Rroxscaffold_2G00153690

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018606
Physical Location & Seq
Reverse (-)
90452168 .. 90454119
1952 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00153690.1

Sequence Viewer

Length: 831 bp
ATGACTGAGCCGCGCAAAAGCAAGAGAAAATGGGATCAGTTTGTTCATGTTTCACACAAGGCTGTCCAGACCCAGATGGAAATCGACAACTTGGGTTTGAACATGAAGGATACTACTGCGGAAAAGGAAGATTTGAGAAAGATTCATGCCAAGATTGTGGAGCAGGAAGAGATCTTTGTGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGTGTCGCTACAACAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGAAGCAGAATATAAGAAACGACACTTTCAGAGTGTATATGAAGATAGAAGGAAGGCTGTTAAAGATGTCCCTTGCTTTTGGGTTACAGCAATGTATGCTAACAAGATAATCCGTAAGGAGATTGCAAAGCACGATGAAGATGCTCTCGAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTAAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCGAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGCGGAGGGTGTACATTCTTGATGGCAGTTGGGACGGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATAACCATTGGATCTGAGGTTGTTCAAGTAGCCCAAACATGTCAAAGTTTCTTCAACTTCTTTGCTACGAAAACTCATCGGACTTCTCTTTGTTTGGATGAAGATGCTGTAAGTTTGGATTCGTATATGGTACTTAGGTTGTTCAGTTTAGTTAATAATGATGTTAAGCTAGCTTTCCTAATATCTTTTAATGGATGCACTATGTCAGGATAA

Protein Analysis

276

Amino Acids

32.38

Weight (kDa)

7.0

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 43 - 235 8.2e-35 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018606)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0062051
rosa_laevigata RLG00000035528
rosa_multiflora Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii Rroxscaffold_2G00153690
rosa_rugosa Rorug05G0345800
rosa_samantha Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana Rw2G002190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AciI CCGC 3 cut(s) 11, 119, 537
AclWI GGATC 2 cut(s) 42, 637
AcsI RAATTY 2 cut(s) 407, 464
AcuI CTGAAG 2 cut(s) 434, 548
AfaI GTAC 2 cut(s) 547, 750
AflIII ACRYGT 1 cut(s) 656
AgsI TTSAA 3 cut(s) 100, 644, 673
AjnI CCWGG 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 6 cut(s) 191, 203, 460, 526, 787, 791
AluI AGCT 6 cut(s) 191, 203, 460, 526, 787, 791
AlwI GGATC 2 cut(s) 42, 637
ApoI RAATTY 2 cut(s) 407, 464
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 502
AsuII TTCGAA 1 cut(s) 495
AsuNHI GCTAGC 1 cut(s) 787
AvaII GGWCC 1 cut(s) 505
BaeI ACNNNNGTAYC 2 cut(s) 740, 773
BccI CCATC 3 cut(s) 70, 527, 550
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 1 cut(s) 588
BciVI GTATCC 2 cut(s) 103, 594
BfaI CTAG 1 cut(s) 788
BfuI GTATCC 2 cut(s) 103, 594
BglII AGATCT 1 cut(s) 171
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 588
Bme18I GGWCC 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 505
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 3 cut(s) 388, 712, 803
BmtI GCTAGC 1 cut(s) 791
Bpu14I TTCGAA 1 cut(s) 495
BsaBI GATNNNNATC 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 584
Bse3DI GCAATG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 1 cut(s) 588
BseGI GGATG 3 cut(s) 538, 721, 818
BseJI GATNNNNATC 1 cut(s) 80
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 13
BslFI GGGAC 2 cut(s) 311, 580
BsmFI GGGAC 2 cut(s) 311, 580
Bsp119I TTCGAA 1 cut(s) 495
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 4 cut(s) 34, 171, 442, 629
BspACI CCGC 3 cut(s) 11, 119, 537
BspCNI CTCAG 1 cut(s) 625
BspFNI CGCG 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 791
BspPI GGATC 2 cut(s) 42, 637
BspT104I TTCGAA 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 354
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 1 cut(s) 584
BssMI GATC 4 cut(s) 34, 171, 442, 629
Bst2UI CCWGG 1 cut(s) 588
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 789
BstDEI CTNAG 3 cut(s) 6, 633, 752
BstF5I GGATG 3 cut(s) 538, 721, 818
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 4 cut(s) 37, 174, 445, 632
BstMBI GATC 4 cut(s) 34, 171, 442, 629
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 1 cut(s) 660
BstSCI CCNGG 1 cut(s) 586
BstUI CGCG 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 171, 629
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 2 cut(s) 171, 629
BsuI GTATCC 2 cut(s) 103, 594
BtsCI GGATG 3 cut(s) 538, 721, 818
Cac8I GCNNGC 1 cut(s) 789
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 2 cut(s) 546, 749
CviAII CATG 6 cut(s) 47, 103, 146, 429, 469, 657
CviQI GTAC 2 cut(s) 546, 749
DdeI CTNAG 3 cut(s) 6, 633, 752
DpnI GATC 4 cut(s) 36, 173, 444, 631
DpnII GATC 4 cut(s) 34, 171, 442, 629
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 552
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 505
Eco57I CTGAAG 2 cut(s) 434, 548
EcoO109I RGGNCCY 1 cut(s) 505
EcoRI GAATTC 2 cut(s) 407, 464
EcoRII CCWGG 1 cut(s) 586
EcoRV GATATC 1 cut(s) 421
FaeI CATG 6 cut(s) 50, 106, 149, 432, 472, 660
FaqI GGGAC 2 cut(s) 311, 580
FatI CATG 6 cut(s) 46, 102, 145, 428, 468, 656
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 3 cut(s) 545, 728, 825
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 788
GlaI GCGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 15
Hin1II CATG 6 cut(s) 50, 106, 149, 432, 472, 660
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 4 cut(s) 142, 453, 476, 737
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 3 cut(s) 288, 634, 699
Hpy188III TCNNGA 5 cut(s) 67, 404, 412, 553, 825
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 6 cut(s) 100, 175, 300, 304, 409, 523
HpyCH4V TGCA 2 cut(s) 383, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 3 cut(s) 6, 633, 752
Hsp92II CATG 6 cut(s) 50, 106, 149, 432, 472, 660
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 34, 171, 442, 629
LmnI GCTCC 1 cut(s) 160
LweI GCATC 3 cut(s) 388, 712, 803
MaeI CTAG 1 cut(s) 788
MaeIII GTNAC 1 cut(s) 340
MalI GATC 4 cut(s) 36, 173, 444, 631
MboI GATC 4 cut(s) 34, 171, 442, 629
MboII GAAGA 7 cut(s) 140, 179, 311, 407, 471, 661, 731
MflI RGATCY 2 cut(s) 171, 629
MluCI AATT 2 cut(s) 407, 464
MnlI CCTC 4 cut(s) 496, 518, 533, 628
MseI TTAA 4 cut(s) 318, 771, 783, 807
MspA1I CMGCKG 1 cut(s) 460
MspR9I CCNGG 1 cut(s) 588
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 4 cut(s) 34, 171, 442, 629
NheI GCTAGC 1 cut(s) 787
NlaIII CATG 6 cut(s) 50, 106, 149, 432, 472, 660
NspI RCATGY 1 cut(s) 660
NspV TTCGAA 1 cut(s) 495
PciI ACATGT 1 cut(s) 656
PfeI GAWTC 4 cut(s) 142, 453, 476, 737
PkrI GCNGC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 505
PscI ACATGT 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 586
PspGI CCWGG 1 cut(s) 586
PspPI GGNCC 1 cut(s) 505
PspPPI RGGWCCY 1 cut(s) 505
PsuI RGATCY 2 cut(s) 171, 629
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 2 cut(s) 547, 750
RsaNI GTAC 2 cut(s) 546, 749
SaqAI TTAA 4 cut(s) 318, 771, 783, 807
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 4 cut(s) 34, 171, 442, 629
Sau96I GGNCC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 588
SfaNI GCATC 3 cut(s) 388, 712, 803
SfuI TTCGAA 1 cut(s) 495
SinI GGWCC 1 cut(s) 505
Sse9I AATT 2 cut(s) 407, 464
SsiI CCGC 3 cut(s) 11, 119, 537
SspMI CTAG 1 cut(s) 788
StyD4I CCNGG 1 cut(s) 586
TaqI TCGA 3 cut(s) 84, 405, 495
TasI AATT 2 cut(s) 407, 464
TatI WGTACW 1 cut(s) 545
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 4 cut(s) 142, 453, 476, 737
Tru1I TTAA 4 cut(s) 318, 771, 783, 807
Tru9I TTAA 4 cut(s) 318, 771, 783, 807
TspDTI ATGAA 7 cut(s) 35, 119, 134, 312, 408, 457, 732
TspGWI ACGGA 2 cut(s) 359, 584
VpaK11BI GGWCC 1 cut(s) 505
XapI RAATTY 2 cut(s) 407, 464
XceI RCATGY 1 cut(s) 660
XspI CTAG 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.