Rh5DG192700

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017007
Physical Location & Seq
Reverse (-)
21449370 .. 21456663
7294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG192700.1

Sequence Viewer

Length: 705 bp
ATGGGACAGCAGGAACCCCGGCTGCAGCAAAAGTGGATGTTCCATGTGATTGTCATGCACGCTAACTTTCCTATCAGTAATGACTATAAAGTACTTTTGTTTGTGCCTGTAATCGATGAACCTGACAAAGTGGAGGTAAAGGTTTTGACTCTTGGCTCGTGGATTTGGAGAAGCATTGGGAATTTTGTGTACTCTCTTCGTTATCGATCACGTAATGGCGGGATTTATCTTAATGGTTTTCTTCACTGGATTGTTGGCTCTGTTGACGGCTCTCGTATAATTTGTGCTTTCAACGTTGAGAGGGAGTGTTTTCAAGAGTTACCCCTGCCACCTTCTCCTCGAAGCGTCACTGCTTTAAACCTCGGAATCTTGAAAGATTGGCTCTCTGTAACAGTTTGCTCTTATACCAAAATCATTGTTTGGGTGATGAAGGATTACGGCTGTAACGAGTCTTGGACCAAAGAGTTGGAAATAAGCGGCACCACTCCGTTTTTTAAACAAGTGATAGAACACACAGAAGACGGGAAAGCGTTATTGCTTGATAAAATGAGCCTTACACTGGAGGTGTATACTCCTGGAAGAAAGGGTCTTGATCAGATGCTCCGGCTAGACAGTCTCTCAATGGCTTCAATATTTCCTTACATTCCAAGCTTTGCCTCAATTAGAGATATCACCGGGTGTCCGAGCTCGAAATCATCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

234

Amino Acids

26.62

Weight (kDa)

7.63

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 24 - 155 3.3e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 569
AciI CCGC 2 cut(s) 219, 477
AclI AACGTT 1 cut(s) 294
AcsI RAATTY 1 cut(s) 181
AdeI CACNNNGTG 1 cut(s) 678
AfaI GTAC 2 cut(s) 93, 191
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 4 cut(s) 292, 314, 373, 630
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 2 cut(s) 651, 687
AluI AGCT 2 cut(s) 651, 687
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 1 cut(s) 620
ApeKI GCWGC 2 cut(s) 22, 25
ApoI RAATTY 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 456
AsuC2I CCSGG 2 cut(s) 19, 676
AsuHPI GGTGA 2 cut(s) 436, 664
AvaII GGWCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 689
BauI CACGAG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 2 cut(s) 9, 37
BceAI ACGGC 2 cut(s) 283, 454
BciT130I CCWGG 1 cut(s) 576
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 2 cut(s) 19, 676
BcoDI GTCTC 1 cut(s) 620
BfaI CTAG 2 cut(s) 608, 699
BfmI CTRYAG 1 cut(s) 23
BisI GCNGC 3 cut(s) 23, 26, 478
BlsI GCNGC 3 cut(s) 24, 27, 479
BmcAI AGTACT 1 cut(s) 93
Bme1390I CCNGG 3 cut(s) 19, 576, 676
Bme18I GGWCC 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 2 cut(s) 15, 481
BmrFI CCNGG 3 cut(s) 19, 576, 676
BmsI GCATC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 581
BpuMI CCSGG 2 cut(s) 19, 676
Bsa29I ATCGAT 2 cut(s) 114, 205
BsaAI YACGTR 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 17, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 2 cut(s) 251, 564
BseBI CCWGG 1 cut(s) 576
BseCI ATCGAT 2 cut(s) 114, 205
BseDI CCNNGG 2 cut(s) 17, 361
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 559
BseNI ACTGG 2 cut(s) 251, 564
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 2 cut(s) 9, 37
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 2 cut(s) 114, 205
BsiHKAI GWGCWC 1 cut(s) 689
BsiSI CCGG 3 cut(s) 19, 604, 675
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 689
Bsp143I GATC 2 cut(s) 206, 592
BspACI CCGC 2 cut(s) 219, 477
BspDI ATCGAT 2 cut(s) 114, 205
BspLI GGNNCC 2 cut(s) 15, 481
BspMAI CTGCAG 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 479
BsrI ACTGG 2 cut(s) 251, 564
BssECI CCNNGG 2 cut(s) 17, 361
BssMI GATC 2 cut(s) 206, 592
BssNAI GTATAC 1 cut(s) 570
BssSI CACGAG 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 570
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 2 cut(s) 394, 614
Bst6I CTCTTC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 60
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 2 cut(s) 209, 595
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 2 cut(s) 206, 592
BstNI CCWGG 1 cut(s) 576
BstSCI CCNGG 3 cut(s) 17, 574, 674
BstSFI CTRYAG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 9, 37
BstV2I GAAGAC 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 466
BstZ17I GTATAC 1 cut(s) 570
Bsu15I ATCGAT 2 cut(s) 114, 205
BsuTUI ATCGAT 2 cut(s) 114, 205
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 3 cut(s) 244, 348, 557
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 456
ClaI ATCGAT 2 cut(s) 114, 205
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 92, 190
CviAII CATG 2 cut(s) 44, 55
CviQI GTAC 2 cut(s) 92, 190
DpnI GATC 2 cut(s) 208, 594
DpnII GATC 2 cut(s) 206, 592
DraI TTTAAA 2 cut(s) 357, 496
DraIII CACNNNGTG 1 cut(s) 678
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 689
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 687
EcoRII CCWGG 1 cut(s) 574
EcoRV GATATC 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 689
FaeI CATG 2 cut(s) 47, 58
FaiI YATR 6 cut(s) 45, 56, 87, 278, 405, 570
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 43, 54
FauI CCCGC 1 cut(s) 212
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 569
Fnu4HI GCNGC 3 cut(s) 23, 26, 478
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 3 cut(s) 23, 26, 478
FspBI CTAG 2 cut(s) 608, 699
GluI GCNGC 3 cut(s) 23, 26, 478
GsuI CTGGAG 1 cut(s) 581
HapII CCGG 3 cut(s) 19, 604, 675
HgaI GACGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 47, 58
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 3 cut(s) 148, 366, 449
HpaII CCGG 3 cut(s) 19, 604, 675
HphI GGTGA 2 cut(s) 436, 664
Hpy166II GTNNAC 3 cut(s) 190, 265, 570
Hpy188I TCNGA 3 cut(s) 365, 597, 684
Hpy188III TCNNGA 3 cut(s) 314, 370, 590
Hpy8I GTNNAC 3 cut(s) 190, 265, 570
HpyAV CCTTC 2 cut(s) 342, 424
HpyCH4III ACNGT 2 cut(s) 394, 614
HpyCH4IV ACGT 2 cut(s) 211, 294
HpyCH4V TGCA 2 cut(s) 25, 58
HpySE526I ACGT 2 cut(s) 211, 294
Hsp92II CATG 2 cut(s) 47, 58
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 206, 592
LmnI GCTCC 1 cut(s) 606
Lsp1109I GCAGC 2 cut(s) 9, 37
LweI GCATC 1 cut(s) 588
MaeI CTAG 2 cut(s) 608, 699
MaeII ACGT 2 cut(s) 211, 294
MaeIII GTNAC 4 cut(s) 318, 346, 388, 443
MalI GATC 2 cut(s) 208, 594
MboI GATC 2 cut(s) 206, 592
MboII GAAGA 4 cut(s) 188, 233, 530, 591
MhlI GDGCHC 1 cut(s) 689
MluCI AATT 3 cut(s) 181, 279, 660
MlyI GAGTC 2 cut(s) 142, 458
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 6 cut(s) 127, 294, 348, 371, 556, 667
MseI TTAA 4 cut(s) 231, 356, 495, 703
MspI CCGG 3 cut(s) 19, 604, 675
MspR9I CCNGG 3 cut(s) 19, 576, 676
MvaI CCWGG 1 cut(s) 576
NciI CCSGG 2 cut(s) 19, 676
NdeII GATC 2 cut(s) 206, 592
NlaIII CATG 2 cut(s) 47, 58
NlaIV GGNNCC 2 cut(s) 15, 481
NmuCI GTSAC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PfeI GAWTC 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 3 cut(s) 24, 27, 479
PleI GAGTC 2 cut(s) 142, 457
PpsI GAGTC 2 cut(s) 142, 457
Ppu21I YACGTR 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 689
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 15, 481
PspPI GGNCC 1 cut(s) 456
PstI CTGCAG 1 cut(s) 27
RsaI GTAC 2 cut(s) 93, 191
RsaNI GTAC 2 cut(s) 92, 190
SacI GAGCTC 1 cut(s) 689
SaqAI TTAA 4 cut(s) 231, 356, 495, 703
SatI GCNGC 3 cut(s) 23, 26, 478
Sau3AI GATC 2 cut(s) 206, 592
Sau96I GGNCC 1 cut(s) 456
ScaI AGTACT 1 cut(s) 93
SchI GAGTC 2 cut(s) 142, 458
ScrFI CCNGG 3 cut(s) 19, 576, 676
SduI GDGCHC 1 cut(s) 689
SfaNI GCATC 1 cut(s) 588
SfcI CTRYAG 1 cut(s) 23
SinI GGWCC 1 cut(s) 456
Sse9I AATT 3 cut(s) 181, 279, 660
SsiI CCGC 2 cut(s) 219, 477
SspI AATATT 1 cut(s) 633
SspMI CTAG 2 cut(s) 608, 699
SstI GAGCTC 1 cut(s) 689
StyD4I CCNGG 3 cut(s) 17, 574, 674
TaaI ACNGT 2 cut(s) 394, 614
TaiI ACGT 2 cut(s) 214, 297
TaqI TCGA 4 cut(s) 114, 205, 340, 689
TasI AATT 3 cut(s) 181, 279, 660
TatI WGTACW 2 cut(s) 91, 189
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 4 cut(s) 231, 356, 495, 703
Tru9I TTAA 4 cut(s) 231, 356, 495, 703
TscAI CASTG 3 cut(s) 251, 355, 564
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 22, 25
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 132, 443
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 3 cut(s) 251, 355, 564
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 569
XspI CTAG 2 cut(s) 608, 699
ZrmI AGTACT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.