Rmu_sc0007802.1_g000024

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007802.1
OG0017007
Physical Location & Seq
Reverse (-)
74837 .. 75676
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007802.1_g000024.1.cds

Sequence Viewer

Length: 840 bp
atgaagtttcgtagtgatggaaatcccacatacaatcagcaatatgtaactgttgtgggttcatgcaatggcttcctttttctatacaattttgcctggcgtttatttgataggacgcctttttacatatccaatcccttgaccggtgagtcattatcttttccacctactgatagtggtgaacaggatgatattaacggttttggttttggatttagtcctatcagtgatgcctataaagtacttctgtttgtgcctgcaatcgatgaacctgacaaagtggaggtaaaggttttgactcttggctcgtggatttggagaagcattgggaattatgtgttctcatctcttcgttatcaatcacgttatcgcgggatttatctcaatggttttcttcactggattggtggctctattgagggctctggtataattgcctttgacgttgagagggaacgttttcaagagttacccctcccaccttcttgtttaagtttaaatgtaagcgtcactttagacctcggagtcttgaaaggttgcctgtctgtaacagttcgctctggtaccatactcaatatttgggcgatgaaggattatggctgtaatgagtcttggaccaaagacttggaaataagcggcactgatctgtttgataaacaagtgatggaatacacagaagatgggaaagcgttattgttagatggacgtagacttcaggtgtatactcctggaagagagggtcttgagatcctcgtggtagatgggagacagcattcaattataacgtcaaaatttccctacattccaagctttggctcaattagagatatcaccgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

279

Amino Acids

31.36

Weight (kDa)

4.97

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AasI GACNNNNNNGTC 2 cut(s) 148, 524
Acc65I GGTACC 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 812
AccI GTMKAC 2 cut(s) 709, 722
AccII CGCG 1 cut(s) 372
AciI CCGC 2 cut(s) 372, 636
AclI AACGTT 1 cut(s) 457
AclWI GGATC 1 cut(s) 742
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 2 cut(s) 243, 565
AfiI CCNNNNNNNGG 2 cut(s) 143, 812
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 3 cut(s) 464, 532, 777
AjnI CCWGG 2 cut(s) 95, 727
AluBI AGCT 1 cut(s) 810
AluI AGCT 1 cut(s) 810
Alw26I GTCTC 1 cut(s) 760
AlwI GGATC 1 cut(s) 742
ApoI RAATTY 1 cut(s) 791
AsiGI ACCGGT 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 459
Asp718I GGTACC 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 615
AsuC2I CCSGG 1 cut(s) 835
AsuHPI GGTGA 3 cut(s) 158, 191, 823
AvaII GGWCC 1 cut(s) 615
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 425
BauI CACGAG 2 cut(s) 307, 752
BccI CCATC 5 cut(s) 11, 658, 674, 695, 755
BciT130I CCWGG 2 cut(s) 97, 729
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 760
BisI GCNGC 1 cut(s) 637
BlsI GCNGC 1 cut(s) 638
BmcAI AGTACT 1 cut(s) 243
Bme1390I CCNGG 3 cut(s) 97, 729, 835
Bme18I GGWCC 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 3 cut(s) 97, 729, 835
BmsI GCATC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 764
BpuMI CCSGG 1 cut(s) 835
Bsa29I ATCGAT 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 520
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 812
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 2 cut(s) 97, 729
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 143, 812
BseMI GCAATG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 563
BshTI ACCGGT 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 264
BsiSI CCGG 2 cut(s) 144, 834
BslI CCNNNNNNNGG 2 cut(s) 143, 812
BsmAI GTCTC 1 cut(s) 760
BsmI GAATGC 1 cut(s) 772
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 2 cut(s) 643, 747
BspACI CCGC 2 cut(s) 372, 636
BspDI ATCGAT 1 cut(s) 264
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 404
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 2 cut(s) 643, 747
BssNAI GTATAC 1 cut(s) 723
BssNI GRCGYC 1 cut(s) 116
BssSI CACGAG 2 cut(s) 307, 752
Bst1107I GTATAC 1 cut(s) 723
Bst2BI CACGAG 2 cut(s) 307, 752
Bst2UI CCWGG 2 cut(s) 97, 729
Bst4CI ACNGT 3 cut(s) 52, 200, 553
Bst6I CTCTTC 2 cut(s) 354, 727
BstACI GRCGYC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 258
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 2 cut(s) 646, 750
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 2 cut(s) 643, 747
BstNI CCWGG 2 cut(s) 97, 729
BstSCI CCNGG 3 cut(s) 95, 727, 833
BstUI CGCG 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 625
BstYI RGATCY 1 cut(s) 747
BstZ17I GTATAC 1 cut(s) 723
Bsu15I ATCGAT 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 599
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 232, 397, 639
Cac8I GCNNGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 615
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 2 cut(s) 124, 496
Csp6I GTAC 2 cut(s) 242, 564
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 1 cut(s) 63
CviJI RGCY 7 cut(s) 72, 306, 411, 423, 600, 810, 816
CviKI_1 RGCY 7 cut(s) 72, 306, 411, 423, 600, 810, 816
CviQI GTAC 2 cut(s) 242, 564
DpnI GATC 2 cut(s) 645, 749
DpnII GATC 2 cut(s) 643, 747
DraI TTTAAA 1 cut(s) 498
DrdI GACNNNNNNGTC 2 cut(s) 148, 524
DseDI GACNNNNNNGTC 2 cut(s) 148, 524
Eam1104I CTCTTC 2 cut(s) 354, 727
EarI CTCTTC 2 cut(s) 354, 727
Eco24I GRGCYC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 615
Eco57I CTGAAG 1 cut(s) 698
EcoRII CCWGG 2 cut(s) 95, 727
EcoRV GATATC 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 425
FaeI CATG 1 cut(s) 66
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FatI CATG 1 cut(s) 62
FauI CCCGC 1 cut(s) 365
FblI GTMKAC 2 cut(s) 709, 722
Fnu4HI GCNGC 1 cut(s) 637
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 637
GluI GCNGC 1 cut(s) 637
HapII CCGG 2 cut(s) 144, 834
HgaI GACGC 2 cut(s) 124, 496
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 4 cut(s) 149, 298, 525, 608
HpaII CCGG 2 cut(s) 144, 834
HphI GGTGA 3 cut(s) 158, 191, 823
Hpy166II GTNNAC 3 cut(s) 182, 710, 723
Hpy188I TCNGA 1 cut(s) 524
Hpy188III TCNNGA 3 cut(s) 464, 529, 743
Hpy8I GTNNAC 3 cut(s) 182, 710, 723
HpyAV CCTTC 2 cut(s) 492, 583
HpyCH4III ACNGT 3 cut(s) 52, 200, 553
HpyCH4IV ACGT 5 cut(s) 364, 444, 457, 706, 785
HpyCH4V TGCA 2 cut(s) 66, 260
HpySE526I ACGT 5 cut(s) 364, 444, 457, 706, 785
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 66
KpnI GGTACC 1 cut(s) 567
Kzo9I GATC 2 cut(s) 643, 747
LweI GCATC 1 cut(s) 220
MaeII ACGT 5 cut(s) 364, 444, 457, 706, 785
MaeIII GTNAC 4 cut(s) 46, 468, 508, 547
MalI GATC 2 cut(s) 645, 749
MboI GATC 2 cut(s) 643, 747
MboII GAAGA 4 cut(s) 341, 386, 689, 744
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 6 cut(s) 88, 331, 432, 777, 791, 819
MlyI GAGTC 4 cut(s) 158, 292, 534, 617
MnlI CCTC 7 cut(s) 277, 412, 444, 485, 530, 730, 761
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 3 cut(s) 195, 491, 497
MspI CCGG 2 cut(s) 144, 834
MspR9I CCNGG 3 cut(s) 97, 729, 835
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 2 cut(s) 97, 729
MvnI CGCG 1 cut(s) 372
NciI CCSGG 1 cut(s) 835
NdeII GATC 2 cut(s) 643, 747
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 508
PctI GAATGC 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 459
PflMI CCANNNNNTGG 1 cut(s) 812
PfoI TCCNGGA 1 cut(s) 727
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 1 cut(s) 638
PleI GAGTC 4 cut(s) 157, 292, 533, 616
PpsI GAGTC 4 cut(s) 157, 292, 533, 616
PsiI TTATAA 1 cut(s) 782
Psp1406I AACGTT 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 95, 727
PspGI CCWGG 2 cut(s) 95, 727
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 1 cut(s) 615
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 2 cut(s) 243, 565
RsaNI GTAC 2 cut(s) 242, 564
SaqAI TTAA 3 cut(s) 195, 491, 497
SatI GCNGC 1 cut(s) 637
Sau3AI GATC 2 cut(s) 643, 747
Sau96I GGNCC 1 cut(s) 615
ScaI AGTACT 1 cut(s) 243
SchI GAGTC 4 cut(s) 158, 292, 534, 617
ScrFI CCNGG 3 cut(s) 97, 729, 835
SduI GDGCHC 1 cut(s) 425
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
Sse9I AATT 6 cut(s) 88, 331, 432, 777, 791, 819
SsiI CCGC 2 cut(s) 372, 636
SspI AATATT 1 cut(s) 577
StyD4I CCNGG 3 cut(s) 95, 727, 833
TaaI ACNGT 3 cut(s) 52, 200, 553
TaiI ACGT 5 cut(s) 367, 447, 460, 709, 788
TaqI TCGA 1 cut(s) 264
TasI AATT 6 cut(s) 88, 331, 432, 777, 791, 819
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 639
Tru1I TTAA 3 cut(s) 195, 491, 497
Tru9I TTAA 3 cut(s) 195, 491, 497
TscAI CASTG 3 cut(s) 232, 404, 646
TseFI GTSAC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 4 cut(s) 17, 51, 282, 602
TspRI CASTG 3 cut(s) 232, 404, 646
Van91I CCANNNNNTGG 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 615
XapI RAATTY 1 cut(s) 791
XmiI GTMKAC 2 cut(s) 709, 722
XmnI GAANNNNTTC 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.