RchiOBHm_Chr5g0061051

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010861
Physical Location & Seq
Reverse (-)
66378210 .. 66382264
4055 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 858 bp
ATGAGGTCCAGCAACCACTTGATAGGTGTCCTCAACTTCACCACCTTCCTCCTCTCAATCCCTATCATCGGCGGTGGAATCTGGCTGAGCAGCCGAGCCAACAACACTGACTGCCTCAAGTTCCTCCAATGGCCTCTCATAGTCATAGGAGTCTCCATCATGGTCGTCTCCTTAGCCGGCTTCGCCGGAGCCTGTTACCGTAACACTTTCCTCATGTGGGTCTACCTCTTCGTCATGTTCTTCATCATAGCTGCTCTGATCGGCTTCATCATTTTCGCTTACGCCGTGACGGATAAAGGTTCCGGCAGGGCGCTTGCAAACCAGGCTTATAAGGACTACTATCTGGAGGACTACTCTGGCTGGCTGGAGGAACGCGTAGCAAAAAATAGCTACTGGAGGAAGATTGCTTCTTGTGTGAGGGACTCTAAGGTTTGCAAGAAGATGGACAGGACTGTTAATGGTGTGCCGGAGACTGCTGCCATGTTCTACAACAGAAAGCTTAATTCTATTGAGTCTGGCTGCTGCAAGCCCCCTACAGAGTGTGGCTATACCTATGTGAATGAGACGTTTTGGACCACTGAAGGAGGCTCGGTGGGAACTAATCCCGACTGTTCTATGTGGAACAATGATCAACAGGAACTCTGCTATTCCTGTAACTCTTGCAAGGCTGGTGTGCTGGCCAGCATTAGGAAGAGTTGGAGAAAGGTCTCTGTCATTAACATAGTTGTATTGATCGTCCTAGTGATCTTCTATGTGATTGGCTGTGCAGCGTTCAGAAACAATCGTCGGATTGACAATGATGAACCGTATGGTGAGGCTCGGATGACAAAGGCGCAACCTAGCCCTTTCCAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

285

Amino Acids

32.05

Weight (kDa)

8.87

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 5 - 256 1.5e-38 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 375
AciI CCGC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 678
AcuI CTGAAG 1 cut(s) 600
AfiI CCNNNNNNNGG 3 cut(s) 68, 217, 687
AflIII ACRYGT 1 cut(s) 373
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 3 cut(s) 251, 390, 499
AluI AGCT 3 cut(s) 251, 390, 499
Alw26I GTCTC 5 cut(s) 157, 172, 464, 557, 712
AoxI GGCC 2 cut(s) 131, 678
ApeKI GCWGC 6 cut(s) 90, 251, 476, 519, 522, 767
AspLEI GCGC 2 cut(s) 313, 835
AspS9I GGNCC 2 cut(s) 6, 573
AsuHPI GGTGA 2 cut(s) 31, 824
AvaII GGWCC 2 cut(s) 6, 573
BalI TGGCCA 1 cut(s) 680
BbvI GCAGC 6 cut(s) 102, 238, 463, 506, 509, 779
BccI CCATC 2 cut(s) 164, 436
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 323
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 5 cut(s) 157, 172, 464, 557, 712
BfaI CTAG 3 cut(s) 740, 840, 856
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 314
BisI GCNGC 6 cut(s) 91, 252, 477, 520, 523, 768
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 6 cut(s) 92, 253, 478, 521, 524, 769
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 2 cut(s) 6, 573
BmgT120I GGNCC 2 cut(s) 6, 573
BmiI GGNNCC 2 cut(s) 190, 301
BmrFI CCNGG 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpmI CTGGAG 3 cut(s) 365, 386, 415
Bpu10I CCTNAGC 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 712
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 217, 687
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 828
BseLI CCNNNNNNNGG 3 cut(s) 68, 217, 687
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 6 cut(s) 102, 238, 463, 506, 509, 779
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 2 cut(s) 133, 680
BsiSI CCGG 4 cut(s) 177, 186, 303, 467
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 68, 217, 687
BsmAI GTCTC 5 cut(s) 157, 172, 464, 557, 712
BsmBI CGTCTC 2 cut(s) 172, 557
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 2 cut(s) 133, 680
Bso31I GGTCTC 1 cut(s) 712
Bsp143I GATC 4 cut(s) 258, 628, 732, 744
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 1 cut(s) 72
BspANI GGCC 2 cut(s) 133, 680
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 190, 301
BspTNI GGTCTC 1 cut(s) 712
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 4 cut(s) 258, 628, 732, 744
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 4 cut(s) 200, 454, 611, 807
Bst6I CTCTTC 2 cut(s) 233, 686
BstC8I GCNNGC 6 cut(s) 178, 315, 362, 527, 678, 682
BstDEI CTNAG 3 cut(s) 86, 172, 426
BstF5I GGATG 1 cut(s) 828
BstFNI CGCG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 2 cut(s) 313, 835
BstKTI GATC 4 cut(s) 261, 631, 735, 747
BstMAI GTCTC 5 cut(s) 157, 172, 464, 557, 712
BstMBI GATC 4 cut(s) 258, 628, 732, 744
BstMWI GCNNNNNNNGC 2 cut(s) 182, 323
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 6 cut(s) 102, 238, 463, 506, 509, 779
BsuRI GGCC 2 cut(s) 133, 680
BtsCI GGATG 1 cut(s) 828
BtsIMutI CAGTG 2 cut(s) 105, 576
Cac8I GCNNGC 6 cut(s) 178, 315, 362, 527, 678, 682
CfoI GCGC 2 cut(s) 313, 835
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 6, 573
CviAII CATG 4 cut(s) 160, 214, 235, 481
DdeI CTNAG 3 cut(s) 86, 172, 426
DpnI GATC 4 cut(s) 260, 630, 734, 746
DpnII GATC 4 cut(s) 258, 628, 732, 744
EaeI YGGCCR 1 cut(s) 678
Eam1104I CTCTTC 2 cut(s) 233, 686
EarI CTCTTC 2 cut(s) 233, 686
Eco31I GGTCTC 1 cut(s) 712
Eco47I GGWCC 2 cut(s) 6, 573
Eco57I CTGAAG 1 cut(s) 600
EcoRII CCWGG 1 cut(s) 321
Esp3I CGTCTC 2 cut(s) 172, 557
FaeI CATG 4 cut(s) 163, 217, 238, 484
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 159, 213, 234, 480
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 6 cut(s) 91, 252, 477, 520, 523, 768
FokI GGATG 1 cut(s) 835
Fsp4HI GCNGC 6 cut(s) 91, 252, 477, 520, 523, 768
FspBI CTAG 3 cut(s) 740, 840, 856
GlaI GCGC 2 cut(s) 312, 834
GluI GCNGC 6 cut(s) 91, 252, 477, 520, 523, 768
GsuI CTGGAG 3 cut(s) 365, 386, 415
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 2 cut(s) 133, 680
HapII CCGG 4 cut(s) 177, 186, 303, 467
HhaI GCGC 2 cut(s) 313, 835
Hin1II CATG 4 cut(s) 163, 217, 238, 484
Hin6I GCGC 2 cut(s) 311, 833
HinP1I GCGC 2 cut(s) 311, 833
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 4 cut(s) 78, 150, 422, 512
HpaII CCGG 4 cut(s) 177, 186, 303, 467
HphI GGTGA 2 cut(s) 31, 824
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 258, 776, 789, 822
Hpy188III TCNNGA 2 cut(s) 344, 605
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 789
HpyAV CCTTC 2 cut(s) 55, 575
HpyCH4III ACNGT 4 cut(s) 200, 454, 611, 807
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 5 cut(s) 317, 435, 525, 663, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 323
HpyF3I CTNAG 3 cut(s) 86, 172, 426
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 4 cut(s) 163, 217, 238, 484
HspAI GCGC 2 cut(s) 311, 833
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 4 cut(s) 258, 628, 732, 744
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 6 cut(s) 102, 238, 463, 506, 509, 779
MaeI CTAG 3 cut(s) 740, 840, 856
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 4 cut(s) 194, 200, 286, 653
MalI GATC 4 cut(s) 260, 630, 734, 746
MboI GATC 4 cut(s) 258, 628, 732, 744
MboII GAAGA 6 cut(s) 220, 232, 412, 451, 703, 739
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 1 cut(s) 502
MluI ACGCGT 1 cut(s) 373
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 3 cut(s) 159, 416, 521
MmeI TCCRAC 2 cut(s) 677, 767
Mox20I TGGCCA 1 cut(s) 680
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 680
MseI TTAA 3 cut(s) 456, 501, 717
Msp20I TGGCCA 1 cut(s) 680
MspI CCGG 4 cut(s) 177, 186, 303, 467
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 182, 323
NaeI GCCGGC 1 cut(s) 178
NdeII GATC 4 cut(s) 258, 628, 732, 744
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 4 cut(s) 163, 217, 238, 484
NlaIV GGNNCC 2 cut(s) 190, 301
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 6 cut(s) 92, 253, 478, 521, 524, 769
PleI GAGTC 3 cut(s) 158, 416, 520
PpsI GAGTC 3 cut(s) 158, 416, 520
PsiI TTATAA 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 190, 301
PspPI GGNCC 2 cut(s) 6, 573
SaqAI TTAA 3 cut(s) 456, 501, 717
SatI GCNGC 6 cut(s) 91, 252, 477, 520, 523, 768
Sau3AI GATC 4 cut(s) 258, 628, 732, 744
Sau96I GGNCC 2 cut(s) 6, 573
SchI GAGTC 3 cut(s) 159, 416, 521
ScrFI CCNGG 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 6, 573
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 502
SsiI CCGC 1 cut(s) 72
SspMI CTAG 3 cut(s) 740, 840, 856
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 4 cut(s) 200, 454, 611, 807
TaiI ACGT 1 cut(s) 569
TasI AATT 1 cut(s) 502
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 3 cut(s) 456, 501, 717
Tru9I TTAA 3 cut(s) 456, 501, 717
TscAI CASTG 2 cut(s) 112, 583
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 6 cut(s) 90, 251, 476, 519, 522, 767
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 232, 256, 816
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 112, 583
VpaK11BI GGWCC 2 cut(s) 6, 573
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 740, 840, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.