RLG00000017810
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
21602037 .. 21603652
1616 bp
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UTR
Exon/CDS
Intron
RLM00000017810

Sequence Viewer

Length: 384 bp
ATGAGAGTCGGAGACGGAATCAGAAGACGAAACGGCATCGTCTGCACCATTTGGAGGGAATCGAATCTCTCTCGTCCTATTCAATCAAACTACGAAATGCTGAGGAAAGGTCTTGGAGGCTCCGGCATCGGCCTTAGACTCGAAGTGTTATGGGAAAGGTTAAGGGGCAAGGTGAGAAAGGTTTCAGGTTCGGGTGACATTGGTGGTGCAAAGGAGCCTCTTCTTCATGGAGTGCATAAAAATTCACAAAACTATTCTTTTCTTCTCGCAATACTCCCATTTTTATTCCCAGCTCTTGAAGGACTTGTATATGGCTATGATATTGGTGCCACAGCTTGTGCTACAATTTCCCTAGAGTCAGCCACATTAAGTGGAGTATCATAG

Protein Analysis

128

Amino Acids

13.76

Weight (kDa)

9.75

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019021)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 2 cut(s) 83, 299
AluBI AGCT 2 cut(s) 293, 335
AluI AGCT 2 cut(s) 293, 335
Alw26I GTCTC 1 cut(s) 6
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 184, 206
BanI GGYRCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 1 cut(s) 353
BmiI GGNNCC 3 cut(s) 121, 216, 328
BmsI GCATC 2 cut(s) 45, 135
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 6
BsmBI CGTCTC 1 cut(s) 6
BsnI GGCC 1 cut(s) 132
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 121, 216, 328
BspT107I GGYRCC 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 101, 134
BstMAI GTCTC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 132
CviAII CATG 1 cut(s) 227
CviJI RGCY 7 cut(s) 120, 132, 217, 293, 315, 335, 362
CviKI_1 RGCY 7 cut(s) 120, 132, 217, 293, 315, 335, 362
DdeI CTNAG 2 cut(s) 101, 134
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 1 cut(s) 230
FaiI YATR 7 cut(s) 151, 228, 237, 310, 312, 318, 382
FatI CATG 1 cut(s) 226
FspBI CTAG 1 cut(s) 353
GsaI CCCAGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 123
Hin1II CATG 1 cut(s) 230
HinfI GANTC 6 cut(s) 6, 18, 59, 64, 138, 356
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 184, 206
Hpy188I TCNGA 2 cut(s) 11, 23
Hpy188III TCNNGA 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 45, 209, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 2 cut(s) 101, 134
Hsp92II CATG 1 cut(s) 230
LmnI GCTCC 2 cut(s) 125, 214
LpnPI CCDG 3 cut(s) 136, 171, 303
LweI GCATC 2 cut(s) 45, 135
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 4 cut(s) 36, 212, 215, 254
MluCI AATT 2 cut(s) 241, 345
MlyI GAGTC 3 cut(s) 15, 132, 365
MnlI CCTC 4 cut(s) 48, 96, 110, 228
MroXI GAANNNNTTC 1 cut(s) 181
MseI TTAA 2 cut(s) 161, 368
MspI CCGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 42
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 3 cut(s) 121, 216, 328
NmuCI GTSAC 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 181
PfeI GAWTC 3 cut(s) 18, 59, 64
PleI GAGTC 3 cut(s) 14, 132, 364
PpsI GAGTC 3 cut(s) 14, 132, 364
PspFI CCCAGC 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 121, 216, 328
SaqAI TTAA 2 cut(s) 161, 368
SchI GAGTC 3 cut(s) 15, 132, 365
SetI ASST 7 cut(s) 112, 161, 174, 183, 190, 295, 337
SfaNI GCATC 2 cut(s) 45, 135
Sse9I AATT 2 cut(s) 241, 345
SspMI CTAG 1 cut(s) 353
TaqI TCGA 2 cut(s) 62, 141
TasI AATT 2 cut(s) 241, 345
TfiI GAWTC 3 cut(s) 18, 59, 64
Tru1I TTAA 2 cut(s) 161, 368
Tru9I TTAA 2 cut(s) 161, 368
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 30
XapI RAATTY 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.