Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017007

Physical Location & Seq

Genomic Coordinates Reverse (-)

22319414 .. 22320454

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACAACCAAAGTTTGCCAGAATAATGGCGGACTAGTACCAAACCAAGATGATAAAAAGCCCTGCCTTCTTCAATTACCGGACCACATAATAGCGGAGATCTTGTGCAAACTTCCAACCAAAACGCTCGTTCAATGCCAGCTTGTGTGCAGGTCTTGGCGCTGTTACCCCCACTTGTCTAGAGACCTGTTTTCACGAACACCCACATGCCTTTTCCTCTACGACTGGAGCCCGTGCTGCAGATTGTTCACATTGGTAGACCTCAAGAACAACTTAATTCAAGATGCCGTAATGAAGTTTCGTAGTGATGGAAATCCCACATACAATGAGCTATTTGTAACTTTTGTGGGTTCATGCAATGGCTTCCTTTTTCTATACAATTTTTCCTGGCGTTTCTTTGATAGGAGTAGGACGCGTTTTTACATATCCAATCCCTTGACCGGTGAGTCATTATCTTTTCCACCTACTGATACTGGTGAACAGGTTGATATTACAGGTTTTGGTTTTGGATTTAGTCCTATCAGTAATGCCTATAAAGTATTTCTGTTTGTGCCTGTAATCGATGAACCTGACAAACTGGAGGTAAAGGTTTTGACTCTTGGCTCGTGGATTTGGAGAAGCATTGGGAATTATGTGTTCTCATCTCTTCGTTATCAATCACGTTATCGCGGGATTTATCTCAATGGTTTTCTTCATTGGATTGGTGGCTCTATTGAGGGCTCTGGTATAATTGCCTTTGACATTGAGAGGGAATGTTTTCAAGAGTTACCCCTGCCACCTTCTTGTTTAAGTTTAAATGTATGCGTCACTTTAGACCTCGGAGTCTTGAAAGGTTGCCTCTCTGTAACAGTTCGCTCTGGTACCAAACTCATTGTTTGGGCGATGAAGGATTATGGCTGTAATGAGTCTTGGACCAAAGACTTGGAAATAAGCGGCACTGATCTGTTTGATAAACAAGTGATGGAATACACAGAAGAGGGGAAAGCGTTATTGTTAGATGGACGTAGACTTCAGGTGTATACTCCTGGAAGAGGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

347

Amino Acids

39.35

Weight (kDa)

6.8

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 54	4.9e-09	F-box domain
F-box-like	PF12937	24 - 54	1.8e-07	F-box-like
FBA_1	PF07734	95 - 317	2.5e-16	F-box associated beta propeller domain
FBA_3	PF08268	111 - 307	1.1e-16	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017007)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0027451
rosa_laevigata	RLG00000033021
rosa_multiflora	Rmu_sc0003500.1_g000048 Rmu_sc0007802.1_g000023 Rmu_sc0007802.1_g000024
rosa_roxburghii	Rroxscaffold_1G00052070 Rroxscaffold_1G00052080
rosa_samantha	Rh5AG193200 Rh5BG191000 Rh5BG191300 Rh5CG211400 Rh5CG211500 Rh5DG192700
rosa_wichuraiana	Rw5G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	445, 821
Acc36I	ACCTGC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	860
AccB1I	GGYRCC	1 cut(s)	860
AccI	GTMKAC	3 cut(s)	258, 1006, 1019
AccII	CGCG	2 cut(s)	415, 669
AciI	CCGC	4 cut(s)	30, 95, 669, 933
AcuI	CTGAAG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	39, 862
AfiI	CCNNNNNNNGG	2 cut(s)	440, 1031
AflIII	ACRYGT	1 cut(s)	413
AgeI	ACCGGT	1 cut(s)	440
AgsI	TTSAA	5 cut(s)	74, 134, 281, 761, 829
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	386, 1024
AluBI	AGCT	2 cut(s)	142, 331
AluI	AGCT	2 cut(s)	142, 331
Alw26I	GTCTC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	237
AsiGI	ACCGGT	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	756
Asp718I	GGTACC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	82, 912
AsuHPI	GGTGA	2 cut(s)	455, 488
AvaII	GGWCC	2 cut(s)	82, 912
BanI	GGYRCC	1 cut(s)	860
BanII	GRGCYC	2 cut(s)	233, 722
BauI	CACGAG	1 cut(s)	604
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	3 cut(s)	302, 955, 992
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	388, 1026
BcoDI	GTCTC	1 cut(s)	177
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 180
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	141
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	2 cut(s)	238, 934
BlsI	GCNGC	2 cut(s)	239, 935
Bme1390I	CCNGG	2 cut(s)	388, 1026
Bme18I	GGWCC	2 cut(s)	82, 912
BmgT120I	GGNCC	2 cut(s)	82, 912
BmiI	GGNNCC	2 cut(s)	230, 862
BmrFI	CCNGG	2 cut(s)	388, 1026
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	2 cut(s)	247, 599
BpuEI	CTTGAG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	817
BsaWI	WCCGGW	2 cut(s)	79, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 1031
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	3 cut(s)	230, 478, 582
Bse3DI	GCAATG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	388, 1026
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	817
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	440, 1031
BseMI	GCAATG	1 cut(s)	364
BseNI	ACTGG	3 cut(s)	230, 478, 582
BseXI	GCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	415, 669
BshNI	GGYRCC	1 cut(s)	860
BshTI	ACCGGT	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	80, 441
BslI	CCNNNNNNNGG	2 cut(s)	440, 1031
BsmAI	GTCTC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	233, 722
Bsp143I	GATC	2 cut(s)	99, 940
BspACI	CCGC	4 cut(s)	30, 95, 669, 933
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	2 cut(s)	415, 669
BspLI	GGNNCC	2 cut(s)	230, 862
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	860
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	3 cut(s)	230, 478, 582
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	817
BssMI	GATC	2 cut(s)	99, 940
BssNAI	GTATAC	1 cut(s)	1020
BssSI	CACGAG	1 cut(s)	604
Bst1107I	GTATAC	1 cut(s)	1020
Bst2BI	CACGAG	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	388, 1026
Bst4CI	ACNGT	1 cut(s)	850
Bst6I	CTCTTC	3 cut(s)	651, 969, 1024
BstC8I	GCNNGC	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	1029
BstFNI	CGCG	2 cut(s)	415, 669
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	2 cut(s)	102, 943
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	99, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	388, 1026
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	386, 1024
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	2 cut(s)	415, 669
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	2 cut(s)	26, 922
BstYI	RGATCY	1 cut(s)	99
BstZ17I	GTATAC	1 cut(s)	1020
Bsu15I	ATCGAT	1 cut(s)	561
BsuTUI	ATCGAT	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	896
BtsIMutI	CAGTG	1 cut(s)	936
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	82, 912
ClaI	ATCGAT	1 cut(s)	561
CseI	GACGC	2 cut(s)	421, 793
Csp6I	GTAC	2 cut(s)	38, 861
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	2 cut(s)	207, 354
CviJI	RGCY	9 cut(s)	61, 142, 231, 331, 363, 603, 708, 720, 897
CviKI_1	RGCY	9 cut(s)	61, 142, 231, 331, 363, 603, 708, 720, 897
CviQI	GTAC	2 cut(s)	38, 861
DpnI	GATC	2 cut(s)	101, 942
DpnII	GATC	2 cut(s)	99, 940
DraI	TTTAAA	1 cut(s)	795
DrdI	GACNNNNNNGTC	2 cut(s)	445, 821
DseDI	GACNNNNNNGTC	2 cut(s)	445, 821
Eam1104I	CTCTTC	3 cut(s)	651, 969, 1024
EarI	CTCTTC	3 cut(s)	651, 969, 1024
EciI	GGCGGA	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	233, 722
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	82, 912
Eco57I	CTGAAG	1 cut(s)	995
EcoNI	CCTNNNNNAGG	1 cut(s)	1029
EcoRII	CCWGG	2 cut(s)	386, 1024
EcoT38I	GRGCYC	2 cut(s)	233, 722
FaeI	CATG	2 cut(s)	210, 357
FalI	AAGNNNNNCTT	3 cut(s)	257, 289, 1021
FatI	CATG	2 cut(s)	206, 353
FauI	CCCGC	1 cut(s)	662
FblI	GTMKAC	3 cut(s)	258, 1006, 1019
Fnu4HI	GCNGC	2 cut(s)	238, 934
FriOI	GRGCYC	2 cut(s)	233, 722
Fsp4HI	GCNGC	2 cut(s)	238, 934
FspBI	CTAG	2 cut(s)	35, 180
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	238, 934
GsuI	CTGGAG	2 cut(s)	247, 599
HaeII	RGCGCY	1 cut(s)	163
HapII	CCGG	2 cut(s)	80, 441
HgaI	GACGC	2 cut(s)	421, 793
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	210, 357
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	446, 595, 822, 905
HpaII	CCGG	2 cut(s)	80, 441
HphI	GGTGA	2 cut(s)	455, 488
Hpy166II	GTNNAC	5 cut(s)	249, 259, 479, 1007, 1020
Hpy188I	TCNGA	1 cut(s)	821
Hpy188III	TCNNGA	7 cut(s)	180, 195, 265, 281, 761, 826, 1038
Hpy8I	GTNNAC	5 cut(s)	249, 259, 479, 1007, 1020
HpyAV	CCTTC	3 cut(s)	77, 789, 880
HpyCH4III	ACNGT	1 cut(s)	850
HpyCH4IV	ACGT	2 cut(s)	661, 1003
HpyCH4V	TGCA	4 cut(s)	108, 150, 240, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpySE526I	ACGT	2 cut(s)	661, 1003
Hsp92II	CATG	2 cut(s)	210, 357
HspAI	GCGC	1 cut(s)	160
KpnI	GGTACC	1 cut(s)	864
Kzo9I	GATC	2 cut(s)	99, 940
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	35, 180
MaeII	ACGT	2 cut(s)	661, 1003
MaeIII	GTNAC	5 cut(s)	164, 337, 765, 805, 844
MalI	GATC	2 cut(s)	101, 942
MboI	GATC	2 cut(s)	99, 940
MboII	GAAGA	5 cut(s)	62, 638, 683, 986, 1041
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	233, 722
MluCI	AATT	5 cut(s)	74, 276, 379, 628, 729
MluI	ACGCGT	1 cut(s)	413
MlyI	GAGTC	4 cut(s)	455, 589, 831, 914
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	9 cut(s)	227, 272, 574, 709, 741, 827, 848, 970, 1025
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	3 cut(s)	275, 788, 794
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	2 cut(s)	80, 441
MspR9I	CCNGG	2 cut(s)	388, 1026
MvaI	CCWGG	2 cut(s)	388, 1026
MvnI	CGCG	2 cut(s)	415, 669
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	2 cut(s)	99, 940
NlaIII	CATG	2 cut(s)	210, 357
NlaIV	GGNNCC	2 cut(s)	230, 862
NmuCI	GTSAC	1 cut(s)	805
NspI	RCATGY	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	756
PfoI	TCCNGGA	1 cut(s)	1024
PinAI	ACCGGT	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	239, 935
PleI	GAGTC	4 cut(s)	454, 589, 830, 913
PpsI	GAGTC	4 cut(s)	454, 589, 830, 913
Psp6I	CCWGG	2 cut(s)	386, 1024
PspGI	CCWGG	2 cut(s)	386, 1024
PspN4I	GGNNCC	2 cut(s)	230, 862
PspPI	GGNCC	2 cut(s)	82, 912
PstI	CTGCAG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	2 cut(s)	39, 862
RsaNI	GTAC	2 cut(s)	38, 861
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	275, 788, 794
SatI	GCNGC	2 cut(s)	238, 934
Sau3AI	GATC	2 cut(s)	99, 940
Sau96I	GGNCC	2 cut(s)	82, 912
SchI	GAGTC	4 cut(s)	455, 589, 831, 914
ScrFI	CCNGG	2 cut(s)	388, 1026
SduI	GDGCHC	2 cut(s)	233, 722
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	2 cut(s)	82, 912
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	5 cut(s)	74, 276, 379, 628, 729
SsiI	CCGC	4 cut(s)	30, 95, 669, 933
SspMI	CTAG	2 cut(s)	35, 180
StyD4I	CCNGG	2 cut(s)	386, 1024
TaaI	ACNGT	1 cut(s)	850
TaiI	ACGT	2 cut(s)	664, 1006
TaqI	TCGA	1 cut(s)	561
TasI	AATT	5 cut(s)	74, 276, 379, 628, 729
TauI	GCSGC	1 cut(s)	936
Tru1I	TTAA	3 cut(s)	275, 788, 794
Tru9I	TTAA	3 cut(s)	275, 788, 794
TscAI	CASTG	1 cut(s)	943
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	5 cut(s)	308, 342, 579, 683, 899
TspRI	CASTG	1 cut(s)	943
VpaK11BI	GGWCC	2 cut(s)	82, 912
XagI	CCTNNNNNAGG	1 cut(s)	1029
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	210
XmiI	GTMKAC	3 cut(s)	258, 1006, 1019
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	2 cut(s)	35, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.