Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019021

Physical Location & Seq

Genomic Coordinates Reverse (-)

18731843 .. 18738846

Gene Structure 7004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG131500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAGTTGGGTGTCCGAGCCTTCCAGGCTTTTGAGATAGAAATCACTCATATTGAAGTGGAGACTTATTATATGACCATGAAGCAGCTAATGTTTAGTGATGATGTTGATCTCCATCCTGTAGTTGCCTTATGGGAAAGATTGAGGGGCAAGGTGAGAAAGGTTTCAGGTTCCGGTGACATTGGTGATGCAAAGGAGCCTCTTCTTCATGGAGTGCATAAAAATTCACAAAACTATTCTTTTCTTCTCGCAATACTCACATTTTTATTCCCAGCTCTTGAAGGACTAGTATATGGCTATGATATTGGTGCCACAGCTTGTGCTAGAATTTCCCTAGAGTCAGCCACATTAGCGGAGTATCATAGTATGACCTTGTCATCTCTGCAAATTGGTCTCATAACTAGTGGCTCATTATCTGGTGCCTTGATTGGCTCTTTGTTGGTCTTCAACGCTGAGTTGATTTCGGCTGCTGTATTGTATTCTTTTGGAGCTCCAATAACGGCATTAGCACCTTACTTCCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

175

Amino Acids

19.01

Weight (kDa)

5.45

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042721 RchiOBHm_Chr5g0042731 RchiOBHm_Chr6g0266551 RchiOBHm_Chr7g0224051
rosa_laevigata	RLG00000017810
rosa_multiflora	Rmu_sc0036443.1_g000002
rosa_samantha	Rh6BG146900 Rh6DG131500 Rh7BG356500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	308, 419
AciI	CCGC	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	223, 327
AgsI	TTSAA	3 cut(s)	56, 281, 448
AhlI	ACTAGT	2 cut(s)	286, 401
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	88, 275, 317, 491
AluI	AGCT	4 cut(s)	88, 275, 317, 491
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	2 cut(s)	56, 398
ApeKI	GCWGC	2 cut(s)	85, 467
ApoI	RAATTY	2 cut(s)	223, 327
Asp700I	GAANNNNTTC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	166, 188, 197
BanI	GGYRCC	2 cut(s)	308, 419
BanII	GRGCYC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	97, 454
BccI	CCATC	1 cut(s)	123
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	56, 398
BcuI	ACTAGT	2 cut(s)	286, 401
BfaI	CTAG	4 cut(s)	287, 324, 335, 402
BfmI	CTRYAG	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	86, 468
BlsI	GCNGC	2 cut(s)	87, 469
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	4 cut(s)	172, 198, 310, 421
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	436
BsaBI	GATNNNNATC	3 cut(s)	41, 108, 114
BsaI	GGTCTC	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	521
Bse8I	GATNNNNATC	3 cut(s)	41, 108, 114
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	3 cut(s)	41, 108, 114
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	521
BseXI	GCAGC	2 cut(s)	97, 454
BseYI	CCCAGC	1 cut(s)	271
BshNI	GGYRCC	2 cut(s)	308, 419
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	56, 398
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	4 cut(s)	172, 198, 310, 421
BspT107I	GGYRCC	2 cut(s)	308, 419
BspTNI	GGTCTC	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	521
BssMI	GATC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	56, 398
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 350
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	97, 454
BstV2I	GAAGAC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	115
CviAII	CATG	2 cut(s)	79, 209
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	493
FaeI	CATG	2 cut(s)	82, 212
FatI	CATG	2 cut(s)	78, 208
Fnu4HI	GCNGC	2 cut(s)	86, 468
FokI	GGATG	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	2 cut(s)	86, 468
FspBI	CTAG	4 cut(s)	287, 324, 335, 402
GluI	GCNGC	2 cut(s)	86, 468
GsaI	CCCAGC	1 cut(s)	275
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	2 cut(s)	82, 212
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	3 cut(s)	166, 188, 197
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	31, 275
HpyCH4V	TGCA	3 cut(s)	191, 217, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 350
HpyF3I	CTNAG	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	82, 212
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	3 cut(s)	196, 488, 496
LpnPI	CCDG	7 cut(s)	11, 38, 132, 153, 187, 285, 402
Lsp1109I	GCAGC	2 cut(s)	97, 454
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	4 cut(s)	287, 324, 335, 402
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	4 cut(s)	194, 197, 236, 436
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	3 cut(s)	223, 327, 387
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	2 cut(s)	138, 210
MroXI	GAANNNNTTC	1 cut(s)	163
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	26, 350
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	82, 212
NlaIV	GGNNCC	4 cut(s)	172, 198, 310, 421
NmuCI	GTSAC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	87, 469
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	172, 198, 310, 421
PsyI	GACNNNGTC	1 cut(s)	373
SacI	GAGCTC	1 cut(s)	493
SatI	GCNGC	2 cut(s)	86, 468
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	9 cut(s)	90, 156, 165, 172, 277, 319, 374, 493, 514
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	120
SpeI	ACTAGT	2 cut(s)	286, 401
Sse9I	AATT	3 cut(s)	223, 327, 387
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	4 cut(s)	287, 324, 335, 402
SstI	GAGCTC	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	24
TasI	AATT	3 cut(s)	223, 327, 387
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	85, 467
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	17, 95, 197
Tth111I	GACNNNGTC	1 cut(s)	373
XapI	RAATTY	2 cut(s)	223, 327
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	4 cut(s)	287, 324, 335, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.