Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018606

Physical Location & Seq

Genomic Coordinates Forward (+)

1687975 .. 1691386

Gene Structure 3412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGATGGGACTTCACAGTTTTCTGTGAAAAAGTTAAACTTAGCGGAAAGCAAATGGGAAAATGTGCAAAGTTTAGGCGACCAGAGCTTGTACTTGTTTCGTGAACATGTAATGTCATTGCCGAACCCATGTTTCGTAGGATGTGAGAAAAACTCAATCTACTTCGCAACAACAAAAGTTGAAGAATATAGAATATACAACCTTGATGAAGGTAAAGACATGATGAGTTCTATTTGGGTTCATTACATGTATAATTGGACTGTTGTTCGGCCAAAAGAGAAACTTGTTGACCACGGTCCAAGCCCGATTGTGATCCAATTACAGAATCGGGTGCGAGCAGAAAATCCCGGTCACTCCAGAGTCCAGACCTCAAAATTGTCGTCTCTAATTCTCTCGACTCCATTACTCACAATGACTGAGCCGCGCAAAAGCAAGAGAAAATGGGATCAGTTTGTTCATGTTTCACACAAGGCTGTCCAGACCCAGAAGGAAATCGACAACTTGGGTTTGAACATGAAGGATACTACAGAGGAAAAGGAAGATTTGAGAAAGATTCATGCCAAGATTGTGGAGCAGGAAGAGATGTTTGCGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGTGTCGCTACAACAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGAAGCAGAATATAAGAAACGACACTTTCAGAGTGTATATGAAGATAGAAGGAAGGCTGTTAAAGATGTCCCTTGCTTTTGGGTTACAGCAATGTATGCTAACAAGATAATCCGTAAGGAGATTGCAAAGCACGATGAAGATGCTCTCGAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTAAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGCGGAGAGTGTACATTCTTGATGGCAATTGGGACGGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATGACCATTGGATCTGAGGTTGTTCAAGTAGCCCAAACATGTCAAAGTTTCTTCAACTTCTTTGCTACGAAAACTCATCGGACTTCTCTTTGTTTGGATGAAGATGCTGTAAGTTTGGATTCGTATATGGTACTTAGGTTGTTCAGTTTAGTTAATAATGATGTTAAGCTAGCTTTCCTAATATCTTTTAATGGATGCACTGTGTCAGGACAAACTCAAAGGCAATATTATTCCCCTGGATTATGCAATCGCGTATGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0080027 GO:0098542 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

430

Amino Acids

50.27

Weight (kDa)

8.44

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	3 - 67	9.5e-10	KIB1-4 beta-propeller
NAP	PF00956	179 - 372	2e-34	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018606)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062051
rosa_laevigata	RLG00000035528
rosa_multiflora	Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153690
rosa_rugosa	Rorug05G0345800
rosa_samantha	Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana	Rw2G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	424, 1281
AciI	CCGC	3 cut(s)	44, 422, 948
AclWI	GGATC	3 cut(s)	307, 453, 1048
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	818, 875
AcuI	CTGAAG	2 cut(s)	845, 959
AfaI	GTAC	3 cut(s)	92, 958, 1161
AflIII	ACRYGT	3 cut(s)	106, 246, 1067
AgsI	TTSAA	5 cut(s)	182, 511, 907, 1055, 1084
AjnI	CCWGG	2 cut(s)	997, 1264
AjuI	GAANNNNNNNTTGG	2 cut(s)	887, 919
AluBI	AGCT	7 cut(s)	87, 602, 614, 871, 937, 1198, 1202
AluI	AGCT	7 cut(s)	87, 602, 614, 871, 937, 1198, 1202
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	3 cut(s)	307, 453, 1048
AoxI	GGCC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	818, 875
ArsI	GACNNNNNNTTYG	4 cut(s)	365, 397, 900, 932
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	296, 916
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	913
AsuNHI	GCTAGC	1 cut(s)	1198
AvaII	GGWCC	2 cut(s)	296, 916
BaeI	ACNNNNGTAYC	2 cut(s)	1151, 1184
BccI	CCATC	2 cut(s)	938, 961
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	2 cut(s)	999, 1266
BciVI	GTATCC	2 cut(s)	514, 1005
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	1199
BfmI	CTRYAG	1 cut(s)	525
BfuI	GTATCC	2 cut(s)	514, 1005
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	3 cut(s)	348, 999, 1266
Bme18I	GGWCC	2 cut(s)	296, 916
BmgT120I	GGNCC	2 cut(s)	296, 916
BmrFI	CCNGG	3 cut(s)	348, 999, 1266
BmsI	GCATC	3 cut(s)	799, 1123, 1214
BmtI	GCTAGC	1 cut(s)	1202
BoxI	GACNNNNGTC	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	292, 1264
Bse1I	ACTGG	1 cut(s)	995
Bse3DI	GCAATG	2 cut(s)	116, 765
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	999, 1266
BseDI	CCNNGG	2 cut(s)	292, 1264
BseGI	GGATG	5 cut(s)	10, 146, 949, 1132, 1229
BseJI	GATNNNNATC	1 cut(s)	311
BseMI	GCAATG	2 cut(s)	116, 765
BseMII	CTCAG	2 cut(s)	408, 1035
BseNI	ACTGG	1 cut(s)	995
Bsh1236I	CGCG	2 cut(s)	424, 1281
BshFI	GGCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	3 cut(s)	22, 722, 991
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	3 cut(s)	22, 722, 991
BsnI	GGCC	1 cut(s)	271
Bsp1407I	TGTACA	1 cut(s)	956
Bsp143I	GATC	4 cut(s)	312, 445, 853, 1040
BspACI	CCGC	3 cut(s)	44, 422, 948
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	2 cut(s)	409, 1036
BspFNI	CGCG	2 cut(s)	424, 1281
BspOI	GCTAGC	1 cut(s)	1202
BspPI	GGATC	3 cut(s)	307, 453, 1048
BsrDI	GCAATG	2 cut(s)	116, 765
BsrGI	TGTACA	1 cut(s)	956
BsrI	ACTGG	1 cut(s)	995
BssECI	CCNNGG	2 cut(s)	292, 1264
BssMI	GATC	4 cut(s)	312, 445, 853, 1040
Bst2UI	CCWGG	2 cut(s)	999, 1266
Bst4CI	ACNGT	4 cut(s)	18, 262, 296, 1231
Bst6I	CTCTTC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstAUI	TGTACA	1 cut(s)	956
BstC8I	GCNNGC	2 cut(s)	336, 1200
BstDEI	CTNAG	4 cut(s)	40, 417, 1044, 1163
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	5 cut(s)	10, 146, 949, 1132, 1229
BstFNI	CGCG	2 cut(s)	424, 1281
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	4 cut(s)	315, 448, 856, 1043
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	4 cut(s)	312, 445, 853, 1040
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 764
BstNI	CCWGG	2 cut(s)	999, 1266
BstNSI	RCATGY	3 cut(s)	110, 250, 1071
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	346, 997, 1264
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	2 cut(s)	424, 1281
BstX2I	RGATCY	1 cut(s)	1040
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	1040
BsuI	GTATCC	2 cut(s)	514, 1005
BsuRI	GGCC	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	5 cut(s)	10, 146, 949, 1132, 1229
BtsIMutI	CAGTG	1 cut(s)	1227
Cac8I	GCNNGC	2 cut(s)	336, 1200
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	296, 916
Csp6I	GTAC	3 cut(s)	91, 957, 1160
CviQI	GTAC	3 cut(s)	91, 957, 1160
DdeI	CTNAG	4 cut(s)	40, 417, 1044, 1163
DpnI	GATC	4 cut(s)	314, 447, 855, 1042
DpnII	GATC	4 cut(s)	312, 445, 853, 1040
EaeI	YGGCCR	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	963
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	296, 916
Eco57I	CTGAAG	2 cut(s)	845, 959
EcoO109I	RGGNCCY	1 cut(s)	916
EcoRI	GAATTC	2 cut(s)	818, 875
EcoRII	CCWGG	2 cut(s)	997, 1264
EcoRV	GATATC	1 cut(s)	832
Esp3I	CGTCTC	1 cut(s)	387
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 267, 299
FaqI	GGGAC	3 cut(s)	22, 722, 991
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	5 cut(s)	17, 153, 956, 1139, 1236
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	1199
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	7 cut(s)	325, 360, 397, 553, 864, 887, 1148
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	913
Hpy166II	GTNNAC	3 cut(s)	104, 289, 957
Hpy188I	TCNGA	3 cut(s)	699, 1045, 1110
Hpy188III	TCNNGA	9 cut(s)	101, 357, 364, 394, 478, 815, 823, 964, 1236
Hpy8I	GTNNAC	3 cut(s)	104, 289, 957
HpyAV	CCTTC	8 cut(s)	203, 481, 511, 586, 711, 715, 820, 934
HpyCH4III	ACNGT	4 cut(s)	18, 262, 296, 1231
HpyCH4V	TGCA	4 cut(s)	67, 794, 1227, 1275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 764
HpyF3I	CTNAG	4 cut(s)	40, 417, 1044, 1163
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	312, 445, 853, 1040
LmnI	GCTCC	1 cut(s)	571
LweI	GCATC	3 cut(s)	799, 1123, 1214
MaeI	CTAG	1 cut(s)	1199
MaeIII	GTNAC	2 cut(s)	350, 751
MalI	GATC	4 cut(s)	314, 447, 855, 1042
MboI	GATC	4 cut(s)	312, 445, 853, 1040
MboII	GAAGA	8 cut(s)	194, 551, 590, 722, 818, 882, 1072, 1142
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	1 cut(s)	1040
MluCI	AATT	7 cut(s)	253, 317, 374, 387, 818, 875, 972
MlyI	GAGTC	2 cut(s)	369, 391
MnlI	CCTC	5 cut(s)	379, 523, 907, 929, 1039
MseI	TTAA	5 cut(s)	35, 729, 1182, 1194, 1218
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	348, 999, 1266
MunI	CAATTG	1 cut(s)	972
MvaI	CCWGG	2 cut(s)	999, 1266
MvnI	CGCG	2 cut(s)	424, 1281
MwoI	GCNNNNNNNGC	2 cut(s)	84, 764
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	4 cut(s)	312, 445, 853, 1040
NheI	GCTAGC	1 cut(s)	1198
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	3 cut(s)	110, 250, 1071
PciI	ACATGT	3 cut(s)	106, 246, 1067
PfeI	GAWTC	5 cut(s)	325, 553, 864, 887, 1148
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	2 cut(s)	368, 391
PpsI	GAGTC	2 cut(s)	368, 391
PpuMI	RGGWCCY	1 cut(s)	916
PscI	ACATGT	3 cut(s)	106, 246, 1067
PshAI	GACNNNNGTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	916
Psp6I	CCWGG	2 cut(s)	997, 1264
PspGI	CCWGG	2 cut(s)	997, 1264
PspPI	GGNCC	2 cut(s)	296, 916
PspPPI	RGGWCCY	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	1040
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	3 cut(s)	92, 958, 1161
RsaNI	GTAC	3 cut(s)	91, 957, 1160
SaqAI	TTAA	5 cut(s)	35, 729, 1182, 1194, 1218
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	4 cut(s)	312, 445, 853, 1040
Sau96I	GGNCC	2 cut(s)	296, 916
SchI	GAGTC	2 cut(s)	369, 391
ScrFI	CCNGG	3 cut(s)	348, 999, 1266
SfaNI	GCATC	3 cut(s)	799, 1123, 1214
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	2 cut(s)	296, 916
Sse9I	AATT	7 cut(s)	253, 317, 374, 387, 818, 875, 972
SsiI	CCGC	3 cut(s)	44, 422, 948
SspI	AATATT	1 cut(s)	1256
SspMI	CTAG	1 cut(s)	1199
StyD4I	CCNGG	3 cut(s)	346, 997, 1264
TaaI	ACNGT	4 cut(s)	18, 262, 296, 1231
TaqI	TCGA	3 cut(s)	395, 495, 816
TasI	AATT	7 cut(s)	253, 317, 374, 387, 818, 875, 972
TatI	WGTACW	2 cut(s)	90, 956
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	5 cut(s)	325, 553, 864, 887, 1148
Tru1I	TTAA	5 cut(s)	35, 729, 1182, 1194, 1218
Tru9I	TTAA	5 cut(s)	35, 729, 1182, 1194, 1218
TscAI	CASTG	1 cut(s)	1234
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	9 cut(s)	222, 230, 446, 530, 545, 723, 819, 868, 1143
TspGWI	ACGGA	2 cut(s)	770, 995
TspRI	CASTG	1 cut(s)	1234
VpaK11BI	GGWCC	2 cut(s)	296, 916
XapI	RAATTY	2 cut(s)	818, 875
XceI	RCATGY	3 cut(s)	110, 250, 1071
XspI	CTAG	1 cut(s)	1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.