Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018283

Physical Location & Seq

Genomic Coordinates Forward (+)

37819217 .. 37820071

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACAACTGGCGATGCTACCACATTGAACCTGTTGCTGGAGAAGAAAGTCAATTTATTGCTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAGGGTTCGGTTACTAACATGTTTACTTCCATTGTAGGTAATGTGTTTGGGTTCAAGGCCTTGCGCGCTCTACGTCTGGAGGATTTACGAATCCCTACTGCTTATGTTAAAACTTTCCAAGGCCCGCCTCACGGGATCCAAGTTGAAAGAGATAAATTGAACAAAGCAGTTTATGAATGTCTCCGTGGTGGACTTGATTTTACCAAAGATGATGAGAATGTTAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTGTGCCGAAGCAATTTATAAAGCGCAGGCTGAAACAGGTGAAATCAAAGGGCATTACTTGAATGCTACTGCAGGTACATGCGAAGACATGATGAAAAGAGCCGTATTTGCCAGAGAATTGGGAGTTCCTATCGTAATGCACGATTACTTAACGGGGGGATTCACTGCAAATACTACCTTGGCTCATTATTGCCGAGATAATGGTCTACTTCTTCACATCCACCGTGCAATGCATGCTGTTATTGATAGACAGAAGAATCATGGTATGCACTTTCGTGTACTAGCTAAAGCATTACGTATGTCTGGTGGAGATCATATCCACGCTGGTACCGTAGTAGGTAAACTTGAGGGGGAAAGAGAAATCACTTTAGGCTTATTTTACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00630 ko00640 ko00710 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00630 map00640 map00710 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

RuBisCO_large RuBisCO_large_N

Protein Analysis

247

Amino Acids

27.96

Weight (kDa)

6.63

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuBisCO_large_N	PF02788	5 - 66	2e-18	Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_large	PF00016	83 - 243	3.8e-72	Ribulose bisphosphate carboxylase large chain, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07732 ATMG00280
malus_domestica	MD07G1039000.v1.1 MD07G1110300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0043001
rosa_laevigata	RLG00000030425
rosa_multiflora	Rmu_sc0000239.1_g000052
rosa_samantha	Rh5BG294900 Rh5DG304700
rosa_wichuraiana	Rw5G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
Acc36I	ACCTGC	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	223, 236
AfaI	GTAC	3 cut(s)	433, 636, 685
AfiI	CCNNNNNNNGG	2 cut(s)	38, 224
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	6 cut(s)	29, 92, 148, 239, 253, 418
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	2 cut(s)	71, 641
AluI	AGCT	2 cut(s)	71, 641
Alw26I	GTCTC	2 cut(s)	278, 336
AlwI	GGATC	2 cut(s)	223, 236
AoxI	GGCC	2 cut(s)	150, 214
Asp718I	GGTACC	1 cut(s)	683
AspLEI	GCGC	3 cut(s)	159, 161, 382
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	407
BaeI	ACNNNNGTAYC	4 cut(s)	667, 675, 700, 708
BamHI	GGATCC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	447
BceAI	ACGGC	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	278, 336
BfaI	CTAG	1 cut(s)	638
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	230, 685
BmsI	GCATC	1 cut(s)	5
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	2 cut(s)	60, 191
BpuEI	CTTGAG	1 cut(s)	722
BsaAI	YACGTR	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	211, 277, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 224
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	591
BseDI	CCNNGG	3 cut(s)	211, 277, 534
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	38, 224
BseMI	GCAATG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	14
BsePI	GCGCGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	152, 216
BshNI	GGYRCC	1 cut(s)	683
BslI	CCNNNNNNNGG	2 cut(s)	38, 224
BsmAI	GTCTC	2 cut(s)	278, 336
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	152, 216
Bso31I	GGTCTC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	228, 667
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	2 cut(s)	152, 216
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	740
BspLI	GGNNCC	2 cut(s)	230, 685
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	223, 236
BspT107I	GGYRCC	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	211, 277, 534
BssHII	GCGCGC	1 cut(s)	157
BssMI	GATC	2 cut(s)	228, 667
BssT1I	CCWWGG	2 cut(s)	211, 534
Bst4CI	ACNGT	3 cut(s)	347, 581, 688
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	4 cut(s)	159, 218, 384, 591
BstDEI	CTNAG	1 cut(s)	79
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	159, 161, 382
BstKTI	GATC	2 cut(s)	231, 670
BstMAI	GTCTC	2 cut(s)	278, 336
BstMBI	GATC	2 cut(s)	228, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 158, 464, 590
BstNSI	RCATGY	3 cut(s)	115, 438, 593
BstSFI	CTRYAG	1 cut(s)	426
BstSNI	TACGTA	1 cut(s)	653
BstUI	CGCG	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	152, 216
BtgI	CCRYGG	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	573
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	4 cut(s)	159, 218, 384, 591
CciI	TCATGA	1 cut(s)	740
CfoI	GCGC	3 cut(s)	159, 161, 382
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	432, 635, 684
CviAII	CATG	6 cut(s)	112, 435, 445, 590, 617, 741
CviJI	RGCY	8 cut(s)	71, 152, 216, 386, 458, 539, 641, 729
CviKI_1	RGCY	8 cut(s)	71, 152, 216, 386, 458, 539, 641, 729
CviQI	GTAC	3 cut(s)	432, 635, 684
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	2 cut(s)	230, 669
DpnII	GATC	2 cut(s)	228, 667
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco105I	TACGTA	1 cut(s)	653
Eco130I	CCWWGG	2 cut(s)	211, 534
Eco147I	AGGCCT	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	211, 534
EcoT22I	ATGCAT	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	211, 534
FaeI	CATG	6 cut(s)	115, 438, 448, 593, 620, 744
FatI	CATG	6 cut(s)	111, 434, 444, 589, 616, 740
FauI	CCCGC	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	562
FokI	GGATG	1 cut(s)	560
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	3 cut(s)	158, 160, 381
GsuI	CTGGAG	2 cut(s)	60, 191
HaeIII	GGCC	2 cut(s)	152, 216
HhaI	GCGC	3 cut(s)	159, 161, 382
Hin1II	CATG	6 cut(s)	115, 438, 448, 593, 620, 744
Hin6I	GCGC	3 cut(s)	157, 159, 380
HinP1I	GCGC	3 cut(s)	157, 159, 380
HinfI	GANTC	3 cut(s)	183, 516, 613
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	5 cut(s)	117, 284, 563, 635, 698
Hpy188III	TCNNGA	2 cut(s)	170, 741
Hpy8I	GTNNAC	5 cut(s)	117, 284, 563, 635, 698
HpyCH4III	ACNGT	3 cut(s)	347, 581, 688
HpyCH4IV	ACGT	2 cut(s)	166, 652
HpyCH4V	TGCA	6 cut(s)	428, 496, 524, 584, 589, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 158, 464, 590
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	2 cut(s)	166, 652
Hsp92II	CATG	6 cut(s)	115, 438, 448, 593, 620, 744
HspAI	GCGC	3 cut(s)	157, 159, 380
KpnI	GGTACC	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	228, 667
LpnPI	CCDG	9 cut(s)	24, 45, 155, 368, 378, 414, 481, 645, 666
LweI	GCATC	1 cut(s)	5
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	2 cut(s)	166, 652
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	230, 669
MboI	GATC	2 cut(s)	228, 667
MboII	GAAGA	5 cut(s)	56, 104, 452, 560, 622
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	5 cut(s)	53, 248, 316, 369, 473
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	88, 166, 231, 697
Mph1103I	ATGCAT	1 cut(s)	591
MseI	TTAA	3 cut(s)	201, 315, 506
MslI	CAYNNNNRTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	424
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	68, 158, 464, 590
NdeII	GATC	2 cut(s)	228, 667
NlaIII	CATG	6 cut(s)	115, 438, 448, 593, 620, 744
NlaIV	GGNNCC	2 cut(s)	230, 685
NmeAIII	GCCGAG	1 cut(s)	575
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	3 cut(s)	115, 438, 593
OliI	CACNNNNGTG	1 cut(s)	630
PaeI	GCATGC	1 cut(s)	593
PagI	TCATGA	1 cut(s)	740
PauI	GCGCGC	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	152
PciI	ACATGT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	495, 684
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	183, 516, 613
Ppu21I	YACGTR	1 cut(s)	653
PscI	ACATGT	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	230, 685
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	228
PteI	GCGCGC	1 cut(s)	157
RsaI	GTAC	3 cut(s)	433, 636, 685
RsaNI	GTAC	3 cut(s)	432, 635, 684
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	201, 315, 506
Sau3AI	GATC	2 cut(s)	228, 667
Sau96I	GGNCC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	5
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
SnaBI	TACGTA	1 cut(s)	653
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	5 cut(s)	53, 248, 316, 369, 473
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	638
StuI	AGGCCT	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	211, 534
TaaI	ACNGT	3 cut(s)	347, 581, 688
TaiI	ACGT	2 cut(s)	169, 655
TasI	AATT	5 cut(s)	53, 248, 316, 369, 473
TatI	WGTACW	1 cut(s)	634
TfiI	GAWTC	3 cut(s)	183, 516, 613
Tru1I	TTAA	3 cut(s)	201, 315, 506
Tru9I	TTAA	3 cut(s)	201, 315, 506
TscAI	CASTG	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	282, 464
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	526
XceI	RCATGY	3 cut(s)	115, 438, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	1 cut(s)	638
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.