Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019021

Physical Location & Seq

Genomic Coordinates Reverse (-)

23083666 .. 23084425

Gene Structure 760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTGTTTATGGGAAAGATTGAGGGGCAAGGTGAGAAAGGTTTCAGGTTCGGGTGACATTGGTGATGCAAAGGAGCCTCTTCTTCATGGAGCGCATAAAAATTCACAAAACTATTCTTTTCTTCTCGCAATACTCACATTTTTATTCCCAGCTCTTGAAGGACTAGTATATGGCTATGATATTGGTGCCACAGCTTGTGCTAGAATTTCCCTAGAGTCAGCCACATTAAGCGGAGTATCATATTTGATTGGGCTTCTTGTATTTGGTACAGGGATTGGACTGGCAATGCATGCTGCTCCTATGTATATGGCTGAGACAGCTCCAAGTCAGATACGAGGTCAACTATTATCTCTCGAGGAGTTGTTTATAGTGATTGGGATGGTTGTTTTGTTATGCAGTTGGTATTTAGCGGACGTATTTGGTGGTTGGCGGTATATGTATGGACCTAGCATCCCTTTGGTAGTAATTATGGGAATTGGAATGTGGTGGTTACCGGAATCACCTAGATGGATCCTTCTACCATACGGGGAAAAGGAAACAGGCATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

183

Amino Acids

20.08

Weight (kDa)

5.89

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	81 - 173	8.5e-19	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042721 RchiOBHm_Chr5g0042731 RchiOBHm_Chr6g0266551 RchiOBHm_Chr7g0224051
rosa_laevigata	RLG00000017810
rosa_multiflora	Rmu_sc0036443.1_g000002
rosa_samantha	Rh6BG146900 Rh6DG131500 Rh7BG356500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	3 cut(s)	231, 410, 430
AclWI	GGATC	2 cut(s)	505, 518
AcsI	RAATTY	2 cut(s)	100, 204
AfaI	GTAC	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	158
AhlI	ACTAGT	1 cut(s)	163
AluBI	AGCT	3 cut(s)	152, 194, 320
AluI	AGCT	3 cut(s)	152, 194, 320
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	505, 518
Ama87I	CYCGRG	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	100, 204
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	43, 65, 74, 492
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	443
BamHI	GGATCC	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	373, 501
BcoDI	GTCTC	1 cut(s)	308
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	5 cut(s)	164, 201, 212, 447, 504
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	75, 187, 512
BmsI	GCATC	2 cut(s)	55, 459
BsaWI	WCCGGW	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	384, 450
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	510
BspACI	CCGC	3 cut(s)	231, 410, 430
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	75, 187, 512
BspPI	GGATC	2 cut(s)	505, 518
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	384, 450
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	513
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	510
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 317
BstNSI	RCATGY	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	384, 450
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	3 cut(s)	86, 290, 544
CviJI	RGCY	8 cut(s)	76, 152, 174, 194, 221, 253, 311, 320
CviKI_1	RGCY	8 cut(s)	76, 152, 174, 194, 221, 253, 311, 320
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	512
DpnII	GATC	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	489
EcoO65I	GGTNACC	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	291
FaeI	CATG	3 cut(s)	89, 293, 547
FatI	CATG	3 cut(s)	85, 289, 543
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	2 cut(s)	391, 437
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	5 cut(s)	164, 201, 212, 447, 504
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	152
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	89, 293, 547
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	215, 497
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	4 cut(s)	43, 65, 74, 492
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	2 cut(s)	155, 353
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	152, 524
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	3 cut(s)	68, 289, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 317
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	3 cut(s)	89, 293, 547
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	510
LmnI	GCTCC	4 cut(s)	73, 89, 301, 325
LpnPI	CCDG	6 cut(s)	30, 162, 255, 266, 507, 525
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	55, 459
MaeI	CTAG	5 cut(s)	164, 201, 212, 447, 504
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	53, 489
MalI	GATC	1 cut(s)	512
MboI	GATC	1 cut(s)	510
MboII	GAAGA	3 cut(s)	71, 74, 113
MflI	RGATCY	1 cut(s)	510
MluCI	AATT	4 cut(s)	100, 204, 465, 474
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	15, 87, 329, 349
Mph1103I	ATGCAT	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	505
MspI	CCGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	290, 317
NdeII	GATC	1 cut(s)	510
NlaIII	CATG	3 cut(s)	89, 293, 547
NlaIV	GGNNCC	3 cut(s)	75, 187, 512
NmuCI	GTSAC	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspEI	GGTNACC	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	75, 187, 512
PspPI	GGNCC	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	510
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	510
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	55, 459
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	163
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	4 cut(s)	100, 204, 465, 474
SsiI	CCGC	3 cut(s)	231, 410, 430
SspMI	CTAG	5 cut(s)	164, 201, 212, 447, 504
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	1 cut(s)	354
TasI	AATT	4 cut(s)	100, 204, 465, 474
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	2 cut(s)	100, 204
XceI	RCATGY	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	5 cut(s)	164, 201, 212, 447, 504
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.