Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017007

Physical Location & Seq

Genomic Coordinates Reverse (-)

22407496 .. 22410067

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGTTTCGTAGTGATGGAAATCCCACATACAATCAGCTATATGTAACTGTTGTGGGTTCATGCAATGGCTTCCTTTTTCTATACAATTTTGCCTGGCGTTTATTTGATACGACGCCTTTTTACATATCCAATCCCTTGACCGGTGAGTCATTATCTTTTCCACCTACTGATACTGGTGAACAGGATGATATTAACGGTTTTGGTTTTGGATTTAGTCCTATCAGTGATACCTATAAAGTACTTCTGTTTGTACCTGCAATCGATGAACCTGACAAAGTGGAGGTAAAGGTTTTGACTCTTGGCTCGTGGATTTGGAGAAGCATTGGGAATTATGTGTTCCCATCTCTTCGTTATCAATCACGTTATCGCGGGATTTATCTCAATGGTTTTCTTCACTGGATTGGTGGCTCTATTGAGGGCTCTGGTATAATTGCCTTTGACGTTGAGAGGGAATGTTTTCAAGAGTTACCCCTGCCACCTTCTTGTTTAAGTTTAAATGATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

169

Amino Acids

19.13

Weight (kDa)

4.55

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	11 - 163	8.8e-15	F-box associated beta propeller domain
FBA_3	PF08268	14 - 162	3.6e-17	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017007)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0027451
rosa_laevigata	RLG00000033021
rosa_multiflora	Rmu_sc0003500.1_g000048 Rmu_sc0007802.1_g000023 Rmu_sc0007802.1_g000024
rosa_roxburghii	Rroxscaffold_1G00052070 Rroxscaffold_1G00052080
rosa_samantha	Rh5AG193200 Rh5BG191000 Rh5BG191300 Rh5CG211400 Rh5CG211500 Rh5DG192700
rosa_wichuraiana	Rw5G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	265
AccII	CGCG	1 cut(s)	372
AciI	CCGC	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	2 cut(s)	243, 255
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
AsiGI	ACCGGT	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	158, 191
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	307
BccI	CCATC	2 cut(s)	11, 352
BciT130I	CCWGG	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
Bsa29I	ATCGAT	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	181, 404
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	97
BseCI	ATCGAT	1 cut(s)	264
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	181, 404
Bsh1236I	CGCG	1 cut(s)	372
BshTI	ACCGGT	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	425
BspACI	CCGC	1 cut(s)	372
BspDI	ATCGAT	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	181, 404
BssAI	RCCGGY	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	307
Bst2BI	CACGAG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	52, 200
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	372
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	372
Bsu15I	ATCGAT	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	232, 397
BveI	ACCTGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	242, 254
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	5 cut(s)	40, 72, 306, 411, 423
CviKI_1	RGCY	5 cut(s)	40, 72, 306, 411, 423
CviQI	GTAC	2 cut(s)	242, 254
DraI	TTTAAA	1 cut(s)	498
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	425
FaeI	CATG	1 cut(s)	66
FaiI	YATR	9 cut(s)	31, 43, 45, 64, 85, 128, 237, 336, 431
FatI	CATG	1 cut(s)	62
FauI	CCCGC	1 cut(s)	365
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	425
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	66
HinfI	GANTC	2 cut(s)	149, 298
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	158, 191
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	2 cut(s)	52, 200
HpyCH4IV	ACGT	2 cut(s)	364, 444
HpyCH4V	TGCA	2 cut(s)	66, 260
HpySE526I	ACGT	2 cut(s)	364, 444
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	364, 444
MaeIII	GTNAC	2 cut(s)	46, 468
MboII	GAAGA	2 cut(s)	341, 386
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	3 cut(s)	88, 331, 432
MlyI	GAGTC	2 cut(s)	158, 292
MnlI	CCTC	3 cut(s)	277, 412, 444
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	3 cut(s)	195, 491, 497
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	372
NlaIII	CATG	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	143
PleI	GAGTC	2 cut(s)	157, 292
PpsI	GAGTC	2 cut(s)	157, 292
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	243, 255
RsaNI	GTAC	2 cut(s)	242, 254
SaqAI	TTAA	3 cut(s)	195, 491, 497
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	2 cut(s)	158, 292
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	425
Sse9I	AATT	3 cut(s)	88, 331, 432
SsiI	CCGC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	52, 200
TaiI	ACGT	2 cut(s)	367, 447
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	88, 331, 432
TatI	WGTACW	1 cut(s)	241
Tru1I	TTAA	3 cut(s)	195, 491, 497
Tru9I	TTAA	3 cut(s)	195, 491, 497
TscAI	CASTG	2 cut(s)	232, 404
TspDTI	ATGAA	3 cut(s)	17, 51, 282
TspRI	CASTG	2 cut(s)	232, 404
XmnI	GAANNNNTTC	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.