RchiOBHm_Chr5g0040991

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016793
Physical Location & Seq
Reverse (-)
35632686 .. 35633775
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGAAGAACTGTGAAAAATCTCAAATCCTAATGCTTTCTCTGATAGCTATTCTTCTCATCGTCACACCTCTTTTATCCTCGTCAGTAAGAACTACCTATCTCTACATCATCACTAACCTCCTCATCATTGCCCTCGGAGCACAGGCTGGTGTTCTCAGAGCCTTTTCCAAGCCTATAGATCATGAGAAGAAGAACCCAGTTTCTGTTCCTCAAAAACCTGTGTTGGCGGTGCCCTCAGAATTAGCCTCTACTGAGAAAAGGGTTGCTGGCCAAAATGATGAAGATCAAAGGGTTGCTTCGGAATGTTCCGAAAAGAATGGTGCTAATAAGGTTGTTGCAAAAAGCAAGTCTCAGAAGGTTACTGGCACTGTGAAAATGGAGACCGTGAAGAAGTGTCCTTCCATGCCTAGCCTTTTCTTCATAGGTGGTGGTGAGGCTGAGACTGAAGGAGCTCATAATGATGATGATGAAGTTGAGGACTTCTATCAACTAGAGGAGGATGAAGATGTAGCAGATCTTAGTGGTCAAGAGCTTTTAATCAAAGCTGAGACCTTCATCGGGAACTTCTACAAGCAGTTGAAGATGCAGAGGGAAGAATCATGGAAAAGGATTCATGGGATTTATCACAAAGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

212

Amino Acids

23.52

Weight (kDa)

5.67

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 181 - 209 1.3e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 558
AgsI TTSAA 1 cut(s) 580
AluBI AGCT 4 cut(s) 47, 452, 532, 545
AluI AGCT 4 cut(s) 47, 452, 532, 545
Alw21I GWGCWC 2 cut(s) 142, 454
Alw26I GTCTC 4 cut(s) 354, 374, 434, 542
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AsuHPI GGTGA 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 270
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 454
Bbv12I GWGCWC 2 cut(s) 142, 454
BcoDI GTCTC 4 cut(s) 354, 374, 434, 542
BfaI CTAG 2 cut(s) 408, 491
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 573
BmuI ACTGGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 2 cut(s) 374, 542
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 558
Bse1I ACTGG 2 cut(s) 197, 367
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 558
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 6 cut(s) 169, 243, 249, 365, 429, 537
BseNI ACTGG 2 cut(s) 197, 367
BseRI GAGGAG 2 cut(s) 110, 509
BseSI GKGCMC 1 cut(s) 234
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 142, 454
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 4 cut(s) 354, 374, 434, 542
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 2 cut(s) 374, 542
Bsp1286I GDGCHC 3 cut(s) 142, 234, 454
Bsp143I GATC 3 cut(s) 178, 283, 514
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 6 cut(s) 168, 244, 248, 364, 430, 538
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BspTNI GGTCTC 2 cut(s) 374, 542
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 2 cut(s) 197, 367
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 178, 283, 514
Bst4CI ACNGT 3 cut(s) 11, 370, 385
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 7 cut(s) 155, 235, 252, 351, 438, 518, 546
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 3 cut(s) 181, 286, 517
BstMAI GTCTC 4 cut(s) 354, 374, 434, 542
BstMBI GATC 3 cut(s) 178, 283, 514
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 181
CviAII CATG 4 cut(s) 182, 403, 600, 614
DdeI CTNAG 7 cut(s) 155, 235, 252, 351, 438, 518, 546
DpnI GATC 3 cut(s) 180, 285, 516
DpnII GATC 3 cut(s) 178, 283, 514
EaeI YGGCCR 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 454
Eco31I GGTCTC 2 cut(s) 374, 542
Eco53kI GAGCTC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 454
FaeI CATG 4 cut(s) 185, 406, 603, 617
FaiI YATR 7 cut(s) 176, 183, 404, 422, 456, 601, 615
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 4 cut(s) 181, 402, 599, 613
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 454
FspBI CTAG 2 cut(s) 408, 491
HaeIII GGCC 1 cut(s) 270
Hin1II CATG 4 cut(s) 185, 406, 603, 617
HinfI GANTC 2 cut(s) 596, 610
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 7 cut(s) 42, 137, 158, 238, 301, 310, 354
Hpy188III TCNNGA 3 cut(s) 182, 527, 559
HpyAV CCTTC 4 cut(s) 349, 408, 440, 562
HpyCH4III ACNGT 3 cut(s) 11, 370, 385
HpyCH4V TGCA 2 cut(s) 338, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 7 cut(s) 155, 235, 252, 351, 438, 518, 546
Hsp92II CATG 4 cut(s) 185, 406, 603, 617
Kzo9I GATC 3 cut(s) 178, 283, 514
LmnI GCTCC 2 cut(s) 137, 449
LpnPI CCDG 6 cut(s) 128, 132, 210, 231, 252, 348
LweI GCATC 1 cut(s) 573
MaeI CTAG 2 cut(s) 408, 491
MaeIII GTNAC 2 cut(s) 61, 358
MalI GATC 3 cut(s) 180, 285, 516
MboI GATC 3 cut(s) 178, 283, 514
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 3 cut(s) 142, 234, 454
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 1 cut(s) 239
MluNI TGGCCA 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 3 cut(s) 178, 283, 514
NlaIII CATG 4 cut(s) 185, 406, 603, 617
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 2 cut(s) 596, 610
Psp124BI GAGCTC 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 454
SaqAI TTAA 1 cut(s) 536
Sau3AI GATC 3 cut(s) 178, 283, 514
SduI GDGCHC 3 cut(s) 142, 234, 454
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 1 cut(s) 239
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 408, 491
SstI GAGCTC 1 cut(s) 454
TaaI ACNGT 3 cut(s) 11, 370, 385
TasI AATT 1 cut(s) 239
TfiI GAWTC 2 cut(s) 596, 610
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 7 cut(s) 17, 294, 409, 483, 516, 544, 602
TspRI CASTG 1 cut(s) 373
XspI CTAG 2 cut(s) 408, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.