Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0019021

Physical Location & Seq

Genomic Coordinates Reverse (-)

23674877 .. 23685102

Gene Structure 10226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGTTTCAAATGCTTCCTGTTATGGGAAAGATTGAGGGGCAAGGTGAGAAAGGTTTCAGGTTCCGGTGACATTGGTGATGCAAAGGAGCCTCTTCTTCATGGAGTGCATAAAAATTCACAAAACTATTCTTTTCTTCTCGCAATACTCACATTTTTATTCCCAGCTCTTGAAGGACTAGTATATGGCTATGATATTGGTGCCACAGCTTGTGCTAGAATTTCCCTAGAGTCAGCCACATTAGCGGAGTATCATAGTATGACCTTGTCATCTCTGCAAATTGGTCTCATAACTAGTGGCTCATTATCTGGTGCCTTGATTGGCTCTTTGTTGGTCTTCAACGCTGAGTTGATTTCGGCTGCTGTATTGTATTCTTTTGGAGCTCCAATAACGGCATTAGCACCTTACTTCCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

139

Amino Acids

14.83

Weight (kDa)

6.81

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042721 RchiOBHm_Chr5g0042731 RchiOBHm_Chr6g0266551 RchiOBHm_Chr7g0224051
rosa_laevigata	RLG00000017810
rosa_multiflora	Rmu_sc0036443.1_g000002
rosa_samantha	Rh6BG146900 Rh6DG131500 Rh7BG356500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	200, 311
AciI	CCGC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	115, 219
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	10, 173, 340
AhlI	ACTAGT	2 cut(s)	178, 293
AluBI	AGCT	3 cut(s)	167, 209, 383
AluI	AGCT	3 cut(s)	167, 209, 383
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	115, 219
Asp700I	GAANNNNTTC	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	58, 80, 89
BanI	GGYRCC	2 cut(s)	200, 311
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	290
BcuI	ACTAGT	2 cut(s)	178, 293
BfaI	CTAG	4 cut(s)	179, 216, 227, 294
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmiI	GGNNCC	4 cut(s)	64, 90, 202, 313
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	163
BshNI	GGYRCC	2 cut(s)	200, 311
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	385
BspACI	CCGC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	4 cut(s)	64, 90, 202, 313
BspT107I	GGYRCC	2 cut(s)	200, 311
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	9 cut(s)	91, 167, 189, 209, 236, 300, 324, 359, 383
CviKI_1	RGCY	9 cut(s)	91, 167, 189, 209, 236, 300, 324, 359, 383
DdeI	CTNAG	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	385
FaeI	CATG	1 cut(s)	104
FaiI	YATR	9 cut(s)	25, 102, 111, 184, 186, 192, 255, 260, 290
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	360
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	4 cut(s)	179, 216, 227, 294
GluI	GCNGC	1 cut(s)	360
GsaI	CCCAGC	1 cut(s)	167
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	3 cut(s)	58, 80, 89
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	83, 109, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	104
LmnI	GCTCC	3 cut(s)	88, 380, 388
LpnPI	CCDG	5 cut(s)	32, 45, 79, 177, 294
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	4 cut(s)	179, 216, 227, 294
MaeIII	GTNAC	1 cut(s)	68
MboII	GAAGA	4 cut(s)	86, 89, 128, 328
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	3 cut(s)	115, 219, 279
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	30, 102
MroXI	GAANNNNTTC	1 cut(s)	55
MspI	CCGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	4 cut(s)	64, 90, 202, 313
NmuCI	GTSAC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	4 cut(s)	64, 90, 202, 313
PsyI	GACNNNGTC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	385
SatI	GCNGC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	8 cut(s)	48, 57, 64, 169, 211, 266, 385, 406
SfaNI	GCATC	1 cut(s)	70
SpeI	ACTAGT	2 cut(s)	178, 293
Sse9I	AATT	3 cut(s)	115, 219, 279
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	4 cut(s)	179, 216, 227, 294
SstI	GAGCTC	1 cut(s)	385
TasI	AATT	3 cut(s)	115, 219, 279
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	89
Tth111I	GACNNNGTC	1 cut(s)	265
XapI	RAATTY	2 cut(s)	115, 219
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	4 cut(s)	179, 216, 227, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.