Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017007

Physical Location & Seq

Genomic Coordinates Reverse (-)

22475268 .. 22476086

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTACAATCAGTCACATGGAATTATTGTGGGTTCATGCAATGGCTTCCTTTTTGCCTCGACTTTATGTGGTAGGAGGCGTTTTTACAGCATATCCAATCCCTTGACCGGTGAGTTTTTATCTTTTCCACTCACTGATACTGGTGAACAGAATGATATTAAAGATTTTGGTTTTGGATTTAGTCCTATCAGTAATGCCTATAAAGTACTTCTGTTTGTGCCTGTAATCGATGAACCTGACAAAGTGGAGGTAAAGGTTTTGACTCTTGGCTCGTGGATTTGGAGAAGCATTGGGAATTTTGTGTACTCTCTTCGTTATCGATCACGTAATGGCGGGATTTATCTTAATGGTTTTCTTCACTGGATTGTTGGCTCTGCTGACGGCTCTCGTATAATTTGTGCTTTCGACGTTGAGAGGGAGTGTTTTCAAGAGTTACCCCTGCCACCTTCTCCTGGAAGCGTCACTGCTTTAAACCTCGGAGTCTTGAAAGATTGGTTCTCTGTAACAGTTTGCTCTTATACCAAACTCATTGTTTGGGTGATGAAGGATTACGGCTGTAACGAGTCTTGGACCAAACAGTTGGAAATAAGCGGCATCACTCCGTTTTTTAAACAAGTGATAGAACACACAGAAGACGGGAAAGCGTTATTGCTTGATAAAATGAGCTTTACACTGGAGGTGTATACTCCTGGAAGAAAGGGTCTTGATCAGATGCTCCAGCTAGACAGTCTCTCAATGGATTCAATATTTCCTTACATTCCAAGCTTTGCCTCAATTAGAGATATCACCGGGTGTCCGAGCTCGAAATCATCTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

272

Amino Acids

30.44

Weight (kDa)

5.67

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	9 - 193	1.2e-19	F-box associated beta propeller domain
FBA_1	PF07734	10 - 259	2.2e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017007)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0027451
rosa_laevigata	RLG00000033021
rosa_multiflora	Rmu_sc0003500.1_g000048 Rmu_sc0007802.1_g000023 Rmu_sc0007802.1_g000024
rosa_roxburghii	Rroxscaffold_1G00052070 Rroxscaffold_1G00052080
rosa_samantha	Rh5AG193200 Rh5BG191000 Rh5BG191300 Rh5CG211400 Rh5CG211500 Rh5DG192700
rosa_wichuraiana	Rw5G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	683
AciI	CCGC	2 cut(s)	333, 591
AcsI	RAATTY	1 cut(s)	295
AdeI	CACNNNGTG	1 cut(s)	792
AfaI	GTAC	3 cut(s)	5, 207, 305
AfiI	CCNNNNNNNGG	2 cut(s)	107, 452
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	428, 487, 744
AjnI	CCWGG	2 cut(s)	451, 688
AluBI	AGCT	4 cut(s)	666, 721, 765, 801
AluI	AGCT	4 cut(s)	666, 721, 765, 801
Alw21I	GWGCWC	1 cut(s)	803
Alw26I	GTCTC	1 cut(s)	734
ApoI	RAATTY	1 cut(s)	295
AsiGI	ACCGGT	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	570
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	4 cut(s)	122, 155, 550, 778
AvaII	GGWCC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	803
BauI	CACGAG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	803
BceAI	ACGGC	2 cut(s)	397, 568
BciT130I	CCWGG	2 cut(s)	453, 690
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	2 cut(s)	722, 813
BisI	GCNGC	1 cut(s)	592
BlsI	GCNGC	1 cut(s)	593
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	3 cut(s)	453, 690, 790
Bme18I	GGWCC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	570
BmrFI	CCNGG	3 cut(s)	453, 690, 790
BmsI	GCATC	2 cut(s)	603, 702
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	2 cut(s)	695, 701
BpuMI	CCSGG	1 cut(s)	790
Bsa29I	ATCGAT	2 cut(s)	228, 319
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 452
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	3 cut(s)	145, 365, 678
Bse3DI	GCAATG	1 cut(s)	46
BseBI	CCWGG	2 cut(s)	453, 690
BseCI	ATCGAT	2 cut(s)	228, 319
BseDI	CCNNGG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	107, 452
BseMI	GCAATG	1 cut(s)	46
BseNI	ACTGG	3 cut(s)	145, 365, 678
BshTI	ACCGGT	1 cut(s)	107
BshVI	ATCGAT	2 cut(s)	228, 319
BsiHKAI	GWGCWC	1 cut(s)	803
BsiSI	CCGG	2 cut(s)	108, 789
BslI	CCNNNNNNNGG	2 cut(s)	107, 452
BsmAI	GTCTC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	803
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	320, 706
BspACI	CCGC	2 cut(s)	333, 591
BspDI	ATCGAT	2 cut(s)	228, 319
BsrDI	GCAATG	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	145, 365, 678
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	2 cut(s)	320, 706
BssNAI	GTATAC	1 cut(s)	684
BssSI	CACGAG	1 cut(s)	271
Bst1107I	GTATAC	1 cut(s)	684
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	453, 690
Bst4CI	ACNGT	3 cut(s)	508, 579, 728
Bst6I	CTCTTC	1 cut(s)	315
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	326
BstKTI	GATC	2 cut(s)	323, 709
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	2 cut(s)	320, 706
BstNI	CCWGG	2 cut(s)	453, 690
BstSCI	CCNGG	3 cut(s)	451, 688, 788
BstV2I	GAAGAC	1 cut(s)	639
BstXI	CCANNNNNNTGG	1 cut(s)	580
BstZ17I	GTATAC	1 cut(s)	684
Bsu15I	ATCGAT	2 cut(s)	228, 319
BsuTUI	ATCGAT	2 cut(s)	228, 319
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	4 cut(s)	132, 358, 462, 671
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	570
ClaI	ATCGAT	2 cut(s)	228, 319
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	3 cut(s)	4, 206, 304
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	2 cut(s)	17, 36
CviJI	RGCY	9 cut(s)	45, 270, 372, 384, 555, 666, 721, 765, 801
CviKI_1	RGCY	9 cut(s)	45, 270, 372, 384, 555, 666, 721, 765, 801
CviQI	GTAC	3 cut(s)	4, 206, 304
DpnI	GATC	2 cut(s)	322, 708
DpnII	GATC	2 cut(s)	320, 706
DraI	TTTAAA	2 cut(s)	471, 610
DraIII	CACNNNGTG	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	803
Eco32I	GATATC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	570
Eco53kI	GAGCTC	1 cut(s)	801
EcoICRI	GAGCTC	1 cut(s)	801
EcoRII	CCWGG	2 cut(s)	451, 688
EcoRV	GATATC	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	803
FaeI	CATG	2 cut(s)	20, 39
FaiI	YATR	8 cut(s)	18, 37, 67, 92, 201, 392, 519, 684
FatI	CATG	2 cut(s)	16, 35
FauI	CCCGC	1 cut(s)	326
FbaI	TGATCA	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	1 cut(s)	592
FriOI	GRGCYC	1 cut(s)	803
Fsp4HI	GCNGC	1 cut(s)	592
FspBI	CTAG	2 cut(s)	722, 813
GluI	GCNGC	1 cut(s)	592
GsuI	CTGGAG	2 cut(s)	695, 701
HapII	CCGG	2 cut(s)	108, 789
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	2 cut(s)	20, 39
HindIII	AAGCTT	1 cut(s)	763
HinfI	GANTC	4 cut(s)	262, 480, 563, 740
HpaII	CCGG	2 cut(s)	108, 789
HphI	GGTGA	4 cut(s)	122, 155, 550, 778
Hpy166II	GTNNAC	3 cut(s)	146, 304, 684
Hpy188I	TCNGA	3 cut(s)	479, 711, 798
Hpy188III	TCNNGA	3 cut(s)	428, 484, 704
Hpy8I	GTNNAC	3 cut(s)	146, 304, 684
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	456, 538
HpyCH4III	ACNGT	3 cut(s)	508, 579, 728
HpyCH4IV	ACGT	2 cut(s)	325, 408
HpyCH4V	TGCA	1 cut(s)	39
HpySE526I	ACGT	2 cut(s)	325, 408
Hsp92II	CATG	2 cut(s)	20, 39
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	2 cut(s)	320, 706
LmnI	GCTCC	1 cut(s)	720
LweI	GCATC	2 cut(s)	603, 702
MaeI	CTAG	2 cut(s)	722, 813
MaeII	ACGT	2 cut(s)	325, 408
MaeIII	GTNAC	5 cut(s)	12, 432, 460, 502, 557
MalI	GATC	2 cut(s)	322, 708
MboI	GATC	2 cut(s)	320, 706
MboII	GAAGA	4 cut(s)	302, 347, 644, 705
MhlI	GDGCHC	1 cut(s)	803
MluCI	AATT	4 cut(s)	21, 295, 393, 774
MlyI	GAGTC	3 cut(s)	256, 489, 572
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	7 cut(s)	67, 69, 241, 408, 485, 670, 781
MseI	TTAA	4 cut(s)	159, 345, 470, 609
MspI	CCGG	2 cut(s)	108, 789
MspR9I	CCNGG	3 cut(s)	453, 690, 790
MvaI	CCWGG	2 cut(s)	453, 690
NciI	CCSGG	1 cut(s)	790
NdeII	GATC	2 cut(s)	320, 706
NlaIII	CATG	2 cut(s)	20, 39
NmuCI	GTSAC	2 cut(s)	12, 460
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	740
PfoI	TCCNGGA	2 cut(s)	451, 688
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	593
PleI	GAGTC	3 cut(s)	256, 488, 571
PpsI	GAGTC	3 cut(s)	256, 488, 571
Ppu21I	YACGTR	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	803
Psp6I	CCWGG	2 cut(s)	451, 688
PspGI	CCWGG	2 cut(s)	451, 688
PspPI	GGNCC	1 cut(s)	570
RsaI	GTAC	3 cut(s)	5, 207, 305
RsaNI	GTAC	3 cut(s)	4, 206, 304
SacI	GAGCTC	1 cut(s)	803
SaqAI	TTAA	4 cut(s)	159, 345, 470, 609
SatI	GCNGC	1 cut(s)	592
Sau3AI	GATC	2 cut(s)	320, 706
Sau96I	GGNCC	1 cut(s)	570
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	3 cut(s)	256, 489, 572
ScrFI	CCNGG	3 cut(s)	453, 690, 790
SduI	GDGCHC	1 cut(s)	803
SfaNI	GCATC	2 cut(s)	603, 702
SinI	GGWCC	1 cut(s)	570
Sse9I	AATT	4 cut(s)	21, 295, 393, 774
SsiI	CCGC	2 cut(s)	333, 591
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	2 cut(s)	722, 813
SstI	GAGCTC	1 cut(s)	803
StyD4I	CCNGG	3 cut(s)	451, 688, 788
TaaI	ACNGT	3 cut(s)	508, 579, 728
TaiI	ACGT	2 cut(s)	328, 411
TaqI	TCGA	5 cut(s)	59, 228, 319, 405, 803
TasI	AATT	4 cut(s)	21, 295, 393, 774
TatI	WGTACW	3 cut(s)	3, 205, 303
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	4 cut(s)	159, 345, 470, 609
Tru9I	TTAA	4 cut(s)	159, 345, 470, 609
TscAI	CASTG	4 cut(s)	139, 365, 469, 678
TseFI	GTSAC	2 cut(s)	12, 460
Tsp45I	GTSAC	2 cut(s)	12, 460
TspDTI	ATGAA	3 cut(s)	24, 246, 557
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	4 cut(s)	139, 365, 469, 678
VpaK11BI	GGWCC	1 cut(s)	570
XapI	RAATTY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	2 cut(s)	722, 813
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.