, 695
Bse3DI	GCAATG	2 cut(s)	364, 882
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	388, 1020
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	811
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	434, 1100
BseMI	GCAATG	2 cut(s)	364, 882
BseNI	ACTGG	3 cut(s)	230, 472, 695
BseXI	GCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	235, 663
BshNI	GGYRCC	1 cut(s)	854
BshTI	ACCGGT	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	555
BsiSI	CCGG	3 cut(s)	80, 435, 1122
BslI	CCNNNNNNNGG	2 cut(s)	434, 1100
BsmAI	GTCTC	2 cut(s)	177, 1048
BsmI	GAATGC	1 cut(s)	1060
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	233, 716
Bsp143I	GATC	3 cut(s)	99, 934, 1027
BspACI	CCGC	5 cut(s)	30, 95, 233, 663, 927
BspDI	ATCGAT	1 cut(s)	555
BspFNI	CGCG	2 cut(s)	235, 663
BspLI	GGNNCC	2 cut(s)	230, 856
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	364, 882
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	3 cut(s)	230, 472, 695
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	811
BssMI	GATC	3 cut(s)	99, 934, 1027
BssNAI	GTATAC	1 cut(s)	1014
BssNI	GRCGYC	1 cut(s)	407
BssSI	CACGAG	2 cut(s)	598, 1040
Bst1107I	GTATAC	1 cut(s)	1014
Bst2BI	CACGAG	2 cut(s)	598, 1040
Bst2UI	CCWGG	2 cut(s)	388, 1020
Bst4CI	ACNGT	3 cut(s)	343, 491, 844
Bst6I	CTCTTC	2 cut(s)	645, 1018
BstACI	GRCGYC	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	140, 233, 549
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	2 cut(s)	235, 663
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	162, 237
BstKTI	GATC	3 cut(s)	102, 937, 1030
BstMAI	GTCTC	2 cut(s)	177, 1048
BstMBI	GATC	3 cut(s)	99, 934, 1027
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	388, 1020
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	3 cut(s)	386, 1018, 1121
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	2 cut(s)	235, 663
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	99, 1027
BstXI	CCANNNNNNTGG	2 cut(s)	26, 916
BstYI	RGATCY	2 cut(s)	99, 1027
BstZ17I	GTATAC	1 cut(s)	1014
Bsu15I	ATCGAT	1 cut(s)	555
BsuTUI	ATCGAT	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	3 cut(s)	523, 688, 930
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	140, 233, 549
CfoI	GCGC	2 cut(s)	162, 237
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	82, 906
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	2 cut(s)	415, 787
Csp6I	GTAC	3 cut(s)	38, 533, 855
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	2 cut(s)	207, 354
CviJI	RGCY	9 cut(s)	142, 231, 363, 597, 702, 714, 891, 1098, 1104
CviKI_1	RGCY	9 cut(s)	142, 231, 363, 597, 702, 714, 891, 1098, 1104
CviQI	GTAC	3 cut(s)	38, 533, 855
DpnI	GATC	3 cut(s)	101, 936, 1029
DpnII	GATC	3 cut(s)	99, 934, 1027
DraI	TTTAAA	1 cut(s)	789
DrdI	GACNNNNNNGTC	2 cut(s)	439, 815
DseDI	GACNNNNNNGTC	2 cut(s)	439, 815
Eam1104I	CTCTTC	2 cut(s)	645, 1018
EarI	CTCTTC	2 cut(s)	645, 1018
EciI	GGCGGA	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	233, 716
Eco31I	GGTCTC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	2 cut(s)	82, 906
Eco57I	CTGAAG	1 cut(s)	989
EcoRII	CCWGG	2 cut(s)	386, 1018
EcoRV	GATATC	1 cut(s)	1117
EcoT38I	GRGCYC	2 cut(s)	233, 716
FaeI	CATG	2 cut(s)	210, 357
FalI	AAGNNNNNCTT	4 cut(s)	257, 289, 787, 819
FatI	CATG	2 cut(s)	206, 353
FauI	CCCGC	2 cut(s)	240, 656
FblI	GTMKAC	3 cut(s)	258, 1000, 1013
Fnu4HI	GCNGC	2 cut(s)	238, 928
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	2 cut(s)	233, 716
Fsp4HI	GCNGC	2 cut(s)	238, 928
FspBI	CTAG	2 cut(s)	35, 180
GlaI	GCGC	2 cut(s)	161, 236
GluI	GCNGC	2 cut(s)	238, 928
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	163
HapII	CCGG	3 cut(s)	80, 435, 1122
HgaI	GACGC	2 cut(s)	415, 787
HhaI	GCGC	2 cut(s)	162, 237
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	210, 357
Hin6I	GCGC	2 cut(s)	160, 235
HinP1I	GCGC	2 cut(s)	160, 235
HindIII	AAGCTT	1 cut(s)	1096
HinfI	GANTC	4 cut(s)	440, 589, 816, 899
HpaII	CCGG	3 cut(s)	80, 435, 1122
HphI	GGTGA	3 cut(s)	449, 482, 1111
Hpy166II	GTNNAC	5 cut(s)	249, 259, 473, 1001, 1014
Hpy188I	TCNGA	1 cut(s)	815
Hpy188III	TCNNGA	7 cut(s)	180, 195, 265, 281, 755, 820, 1031
Hpy8I	GTNNAC	5 cut(s)	249, 259, 473, 1001, 1014
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	3 cut(s)	77, 783, 874
HpyCH4III	ACNGT	3 cut(s)	343, 491, 844
HpyCH4IV	ACGT	4 cut(s)	655, 735, 997, 1073
HpyCH4V	TGCA	5 cut(s)	108, 150, 240, 357, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpySE526I	ACGT	4 cut(s)	655, 735, 997, 1073
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	210, 357
HspAI	GCGC	2 cut(s)	160, 235
KpnI	GGTACC	1 cut(s)	858
Kzo9I	GATC	3 cut(s)	99, 934, 1027
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	3 cut(s)	274, 511, 1026
MaeI	CTAG	2 cut(s)	35, 180
MaeII	ACGT	4 cut(s)	655, 735, 997, 1073
MaeIII	GTNAC	5 cut(s)	164, 337, 759, 799, 838
MalI	GATC	3 cut(s)	101, 936, 1029
MboI	GATC	3 cut(s)	99, 934, 1027
MboII	GAAGA	5 cut(s)	62, 632, 677, 980, 1035
MflI	RGATCY	2 cut(s)	99, 1027
MhlI	GDGCHC	2 cut(s)	233, 716
MluCI	AATT	8 cut(s)	74, 276, 379, 622, 723, 1065, 1079, 1107
MlyI	GAGTC	4 cut(s)	449, 583, 825, 908
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	5 cut(s)	272, 568, 703, 735, 821
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	4 cut(s)	275, 486, 782, 788
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	3 cut(s)	80, 435, 1122
MspR9I	CCNGG	3 cut(s)	388, 1020, 1123
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	2 cut(s)	388, 1020
MvnI	CGCG	2 cut(s)	235, 663
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	1123
NdeII	GATC	3 cut(s)	99, 934, 1027
NlaIII	CATG	2 cut(s)	210, 357
NlaIV	GGNNCC	2 cut(s)	230, 856
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	1 cut(s)	210
PctI	GAATGC	1 cut(s)	1060
PdmI	GAANNNNTTC	1 cut(s)	750
PflMI	CCANNNNNTGG	1 cut(s)	1100
PfoI	TCCNGGA	1 cut(s)	1018
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	239, 929
PleI	GAGTC	4 cut(s)	448, 583, 824, 907
PpsI	GAGTC	4 cut(s)	448, 583, 824, 907
PsiI	TTATAA	1 cut(s)	1070
Psp6I	CCWGG	2 cut(s)	386, 1018
PspGI	CCWGG	2 cut(s)	386, 1018
PspN4I	GGNNCC	2 cut(s)	230, 856
PspPI	GGNCC	2 cut(s)	82, 906
PstI	CTGCAG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	99, 1027
RsaI	GTAC	3 cut(s)	39, 534, 856
RsaNI	GTAC	3 cut(s)	38, 533, 855
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	275, 486, 782, 788
SatI	GCNGC	2 cut(s)	238, 928
Sau3AI	GATC	3 cut(s)	99, 934, 1027
Sau96I	GGNCC	2 cut(s)	82, 906
ScaI	AGTACT	1 cut(s)	534
SchI	GAGTC	4 cut(s)	449, 583, 825, 908
ScrFI	CCNGG	3 cut(s)	388, 1020, 1123
SduI	GDGCHC	2 cut(s)	233, 716
SfaNI	GCATC	3 cut(s)	274, 511, 1026
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	2 cut(s)	82, 906
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	263, 1031
SmoI	CTYRAG	2 cut(s)	263, 1031
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	8 cut(s)	74, 276, 379, 622, 723, 1065, 1079, 1107
SsiI	CCGC	5 cut(s)	30, 95, 233, 663, 927
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	2 cut(s)	35, 180
StyD4I	CCNGG	3 cut(s)	386, 1018, 1121
TaaI	ACNGT	3 cut(s)	343, 491, 844
TaiI	ACGT	4 cut(s)	658, 738, 1000, 1076
TaqI	TCGA	1 cut(s)	555
TasI	AATT	8 cut(s)	74, 276, 379, 622, 723, 1065, 1079, 1107
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	1 cut(s)	930
Tru1I	TTAA	4 cut(s)	275, 486, 782, 788
Tru9I	TTAA	4 cut(s)	275, 486, 782, 788
TscAI	CASTG	3 cut(s)	523, 695, 937
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	4 cut(s)	308, 342, 573, 893
TspRI	CASTG	3 cut(s)	523, 695, 937
Van91I	CCANNNNNTGG	1 cut(s)	1100
VpaK11BI	GGWCC	2 cut(s)	82, 906
XapI	RAATTY	1 cut(s)	1079
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	210
XmiI	GTMKAC	3 cut(s)	258, 1000, 1013
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	35, 180
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.