Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019021

Physical Location & Seq

Genomic Coordinates Forward (+)

37534152 .. 37534529

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTGAGACAGCTCCAAGTCAAATACGAGGTCAACTATTATCTCTGGAGGAGTTCTTTATAGTGTTTGGGATGGTTGTTTTGTTATGCAGTTGGTATTTAGCGGACGTATTTGGTGGTTGGCGGTATATGTATGGACCTAGCATCCATTTGGCAGTAATTATGGGAATTCGAATGTGGTGGTTACCGGAATCACCTAGATGGATCCTTCTACCATACGGGGGCAAGGAAACAGGCATGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

81

Amino Acids

9.33

Weight (kDa)

5.63

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 70	9.6e-14	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042721 RchiOBHm_Chr5g0042731 RchiOBHm_Chr6g0266551 RchiOBHm_Chr7g0224051
rosa_laevigata	RLG00000017810
rosa_multiflora	Rmu_sc0036443.1_g000002
rosa_samantha	Rh6BG146900 Rh6DG131500 Rh7BG356500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 124
AclWI	GGATC	2 cut(s)	199, 212
AcsI	RAATTY	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	199, 212
ApoI	RAATTY	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	186
AsuII	TTCGAA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	204
BccI	CCATC	2 cut(s)	67, 195
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	3 cut(s)	141, 198, 244
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	78, 144
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	2
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	204, 240
BspACI	CCGC	2 cut(s)	104, 124
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	2 cut(s)	199, 212
BspT104I	TTCGAA	1 cut(s)	172
BssMI	GATC	2 cut(s)	204, 240
BstBI	TTCGAA	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	78, 144
BstKTI	GATC	2 cut(s)	207, 243
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	204, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	78, 144
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	2 cut(s)	5, 14
CviKI_1	RGCY	2 cut(s)	5, 14
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	206, 242
DpnII	GATC	2 cut(s)	204, 240
Eco47I	GGWCC	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	183
EcoO65I	GGTNACC	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	168
FaeI	CATG	1 cut(s)	241
FaiI	YATR	8 cut(s)	62, 88, 129, 131, 135, 164, 217, 239
FatI	CATG	1 cut(s)	237
FokI	GGATG	2 cut(s)	85, 131
FspBI	CTAG	3 cut(s)	141, 198, 244
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	204, 240
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	3 cut(s)	32, 201, 219
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	3 cut(s)	141, 198, 244
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	206, 242
MboI	GATC	2 cut(s)	204, 240
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	2 cut(s)	159, 168
MnlI	CCTC	2 cut(s)	23, 43
MslI	CAYNNNNRTG	1 cut(s)	199
MspI	CCGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	204, 240
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	204, 240
Sau96I	GGNCC	1 cut(s)	137
SetI	ASST	5 cut(s)	16, 34, 111, 142, 199
SfaNI	GCATC	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	172
SgeI	CNNG	8 cut(s)	30, 41, 59, 153, 200, 210, 232, 238
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	159, 168
SsiI	CCGC	2 cut(s)	104, 124
SspMI	CTAG	3 cut(s)	141, 198, 244
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	159, 168
TfiI	GAWTC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	168
XspI	CTAG	3 cut(s)	141, 198, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.