Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003500.1

Orthogroup ID

OG0017007

Physical Location & Seq

Genomic Coordinates Reverse (-)

181767 .. 182906

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003500.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgacaaccaaagtttgccagaataatggtggactagtaccaaaccaagaagataagaaaccctaccttcttcaattaccggaccacataatagcagagatcttgtgcaaacttccaaccaaaacgctcgtccaatgccagcttgtgtgcaagtcttggccctgttaccgccagttatctagagacctattttcacgaacacccacatgccttttggtccacgaccggagcccgtgctgcaaattgttgacattggtagacctcaaaagcaactttattcaagaagatgccgtaatgaggtttcgtagtgatggaaatcccatgtacaatcagtcacatggaattattgtgggttcatgcaatggcttcctttttgcctcgactttctggggtaggaggcgtttttacagcatatccaatcccttgaccggtgagtttttatcttttccactcactgatactggtgaacagaatgatattaaagattttggttttggatttagtcctatcagtaatgcctataaagtacttctgtttgtgcctgtaatcgatgaacctgacaaagtggaggtaaaggttttgactcttggctcgtggatttggagaagcattgggaattttgtgtactctcttcgttatcgatcacgtaatggcgggatttatcttaatggttttcttcactggattgttggctctgttgacggctctcctataatttgtgctttcgacgttgagagggagtgttttcaagagttacacctgccaccttctcctggaagcgtcactgctttaaacctcggaatcttgaaagattggttctctgtaacagtttgctcttataccaaaatcattgtttgggtgatgaaggattacggctgtaacgagtcttggaccaaagagttggaaataagcggcatcactccgttttttaaacaagtgatagaacacacagaagacgggaaagcgttattgcttgataaaatgagctttacactggaggtgtatactcctggaagaaagggtcttgatcagatgctccagctagacagtctctcaatggattcaatatttccttacattccaagctttgcctcaattagagatatcaccgggtgtccgagctcgaaatcatctagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

379

Amino Acids

42.79

Weight (kDa)

6.59

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017007)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0027451
rosa_laevigata	RLG00000033021
rosa_multiflora	Rmu_sc0003500.1_g000048 Rmu_sc0007802.1_g000023 Rmu_sc0007802.1_g000024
rosa_roxburghii	Rroxscaffold_1G00052070 Rroxscaffold_1G00052080
rosa_samantha	Rh5AG193200 Rh5BG191000 Rh5BG191300 Rh5CG211400 Rh5CG211500 Rh5DG192700
rosa_wichuraiana	Rw5G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	768
Acc36I	ACCTGC	1 cut(s)	768
AccI	GTMKAC	2 cut(s)	258, 1004
AciI	CCGC	3 cut(s)	169, 654, 912
AcsI	RAATTY	1 cut(s)	616
AdeI	CACNNNGTG	1 cut(s)	1113
AfaI	GTAC	4 cut(s)	39, 326, 528, 626
AfiI	CCNNNNNNNGG	3 cut(s)	297, 428, 773
AgeI	ACCGGT	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	74, 281, 749, 808, 1065
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	772, 1009
AluBI	AGCT	5 cut(s)	142, 987, 1042, 1086, 1122
AluI	AGCT	5 cut(s)	142, 987, 1042, 1086, 1122
Alw21I	GWGCWC	1 cut(s)	1124
Alw26I	GTCTC	2 cut(s)	177, 1055
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	616
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AsiGI	ACCGGT	1 cut(s)	428
AspS9I	GGNCC	4 cut(s)	82, 159, 217, 891
AsuC2I	CCSGG	1 cut(s)	1111
AsuHPI	GGTGA	4 cut(s)	443, 476, 871, 1099
AvaII	GGWCC	3 cut(s)	82, 217, 891
BanII	GRGCYC	2 cut(s)	233, 1124
BauI	CACGAG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	1124
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	3 cut(s)	275, 718, 889
BciT130I	CCWGG	2 cut(s)	774, 1011
BclI	TGATCA	1 cut(s)	1027
BcnI	CCSGG	1 cut(s)	1111
BcoDI	GTCTC	2 cut(s)	177, 1055
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	4 cut(s)	35, 180, 1043, 1134
BfuAI	ACCTGC	1 cut(s)	768
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	2 cut(s)	238, 913
BlsI	GCNGC	2 cut(s)	239, 914
BmcAI	AGTACT	1 cut(s)	528
Bme1390I	CCNGG	3 cut(s)	774, 1011, 1111
Bme18I	GGWCC	3 cut(s)	82, 217, 891
BmgT120I	GGNCC	4 cut(s)	82, 159, 217, 891
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	3 cut(s)	774, 1011, 1111
BmsI	GCATC	3 cut(s)	277, 924, 1023
BpiI	GAAGAC	1 cut(s)	960
BpmI	CTGGAG	2 cut(s)	1016, 1022
BpuMI	CCSGG	1 cut(s)	1111
Bsa29I	ATCGAT	2 cut(s)	549, 640
BsaAI	YACGTR	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	796
BsaWI	WCCGGW	3 cut(s)	79, 225, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 428, 773
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	4 cut(s)	172, 466, 686, 999
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	774, 1011
BseCI	ATCGAT	2 cut(s)	549, 640
BseDI	CCNNGG	1 cut(s)	796
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	297, 428, 773
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	4 cut(s)	172, 466, 686, 999
BseXI	GCAGC	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	160
BshTI	ACCGGT	1 cut(s)	428
BshVI	ATCGAT	2 cut(s)	549, 640
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	1124
BsiSI	CCGG	4 cut(s)	80, 226, 429, 1110
BslI	CCNNNNNNNGG	3 cut(s)	297, 428, 773
BsmAI	GTCTC	2 cut(s)	177, 1055
BsnI	GGCC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	233, 1124
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	99, 641, 1027
BspACI	CCGC	3 cut(s)	169, 654, 912
BspANI	GGCC	1 cut(s)	160
BspDI	ATCGAT	2 cut(s)	549, 640
BspLI	GGNNCC	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	4 cut(s)	172, 466, 686, 999
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	796
BssMI	GATC	3 cut(s)	99, 641, 1027
BssNAI	GTATAC	1 cut(s)	1005
BssSI	CACGAG	1 cut(s)	592
Bst1107I	GTATAC	1 cut(s)	1005
Bst2BI	CACGAG	1 cut(s)	592
Bst2UI	CCWGG	2 cut(s)	774, 1011
Bst4CI	ACNGT	2 cut(s)	829, 1049
Bst6I	CTCTTC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	102, 644, 1030
BstMAI	GTCTC	2 cut(s)	177, 1055
BstMBI	GATC	3 cut(s)	99, 641, 1027
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	774, 1011
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	3 cut(s)	772, 1009, 1109
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	960
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	2 cut(s)	26, 901
BstYI	RGATCY	1 cut(s)	99
BstZ17I	GTATAC	1 cut(s)	1005
Bsu15I	ATCGAT	2 cut(s)	549, 640
BsuRI	GGCC	1 cut(s)	160
BsuTUI	ATCGAT	2 cut(s)	549, 640
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	4 cut(s)	453, 679, 783, 992
BveI	ACCTGC	1 cut(s)	768
Cac8I	GCNNGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	4 cut(s)	82, 159, 217, 891
ClaI	ATCGAT	2 cut(s)	549, 640
CseI	GACGC	1 cut(s)	769
Csp6I	GTAC	4 cut(s)	38, 325, 527, 625
CspAI	ACCGGT	1 cut(s)	428
CviAII	CATG	4 cut(s)	207, 322, 338, 357
CviQI	GTAC	4 cut(s)	38, 325, 527, 625
DpnI	GATC	3 cut(s)	101, 643, 1029
DpnII	GATC	3 cut(s)	99, 641, 1027
DraI	TTTAAA	2 cut(s)	792, 931
DraIII	CACNNNGTG	1 cut(s)	1113
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	1122
Eco24I	GRGCYC	2 cut(s)	233, 1124
Eco31I	GGTCTC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	1105
Eco47I	GGWCC	3 cut(s)	82, 217, 891
Eco53kI	GAGCTC	1 cut(s)	1122
EcoICRI	GAGCTC	1 cut(s)	1122
EcoRII	CCWGG	2 cut(s)	772, 1009
EcoRV	GATATC	1 cut(s)	1105
EcoT38I	GRGCYC	2 cut(s)	233, 1124
FaeI	CATG	4 cut(s)	210, 325, 341, 360
FatI	CATG	4 cut(s)	206, 321, 337, 356
FauI	CCCGC	1 cut(s)	647
FbaI	TGATCA	1 cut(s)	1027
FblI	GTMKAC	2 cut(s)	258, 1004
Fnu4HI	GCNGC	2 cut(s)	238, 913
FriOI	GRGCYC	2 cut(s)	233, 1124
Fsp4HI	GCNGC	2 cut(s)	238, 913
FspBI	CTAG	4 cut(s)	35, 180, 1043, 1134
GluI	GCNGC	2 cut(s)	238, 913
GsuI	CTGGAG	2 cut(s)	1016, 1022
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	4 cut(s)	80, 226, 429, 1110
HgaI	GACGC	1 cut(s)	769
Hin1II	CATG	4 cut(s)	210, 325, 341, 360
HincII	GTYRAC	2 cut(s)	249, 700
HindII	GTYRAC	2 cut(s)	249, 700
HindIII	AAGCTT	1 cut(s)	1084
HinfI	GANTC	4 cut(s)	583, 801, 884, 1061
HpaII	CCGG	4 cut(s)	80, 226, 429, 1110
HphI	GGTGA	4 cut(s)	443, 476, 871, 1099
Hpy166II	GTNNAC	8 cut(s)	32, 220, 249, 259, 467, 625, 700, 1005
Hpy188I	TCNGA	3 cut(s)	800, 1032, 1119
Hpy188III	TCNNGA	6 cut(s)	180, 195, 281, 749, 805, 1025
Hpy8I	GTNNAC	8 cut(s)	32, 220, 249, 259, 467, 625, 700, 1005
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	3 cut(s)	77, 777, 859
HpyCH4III	ACNGT	2 cut(s)	829, 1049
HpyCH4IV	ACGT	2 cut(s)	646, 729
HpyCH4V	TGCA	4 cut(s)	108, 150, 240, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpySE526I	ACGT	2 cut(s)	646, 729
Hsp92II	CATG	4 cut(s)	210, 325, 341, 360
Ksp22I	TGATCA	1 cut(s)	1027
Kzo9I	GATC	3 cut(s)	99, 641, 1027
LmnI	GCTCC	2 cut(s)	228, 1041
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	3 cut(s)	277, 924, 1023
MaeI	CTAG	4 cut(s)	35, 180, 1043, 1134
MaeII	ACGT	2 cut(s)	646, 729
MaeIII	GTNAC	6 cut(s)	164, 333, 753, 781, 823, 878
MalI	GATC	3 cut(s)	101, 643, 1029
MboI	GATC	3 cut(s)	99, 641, 1027
MboII	GAAGA	7 cut(s)	62, 62, 296, 623, 668, 965, 1026
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	233, 1124
MluCI	AATT	6 cut(s)	74, 242, 342, 616, 714, 1095
MlyI	GAGTC	2 cut(s)	577, 893
MmeI	TCCRAC	2 cut(s)	140, 882
MnlI	CCTC	9 cut(s)	272, 291, 388, 390, 562, 729, 806, 991, 1102
MseI	TTAA	5 cut(s)	480, 666, 791, 930, 1138
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	4 cut(s)	80, 226, 429, 1110
MspR9I	CCNGG	3 cut(s)	774, 1011, 1111
MvaI	CCWGG	2 cut(s)	774, 1011
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	1111
NdeII	GATC	3 cut(s)	99, 641, 1027
NlaIII	CATG	4 cut(s)	210, 325, 341, 360
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	2 cut(s)	333, 781
NspI	RCATGY	1 cut(s)	210
PaqCI	CACCTGC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	801, 1061
PfoI	TCCNGGA	2 cut(s)	772, 1009
PinAI	ACCGGT	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	239, 914
PleI	GAGTC	2 cut(s)	577, 892
PpsI	GAGTC	2 cut(s)	577, 892
Ppu21I	YACGTR	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	1124
Psp6I	CCWGG	2 cut(s)	772, 1009
PspGI	CCWGG	2 cut(s)	772, 1009
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	4 cut(s)	82, 159, 217, 891
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	4 cut(s)	39, 326, 528, 626
RsaNI	GTAC	4 cut(s)	38, 325, 527, 625
RseI	CAYNNNNRTG	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	1124
SaqAI	TTAA	5 cut(s)	480, 666, 791, 930, 1138
SatI	GCNGC	2 cut(s)	238, 913
Sau3AI	GATC	3 cut(s)	99, 641, 1027
Sau96I	GGNCC	4 cut(s)	82, 159, 217, 891
ScaI	AGTACT	1 cut(s)	528
SchI	GAGTC	2 cut(s)	577, 893
ScrFI	CCNGG	3 cut(s)	774, 1011, 1111
SduI	GDGCHC	2 cut(s)	233, 1124
SfaNI	GCATC	3 cut(s)	277, 924, 1023
SinI	GGWCC	3 cut(s)	82, 217, 891
SmiMI	CAYNNNNRTG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	6 cut(s)	74, 242, 342, 616, 714, 1095
SsiI	CCGC	3 cut(s)	169, 654, 912
SspI	AATATT	1 cut(s)	1068
SspMI	CTAG	4 cut(s)	35, 180, 1043, 1134
SstI	GAGCTC	1 cut(s)	1124
StyD4I	CCNGG	3 cut(s)	772, 1009, 1109
TaaI	ACNGT	2 cut(s)	829, 1049
TaiI	ACGT	2 cut(s)	649, 732
TaqI	TCGA	5 cut(s)	380, 549, 640, 726, 1124
TasI	AATT	6 cut(s)	74, 242, 342, 616, 714, 1095
TatI	WGTACW	3 cut(s)	324, 526, 624
TauI	GCSGC	1 cut(s)	915
TfiI	GAWTC	2 cut(s)	801, 1061
Tru1I	TTAA	5 cut(s)	480, 666, 791, 930, 1138
Tru9I	TTAA	5 cut(s)	480, 666, 791, 930, 1138
TscAI	CASTG	4 cut(s)	460, 686, 790, 999
TseFI	GTSAC	2 cut(s)	333, 781
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	2 cut(s)	333, 781
TspDTI	ATGAA	3 cut(s)	345, 567, 878
TspGWI	ACGGA	1 cut(s)	912
TspRI	CASTG	4 cut(s)	460, 686, 790, 999
VpaK11BI	GGWCC	3 cut(s)	82, 217, 891
XapI	RAATTY	1 cut(s)	616
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 211
XmiI	GTMKAC	2 cut(s)	258, 1004
XspI	CTAG	4 cut(s)	35, 180, 1043, 1134
ZrmI	AGTACT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.