Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036443.1

Orthogroup ID

OG0019021

Physical Location & Seq

Genomic Coordinates Reverse (-)

817 .. 1749

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036443.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atggcctccgatcctgagcaaccggcgcgctctcctctccgacaggtccatacttcagaggatgttcagatgcctcttcttaatgggggccaattatcagacaactattctgttcttgctgcagtactcccatttctattcccagctcttggaggactactgtatggctatgatattggtgccacgtcttgtgctacaatatccatagaggtatacatacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

74

Amino Acids

7.92

Weight (kDa)

4.37

Isoelectric Point (pI)

70.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042721 RchiOBHm_Chr5g0042731 RchiOBHm_Chr6g0266551 RchiOBHm_Chr7g0224051
rosa_laevigata	RLG00000017810
rosa_multiflora	Rmu_sc0036443.1_g000002
rosa_samantha	Rh6BG146900 Rh6DG131500 Rh7BG356500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	28
AclWI	GGATC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	149
AjiI	CACGTC	1 cut(s)	186
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	1 cut(s)	5
AoxI	GGCC	2 cut(s)	3, 88
ApeKI	GCWGC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	28, 30
AspS9I	GGNCC	2 cut(s)	46, 88
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	46, 88
BmiI	GGNNCC	2 cut(s)	89, 181
BmsI	GCATC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	22
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	6
BsePI	GCGCGC	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	5, 90
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	149
BsnI	GGCC	2 cut(s)	5, 90
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	5, 90
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	89, 181
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssHII	GCGCGC	1 cut(s)	26
BssMI	GATC	1 cut(s)	10
BssNAI	GTATAC	1 cut(s)	214
Bst1107I	GTATAC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	28, 30
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	106
BstZ17I	GTATAC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	5, 90
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	28, 30
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	46, 88
Csp6I	GTAC	1 cut(s)	125
CviJI	RGCY	4 cut(s)	5, 90, 146, 168
CviKI_1	RGCY	4 cut(s)	5, 90, 146, 168
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	39
FaiI	YATR	6 cut(s)	51, 165, 171, 206, 214, 218
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	223
GlaI	GCGC	2 cut(s)	27, 29
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	5, 90
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	28, 30
Hin6I	GCGC	2 cut(s)	26, 28
HinP1I	GCGC	2 cut(s)	26, 28
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	5 cut(s)	10, 41, 58, 69, 100
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	185
HspAI	GCGC	2 cut(s)	26, 28
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	27, 29, 36, 156
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	223
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	68
MluCI	AATT	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	16, 45, 52, 84, 146, 202
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	1 cut(s)	10
NlaIV	GGNNCC	2 cut(s)	89, 181
PauI	GCGCGC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	89, 181
PspPI	GGNCC	2 cut(s)	46, 88
PstI	CTGCAG	1 cut(s)	124
PteI	GCGCGC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	46, 88
ScaI	AGTACT	1 cut(s)	126
SetI	ASST	4 cut(s)	48, 148, 188, 213
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	120
SgeI	CNNG	9 cut(s)	26, 35, 39, 56, 128, 155, 161, 196, 201
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	1 cut(s)	92
SspMI	CTAG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	188
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	223
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.