RchiOBHm_Chr5g0062051

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018606
Physical Location & Seq
Reverse (-)
67641526 .. 67643550
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 780 bp
ATGCATTCTGTTAACTTTTGTTTAGAATTGCAGGAAGATTTGAGAAAGATTCATGTGGGTTTGATTTTTATCGCCAAGATTGTGGTGCAGGAAGAGATCTTTGTGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGCGTCACTACAACAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGATGCAAAATATAAGAAACGACACTTTCAGTGTGTATATGAAGATAGAAGGAAGGCTGTTAAAGATGTCCCTTGCTTTTGGGTTACGGCAATGTATGCTAACAAGATAATTCGTAAGGAGATTGCAAAGCACGATGAAGATGCTCTCGAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTAAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGAGGAGAGTGTACATTCTTGATGGCAGTTGGGACGGAAATCAAATGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATGACCATTGGATCTGAGGTTGTTCAAGTAGTCCAAACATGTCAAAGTTTCTTCAACTTCTTTGCTACGAAGACTCATCGGACTTCTCTTTGTTTGGATGAAGATGCTGATAAACTCGAAGGCAATATTATTCCCCTGGATTATGCAATCGCTGTCATACTTAGAGATGATATCATTCCACACGCAATATCGTGGTTTAATTATGATGAAGAAGGTGCTATGGATGAAGAAGATTAG

Protein Analysis

259

Amino Acids

30.59

Weight (kDa)

5.51

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 46 - 247 2.4e-44 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018606)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0062051
rosa_laevigata RLG00000035528
rosa_multiflora Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii Rroxscaffold_2G00153690
rosa_rugosa Rorug05G0345800
rosa_samantha Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana Rw2G002190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 562
AcsI RAATTY 2 cut(s) 332, 389
AcuI CTGAAG 2 cut(s) 359, 473
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 581
AgsI TTSAA 3 cut(s) 421, 569, 598
AjnI CCWGG 2 cut(s) 511, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 116, 128, 385, 451
AluI AGCT 4 cut(s) 116, 128, 385, 451
AlwI GGATC 1 cut(s) 562
ApoI RAATTY 2 cut(s) 332, 389
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 620
BccI CCATC 2 cut(s) 452, 475
BceAI ACGGC 1 cut(s) 285
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 513, 680
BciVI GTATCC 1 cut(s) 519
BfuI GTATCC 1 cut(s) 519
BglII AGATCT 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 513, 680
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 513, 680
BmsI GCATC 3 cut(s) 175, 313, 637
BpiI GAAGAC 1 cut(s) 620
BsaBI GATNNNNATC 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 678
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 68
BseBI CCWGG 2 cut(s) 513, 680
BseDI CCNNGG 1 cut(s) 678
BseGI GGATG 4 cut(s) 190, 463, 646, 772
BseJI GATNNNNATC 1 cut(s) 68
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 477
BsgI GTGCAG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 236, 505
BsmFI GGGAC 2 cut(s) 236, 505
BsmI GAATGC 1 cut(s) 4
Bsp1407I TGTACA 1 cut(s) 470
Bsp143I GATC 3 cut(s) 96, 367, 554
BspCNI CTCAG 1 cut(s) 550
BspPI GGATC 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 279
BsrGI TGTACA 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 678
BssMI GATC 3 cut(s) 96, 367, 554
BssNI GRCGYC 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 513, 680
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 470
BstDEI CTNAG 2 cut(s) 558, 704
BstF5I GGATG 4 cut(s) 190, 463, 646, 772
BstKTI GATC 3 cut(s) 99, 370, 557
BstMBI GATC 3 cut(s) 96, 367, 554
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 2 cut(s) 513, 680
BstNSI RCATGY 1 cut(s) 585
BstSCI CCNGG 2 cut(s) 511, 678
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 2 cut(s) 96, 554
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 96, 554
BsuI GTATCC 1 cut(s) 519
BtsCI GGATG 4 cut(s) 190, 463, 646, 772
BtsIMutI CAGTG 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 471
CviAII CATG 4 cut(s) 53, 354, 394, 582
CviJI RGCY 5 cut(s) 116, 128, 239, 385, 451
CviKI_1 RGCY 5 cut(s) 116, 128, 239, 385, 451
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 2 cut(s) 558, 704
DpnI GATC 3 cut(s) 98, 369, 556
DpnII GATC 3 cut(s) 96, 367, 554
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco32I GATATC 2 cut(s) 346, 715
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 2 cut(s) 359, 473
EcoO109I RGGNCCY 1 cut(s) 430
EcoRI GAATTC 2 cut(s) 332, 389
EcoRII CCWGG 2 cut(s) 511, 678
EcoRV GATATC 2 cut(s) 346, 715
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 56, 357, 397, 585
FaqI GGGAC 2 cut(s) 236, 505
FatI CATG 4 cut(s) 52, 353, 393, 581
FokI GGATG 3 cut(s) 197, 470, 653
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 4 cut(s) 56, 357, 397, 585
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 4 cut(s) 49, 378, 401, 616
HpaI GTTAAC 1 cut(s) 13
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 2 cut(s) 13, 471
Hpy188I TCNGA 2 cut(s) 559, 624
Hpy188III TCNNGA 3 cut(s) 329, 337, 478
Hpy8I GTNNAC 2 cut(s) 13, 471
HpyAV CCTTC 7 cut(s) 100, 225, 229, 334, 448, 656, 749
HpyCH4V TGCA 6 cut(s) 4, 31, 88, 188, 308, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 558, 704
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 4 cut(s) 56, 357, 397, 585
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 3 cut(s) 96, 367, 554
LweI GCATC 3 cut(s) 175, 313, 637
MaeIII GTNAC 2 cut(s) 140, 265
MalI GATC 3 cut(s) 98, 369, 556
MboI GATC 3 cut(s) 96, 367, 554
MboII GAAGA 9 cut(s) 47, 104, 236, 332, 396, 586, 625, 656, 764
MflI RGATCY 2 cut(s) 96, 554
MluCI AATT 5 cut(s) 26, 291, 332, 389, 742
MlyI GAGTC 1 cut(s) 610
MnlI CCTC 4 cut(s) 421, 443, 455, 553
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 12, 243, 741
MspA1I CMGCKG 1 cut(s) 385
MspR9I CCNGG 2 cut(s) 513, 680
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 513, 680
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 3 cut(s) 96, 367, 554
NlaIII CATG 4 cut(s) 56, 357, 397, 585
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 585
PciI ACATGT 1 cut(s) 581
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 49, 378, 401
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PpuMI RGGWCCY 1 cut(s) 430
PscI ACATGT 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 511, 678
PspGI CCWGG 2 cut(s) 511, 678
PspPI GGNCC 1 cut(s) 430
PspPPI RGGWCCY 1 cut(s) 430
PsuI RGATCY 2 cut(s) 96, 554
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
SaqAI TTAA 3 cut(s) 12, 243, 741
Sau3AI GATC 3 cut(s) 96, 367, 554
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 2 cut(s) 513, 680
SetI ASST 8 cut(s) 118, 130, 387, 432, 453, 524, 564, 760
SfaNI GCATC 3 cut(s) 175, 313, 637
SinI GGWCC 1 cut(s) 430
Sse9I AATT 5 cut(s) 26, 291, 332, 389, 742
SspI AATATT 1 cut(s) 670
StyD4I CCNGG 2 cut(s) 511, 678
TaqI TCGA 2 cut(s) 330, 660
TasI AATT 5 cut(s) 26, 291, 332, 389, 742
TatI WGTACW 1 cut(s) 470
TfiI GAWTC 3 cut(s) 49, 378, 401
Tru1I TTAA 3 cut(s) 12, 243, 741
Tru9I TTAA 3 cut(s) 12, 243, 741
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 6 cut(s) 41, 237, 333, 382, 657, 765
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 2 cut(s) 332, 389
XceI RCATGY 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.