Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017007

Physical Location & Seq

Genomic Coordinates Reverse (-)

21440387 .. 21441538

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG211400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACAACCAAAGTTTGCCAGAATAATGGTGGACTAGTACCAAACCAAGAAGATAAGAAACCCTACCTTCTTCAATTACCGGACCACATAATAGCAGAGATCTTGTGCAAACTTCCAACCAAAACGCTCGTCCAATGCCAGCTTGTGTGCAAGTCTTGGCGCTGTTACCCCCAGTTATCTAGAGACCTGTTTTCACGAACACCCACATGCCTTTTGGTCCACGACCGGAGCCCGTGCTGCAAATTGTTGACATTGGTAGACCTCAAAAGCAACTTTATTCAAGAAGATGCCGTATTGAGGTTTCGTAGTGATGGAAATCCCATGTACAATCCGTCACATCGAACTATTGTGGGTTCATGCAATGGCTTCCTTTTTATATACCATTTTGCCTCGACTTTCTGTGGTAGGAGGCGTTTTTACAGCATATCCAATCCCTTGACCGGTGAGTCTTTATCTTTTCCACCTACTGATACTGGTGAACAGAATGATATTAAAGATTTTGGTTTTGGATTTAGTCCTATCAGTAATGCGTATAAAGTACTTCTGTTTGTGCCTGTAATCGATGAACCTGACAAAGTGGAGGTAAAGGTTTTGACTCTTGGCTTGTGGATTTGGAGAAGCATTGGGAATTTTGTGTACTCTCTTCGTTATCCATCACGTAATGGCGGGATTTATCTTAATGGTTTTCTTCACTGGATTGGTGGCTCTGTTGACGGCTCTCGTATAATTTGTGCTTTCGACGTTGAGAGGGAGTGTTTTCAAGAGTTACCCCTGCCACCTTCTCCTCGAAGCGTCACTGCTTTAAACCTCGGAATCTTGAAAGATTGGCTCTCTGTAACAGTTTGCTCTTATACCAAAATCATTGTTTGGGTGATGAAGGATTACGGCTGTAACGAGTCTTGGACCAAAGAGTTGGAAATAAGCGGCACCACTCCGTTTTTTAAACAAGTGATAGAACACACAGAAGACGGGAAAGCGTTATTGCTTGATAAAATGAGCCTTGCACTGGAGGTGTATACTCCTGGAAGAAAGGGTCTTGATCAGATGCTCCGGCTAGACAGTCTCTCAATGGCTTCAATATTTCCTTACATTCCAAGCTTTGCCTCAATTAGAGATATCACCGGGTGTCCGAGCTCGAAATCATCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

383

Amino Acids

43.15

Weight (kDa)

8.1

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 54	3.1e-09	F-box domain
F-box-like	PF12937	24 - 54	2.1e-07	F-box-like
FBA_1	PF07734	111 - 370	6.8e-17	F-box associated beta propeller domain
FBA_3	PF08268	112 - 304	1.8e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017007)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0027451
rosa_laevigata	RLG00000033021
rosa_multiflora	Rmu_sc0003500.1_g000048 Rmu_sc0007802.1_g000023 Rmu_sc0007802.1_g000024
rosa_roxburghii	Rroxscaffold_1G00052070 Rroxscaffold_1G00052080
rosa_samantha	Rh5AG193200 Rh5BG191000 Rh5BG191300 Rh5CG211400 Rh5CG211500 Rh5DG192700
rosa_wichuraiana	Rw5G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	926
AccI	GTMKAC	2 cut(s)	258, 1016
AciI	CCGC	2 cut(s)	666, 924
AcsI	RAATTY	1 cut(s)	628
AdeI	CACNNNGTG	1 cut(s)	1125
AfaI	GTAC	4 cut(s)	39, 326, 540, 638
AfiI	CCNNNNNNNGG	3 cut(s)	297, 440, 1006
AgeI	ACCGGT	1 cut(s)	440
AgsI	TTSAA	5 cut(s)	74, 281, 761, 820, 1077
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	1021
AluBI	AGCT	3 cut(s)	142, 1098, 1134
AluI	AGCT	3 cut(s)	142, 1098, 1134
Alw21I	GWGCWC	1 cut(s)	1136
Alw26I	GTCTC	2 cut(s)	177, 1067
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	628
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AsiGI	ACCGGT	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	82, 217, 903
AsuC2I	CCSGG	1 cut(s)	1123
AsuHPI	GGTGA	4 cut(s)	455, 488, 883, 1111
AvaII	GGWCC	3 cut(s)	82, 217, 903
BanI	GGYRCC	1 cut(s)	926
BanII	GRGCYC	2 cut(s)	233, 1136
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	1136
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	305, 661
BceAI	ACGGC	3 cut(s)	275, 730, 901
BciT130I	CCWGG	1 cut(s)	1023
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	1 cut(s)	1123
BcoDI	GTCTC	2 cut(s)	177, 1067
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	4 cut(s)	35, 180, 1055, 1146
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	2 cut(s)	238, 925
BlsI	GCNGC	2 cut(s)	239, 926
BmcAI	AGTACT	1 cut(s)	540
Bme1390I	CCNGG	2 cut(s)	1023, 1123
Bme18I	GGWCC	3 cut(s)	82, 217, 903
BmgT120I	GGNCC	3 cut(s)	82, 217, 903
BmiI	GGNNCC	2 cut(s)	230, 928
BmrFI	CCNGG	2 cut(s)	1023, 1123
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	277, 1035
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	972
BpmI	CTGGAG	1 cut(s)	1028
BpuMI	CCSGG	1 cut(s)	1123
Bsa29I	ATCGAT	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	659
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	808
BsaWI	WCCGGW	3 cut(s)	79, 225, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 440, 1006
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	4 cut(s)	172, 478, 698, 1011
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	1023
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	808
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	297, 440, 1006
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	4 cut(s)	172, 478, 698, 1011
BseRI	GAGGAG	1 cut(s)	774
BseXI	GCAGC	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	926
BshTI	ACCGGT	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	1136
BsiSI	CCGG	5 cut(s)	80, 226, 441, 1051, 1122
BslI	CCNNNNNNNGG	3 cut(s)	297, 440, 1006
BsmAI	GTCTC	2 cut(s)	177, 1067
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	233, 1136
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	99, 1039
BspACI	CCGC	2 cut(s)	666, 924
BspDI	ATCGAT	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	230, 928
BspT107I	GGYRCC	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	4 cut(s)	172, 478, 698, 1011
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	808
BssMI	GATC	2 cut(s)	99, 1039
BssNAI	GTATAC	1 cut(s)	1017
Bst1107I	GTATAC	1 cut(s)	1017
Bst2UI	CCWGG	1 cut(s)	1023
Bst4CI	ACNGT	2 cut(s)	841, 1061
Bst6I	CTCTTC	1 cut(s)	648
BstAUI	TGTACA	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	2 cut(s)	102, 1042
BstMAI	GTCTC	2 cut(s)	177, 1067
BstMBI	GATC	2 cut(s)	99, 1039
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	1023
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	1021, 1121
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	2 cut(s)	26, 913
BstYI	RGATCY	1 cut(s)	99
BstZ17I	GTATAC	1 cut(s)	1017
Bsu15I	ATCGAT	1 cut(s)	561
BsuTUI	ATCGAT	1 cut(s)	561
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	3 cut(s)	691, 795, 1004
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	82, 217, 903
ClaI	ATCGAT	1 cut(s)	561
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	4 cut(s)	38, 325, 539, 637
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	3 cut(s)	207, 322, 357
CviQI	GTAC	4 cut(s)	38, 325, 539, 637
DpnI	GATC	2 cut(s)	101, 1041
DpnII	GATC	2 cut(s)	99, 1039
DraI	TTTAAA	2 cut(s)	804, 943
DraIII	CACNNNGTG	1 cut(s)	1125
DrdI	GACNNNNNNGTC	1 cut(s)	445
DseDI	GACNNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	1134
Eco24I	GRGCYC	2 cut(s)	233, 1136
Eco31I	GGTCTC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	3 cut(s)	82, 217, 903
Eco53kI	GAGCTC	1 cut(s)	1134
EcoICRI	GAGCTC	1 cut(s)	1134
EcoRII	CCWGG	1 cut(s)	1021
EcoRV	GATATC	1 cut(s)	1117
EcoT38I	GRGCYC	2 cut(s)	233, 1136
FaeI	CATG	3 cut(s)	210, 325, 360
FatI	CATG	3 cut(s)	206, 321, 356
FauI	CCCGC	1 cut(s)	659
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	2 cut(s)	258, 1016
Fnu4HI	GCNGC	2 cut(s)	238, 925
FriOI	GRGCYC	2 cut(s)	233, 1136
Fsp4HI	GCNGC	2 cut(s)	238, 925
FspBI	CTAG	4 cut(s)	35, 180, 1055, 1146
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	238, 925
GsuI	CTGGAG	1 cut(s)	1028
HaeII	RGCGCY	1 cut(s)	163
HapII	CCGG	5 cut(s)	80, 226, 441, 1051, 1122
HgaI	GACGC	1 cut(s)	781
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	210, 325, 360
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	2 cut(s)	249, 712
HindII	GTYRAC	2 cut(s)	249, 712
HindIII	AAGCTT	1 cut(s)	1096
HinfI	GANTC	4 cut(s)	446, 595, 813, 896
HpaII	CCGG	5 cut(s)	80, 226, 441, 1051, 1122
HphI	GGTGA	4 cut(s)	455, 488, 883, 1111
Hpy166II	GTNNAC	8 cut(s)	32, 220, 249, 259, 479, 637, 712, 1017
Hpy188I	TCNGA	3 cut(s)	812, 1044, 1131
Hpy188III	TCNNGA	6 cut(s)	180, 195, 281, 761, 817, 1037
Hpy8I	GTNNAC	8 cut(s)	32, 220, 249, 259, 479, 637, 712, 1017
Hpy99I	CGWCG	1 cut(s)	743
HpyAV	CCTTC	3 cut(s)	77, 789, 871
HpyCH4III	ACNGT	2 cut(s)	841, 1061
HpyCH4IV	ACGT	2 cut(s)	658, 741
HpyCH4V	TGCA	5 cut(s)	108, 150, 240, 360, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpySE526I	ACGT	2 cut(s)	658, 741
Hsp92II	CATG	3 cut(s)	210, 325, 360
HspAI	GCGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	2 cut(s)	99, 1039
LmnI	GCTCC	2 cut(s)	228, 1053
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	2 cut(s)	277, 1035
MaeI	CTAG	4 cut(s)	35, 180, 1055, 1146
MaeII	ACGT	2 cut(s)	658, 741
MaeIII	GTNAC	6 cut(s)	164, 333, 765, 793, 835, 890
MalI	GATC	2 cut(s)	101, 1041
MboI	GATC	2 cut(s)	99, 1039
MboII	GAAGA	7 cut(s)	62, 62, 296, 635, 680, 977, 1038
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	233, 1136
MluCI	AATT	5 cut(s)	74, 242, 628, 726, 1107
MlyI	GAGTC	3 cut(s)	455, 589, 905
MmeI	TCCRAC	2 cut(s)	140, 894
MseI	TTAA	5 cut(s)	492, 678, 803, 942, 1150
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	5 cut(s)	80, 226, 441, 1051, 1122
MspR9I	CCNGG	2 cut(s)	1023, 1123
MvaI	CCWGG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	1123
NdeII	GATC	2 cut(s)	99, 1039
NlaIII	CATG	3 cut(s)	210, 325, 360
NlaIV	GGNNCC	2 cut(s)	230, 928
NmuCI	GTSAC	2 cut(s)	333, 793
NspI	RCATGY	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	813
PfoI	TCCNGGA	1 cut(s)	1021
PinAI	ACCGGT	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	239, 926
PleI	GAGTC	3 cut(s)	454, 589, 904
PpsI	GAGTC	3 cut(s)	454, 589, 904
Ppu21I	YACGTR	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	1136
Psp6I	CCWGG	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	1021
PspN4I	GGNNCC	2 cut(s)	230, 928
PspPI	GGNCC	3 cut(s)	82, 217, 903
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	4 cut(s)	39, 326, 540, 638
RsaNI	GTAC	4 cut(s)	38, 325, 539, 637
RseI	CAYNNNNRTG	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	1136
SaqAI	TTAA	5 cut(s)	492, 678, 803, 942, 1150
SatI	GCNGC	2 cut(s)	238, 925
Sau3AI	GATC	2 cut(s)	99, 1039
Sau96I	GGNCC	3 cut(s)	82, 217, 903
ScaI	AGTACT	1 cut(s)	540
SchI	GAGTC	3 cut(s)	455, 589, 905
ScrFI	CCNGG	2 cut(s)	1023, 1123
SduI	GDGCHC	2 cut(s)	233, 1136
SfaNI	GCATC	2 cut(s)	277, 1035
SinI	GGWCC	3 cut(s)	82, 217, 903
SmiMI	CAYNNNNRTG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	5 cut(s)	74, 242, 628, 726, 1107
SsiI	CCGC	2 cut(s)	666, 924
SspI	AATATT	1 cut(s)	1080
SspMI	CTAG	4 cut(s)	35, 180, 1055, 1146
SstI	GAGCTC	1 cut(s)	1136
StyD4I	CCNGG	2 cut(s)	1021, 1121
TaaI	ACNGT	2 cut(s)	841, 1061
TaiI	ACGT	2 cut(s)	661, 744
TaqI	TCGA	6 cut(s)	340, 392, 561, 738, 787, 1136
TasI	AATT	5 cut(s)	74, 242, 628, 726, 1107
TatI	WGTACW	3 cut(s)	324, 538, 636
TauI	GCSGC	1 cut(s)	927
TfiI	GAWTC	1 cut(s)	813
Tru1I	TTAA	5 cut(s)	492, 678, 803, 942, 1150
Tru9I	TTAA	5 cut(s)	492, 678, 803, 942, 1150
TscAI	CASTG	3 cut(s)	698, 802, 1011
TseFI	GTSAC	2 cut(s)	333, 793
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	2 cut(s)	333, 793
TspDTI	ATGAA	3 cut(s)	345, 579, 890
TspGWI	ACGGA	2 cut(s)	321, 924
TspRI	CASTG	3 cut(s)	698, 802, 1011
VpaK11BI	GGWCC	3 cut(s)	82, 217, 903
XapI	RAATTY	1 cut(s)	628
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 211
XmiI	GTMKAC	2 cut(s)	258, 1016
XspI	CTAG	4 cut(s)	35, 180, 1055, 1146
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.