RchiOBHm_Chr5g0058291

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018914
Physical Location & Seq
Reverse (-)
62474038 .. 62474241
204 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGATAACAGTTGCGGCAACTAATGGGGCGGGTGTGATGGCTAAAGTGGCGGACGAATGTGATTCGCGTGCTGGAGGTAACGGAGAACATGGCCGTCAGGCGCCGTGCTTGAGCAATATTATTGACGGCTCTGCAGCTGTGTGGAATGCTTTGGGACTTGATCAAGGGGTACGAATTGTGGACGTTACTTGGGCCATGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

6.81

Weight (kDa)

4.59

Isoelectric Point (pI)

19.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 65 2.5e-15 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018914)

Species Orthologous Gene IDs
prunus_persica Prupe.6G105500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058291 RchiOBHm_Chr5g0058321
rosa_laevigata RLG00000035210 RLG00000035211
rosa_roxburghii Rroxscaffold_1G00022240 Rroxscaffold_1G00022260
rosa_rugosa Rorug05G0313000
rosa_samantha Rh5BG392100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 14, 29, 50
AcoI YGGCCR 1 cut(s) 91
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 171
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AoxI GGCC 2 cut(s) 91, 192
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 31
BceAI ACGGC 3 cut(s) 78, 88, 142
BclI TGATCA 1 cut(s) 160
BfaI CTAG 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 2 cut(s) 15, 135
BlsI GCNGC 2 cut(s) 16, 136
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 101
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 93, 194
BshNI GGYRCC 1 cut(s) 100
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 93, 194
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 3 cut(s) 14, 29, 50
BspANI GGCC 2 cut(s) 93, 194
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 100
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 69
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 93, 194
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 170
CviAII CATG 2 cut(s) 89, 196
CviJI RGCY 5 cut(s) 41, 93, 129, 137, 194
CviKI_1 RGCY 5 cut(s) 41, 93, 129, 137, 194
CviQI GTAC 1 cut(s) 170
DinI GGCGCC 1 cut(s) 102
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 91
EciI GGCGGA 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
FaeI CATG 2 cut(s) 92, 199
FaiI YATR 2 cut(s) 90, 197
FaqI GGGAC 1 cut(s) 168
FatI CATG 2 cut(s) 88, 195
FauI CCCGC 1 cut(s) 22
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 15, 135
Fsp4HI GCNGC 2 cut(s) 15, 135
FspBI CTAG 1 cut(s) 202
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 15, 135
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 2 cut(s) 93, 194
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 92, 199
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 92, 199
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 57, 83
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 202
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 77, 184
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 1 cut(s) 174
Mly113I GGCGCC 1 cut(s) 101
MnlI CCTC 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 151
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 47
NarI GGCGCC 1 cut(s) 101
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 92, 199
NlaIV GGNNCC 1 cut(s) 102
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 16, 136
PluTI GGCGCC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SatI GCNGC 2 cut(s) 15, 135
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 192
SetI ASST 4 cut(s) 79, 139, 186, 203
SfcI CTRYAG 1 cut(s) 132
SfoI GGCGCC 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 174
SsiI CCGC 3 cut(s) 14, 29, 50
SspDI GGCGCC 1 cut(s) 100
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 186
TasI AATT 1 cut(s) 174
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 62
TseI GCWGC 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 96
XspI CTAG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.