RchiOBHm_Chr5g0042721
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
37533676 .. 37534065
390 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGTGTTTATGGGAAAGATTGAGGGGCAAGGTGAGAAAGGTTTCAGGTTCGGGTGACATTGGTGGTGCAAAGGAGCCTCTTCTTCATGGAGTGCATAAAAATTCACAAAATTATTCTTTTCTTCTCGCAATACTCACATTTTTATTCTCAGCTCTTGAAGGACTAGTATATGGCTATGATATTGGTGCCACAGCTTGTGCTAGAATTTCCCTAGAGTCAGCCACAAGTATCATAGTATGA

Protein Analysis

79

Amino Acids

8.51

Weight (kDa)

8.71

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019021)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AcsI RAATTY 2 cut(s) 100, 204
AgsI TTSAA 1 cut(s) 158
AhlI ACTAGT 1 cut(s) 163
AluBI AGCT 2 cut(s) 152, 194
AluI AGCT 2 cut(s) 152, 194
ApoI RAATTY 2 cut(s) 100, 204
Asp700I GAANNNNTTC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 43, 65
BanI GGYRCC 1 cut(s) 185
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 3 cut(s) 164, 201, 212
BmiI GGNNCC 2 cut(s) 75, 187
BseMII CTCAG 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 75, 187
BspT107I GGYRCC 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 148
CviAII CATG 1 cut(s) 86
CviJI RGCY 5 cut(s) 76, 152, 174, 194, 221
CviKI_1 RGCY 5 cut(s) 76, 152, 174, 194, 221
DdeI CTNAG 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
FaeI CATG 1 cut(s) 89
FaiI YATR 8 cut(s) 10, 87, 96, 169, 171, 177, 233, 238
FatI CATG 1 cut(s) 85
FspBI CTAG 3 cut(s) 164, 201, 212
Hin1II CATG 1 cut(s) 89
HinfI GANTC 1 cut(s) 215
HphI GGTGA 2 cut(s) 43, 65
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 68, 94
HpyF3I CTNAG 1 cut(s) 148
Hsp92II CATG 1 cut(s) 89
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 1 cut(s) 30
MaeI CTAG 3 cut(s) 164, 201, 212
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 3 cut(s) 71, 74, 113
MluCI AATT 3 cut(s) 100, 109, 204
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 2 cut(s) 15, 87
MroXI GAANNNNTTC 1 cut(s) 40
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 75, 187
NmuCI GTSAC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 40
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 75, 187
SchI GAGTC 1 cut(s) 224
SetI ASST 5 cut(s) 33, 42, 49, 154, 196
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 3 cut(s) 100, 109, 204
SspMI CTAG 3 cut(s) 164, 201, 212
TasI AATT 3 cut(s) 100, 109, 204
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 74
XapI RAATTY 2 cut(s) 100, 204
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 3 cut(s) 164, 201, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.