Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017669.1

Orthogroup ID

OG0018606

Physical Location & Seq

Genomic Coordinates Reverse (-)

46369 .. 48256

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017669.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgactgagccgcgcaaaagcaagagaaaatgggatcagtttgttcatgtttcacacaaggctgtccagacccagatggaaatcgacaacttgggtttgaacatgaaggatactactcctgcggcaaagacattcagagaattgcaggaagatttgagaaagattcatgccaagattgtggagcaggaagagatctttgtgaaggagagagctaaatgggaagctgaaaacaggcgtcactacaacaagaatgagttttttatcaacagatgtcgttgggaagcagaatataagaaacgacactttcagtgtgtatatgaagatagaaggaaggctgttaaagatgtcccttgcttttgggttacagcaatgtatgctaacaagataattcgtaaggagattgcaaagcacgatgaagatgctctcgaattcctgaaggatatcaagtcatgtaggacagatgatctaaaaggattccagctggaattcatgtttgattcttccaatccttatttcaaaaatgaggtcctcaccaaaaagtatgagctgaaggatggaggagagtgtacattcttgatggcagttgggacggaaatcaactggtatcctggcaaaaccttgacagaaagtattgagaaaatgaccattggatctgaggttgttcaagtagtccaaacatgtcaaagtttcttcaacttcttttctacgaagactcatcggacttctctttgtttggatgaagatgctgataaactcgaaggcaatattattcccctggattatgcaatcgctgtcatacttagagatgatatcattccacacgcaatatcatggtttaattatgatgaagaaggtgctatggatgaagaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0080027 GO:0098542 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

291

Amino Acids

34.45

Weight (kDa)

5.63

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018606)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062051
rosa_laevigata	RLG00000035528
rosa_multiflora	Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153690
rosa_rugosa	Rorug05G0345800
rosa_samantha	Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana	Rw2G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	2 cut(s)	11, 122
AclWI	GGATC	2 cut(s)	42, 658
AcsI	RAATTY	2 cut(s)	428, 485
AcuI	CTGAAG	2 cut(s)	455, 569
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	1 cut(s)	568
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	4 cut(s)	100, 517, 665, 694
AjnI	CCWGG	2 cut(s)	607, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	4 cut(s)	212, 224, 481, 547
AluI	AGCT	4 cut(s)	212, 224, 481, 547
AlwI	GGATC	2 cut(s)	42, 658
ApoI	RAATTY	2 cut(s)	428, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	510, 542
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	526
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	716
BccI	CCATC	3 cut(s)	70, 548, 571
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	609, 776
BciVI	GTATCC	2 cut(s)	103, 615
BfuI	GTATCC	2 cut(s)	103, 615
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	11, 123
BlsI	GCNGC	2 cut(s)	12, 124
Bme1390I	CCNGG	2 cut(s)	609, 776
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	526
BmrFI	CCNGG	2 cut(s)	609, 776
BmsI	GCATC	2 cut(s)	409, 733
BpiI	GAAGAC	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	2 cut(s)	609, 776
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	3 cut(s)	559, 742, 868
BseJI	GATNNNNATC	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	332, 601
BsmFI	GGGAC	2 cut(s)	332, 601
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	34, 192, 463, 650
BspACI	CCGC	2 cut(s)	11, 122
BspCNI	CTCAG	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	42, 658
BsrDI	GCAATG	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	4 cut(s)	34, 192, 463, 650
BssNI	GRCGYC	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	609, 776
Bst6I	CTCTTC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	566
BstDEI	CTNAG	3 cut(s)	6, 654, 800
BstF5I	GGATG	3 cut(s)	559, 742, 868
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	4 cut(s)	37, 195, 466, 653
BstMBI	GATC	4 cut(s)	34, 192, 463, 650
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	609, 776
BstNSI	RCATGY	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	607, 774
BstUI	CGCG	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	192, 650
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	2 cut(s)	192, 650
BsuI	GTATCC	2 cut(s)	103, 615
BtsCI	GGATG	3 cut(s)	559, 742, 868
BtsIMutI	CAGTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	526
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	7 cut(s)	47, 103, 167, 450, 490, 678, 831
CviJI	RGCY	7 cut(s)	10, 62, 212, 224, 335, 481, 547
CviKI_1	RGCY	7 cut(s)	10, 62, 212, 224, 335, 481, 547
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	6, 654, 800
DpnI	GATC	4 cut(s)	36, 194, 465, 652
DpnII	GATC	4 cut(s)	34, 192, 463, 650
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco32I	GATATC	2 cut(s)	442, 811
Eco47I	GGWCC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	455, 569
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRI	GAATTC	2 cut(s)	428, 485
EcoRII	CCWGG	2 cut(s)	607, 774
EcoRV	GATATC	2 cut(s)	442, 811
FaeI	CATG	7 cut(s)	50, 106, 170, 453, 493, 681, 834
FaqI	GGGAC	2 cut(s)	332, 601
FatI	CATG	7 cut(s)	46, 102, 166, 449, 489, 677, 830
Fnu4HI	GCNGC	2 cut(s)	11, 123
FokI	GGATG	2 cut(s)	566, 749
Fsp4HI	GCNGC	2 cut(s)	11, 123
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	11, 123
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	7 cut(s)	50, 106, 170, 453, 493, 681, 834
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	4 cut(s)	163, 474, 497, 712
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	3 cut(s)	137, 655, 720
Hpy188III	TCNNGA	4 cut(s)	67, 425, 433, 574
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	8 cut(s)	100, 196, 321, 325, 430, 544, 752, 845
HpyCH4V	TGCA	3 cut(s)	145, 404, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	6, 654, 800
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	7 cut(s)	50, 106, 170, 453, 493, 681, 834
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	34, 192, 463, 650
LmnI	GCTCC	1 cut(s)	181
LweI	GCATC	2 cut(s)	409, 733
MaeIII	GTNAC	2 cut(s)	236, 361
MalI	GATC	4 cut(s)	36, 194, 465, 652
MboI	GATC	4 cut(s)	34, 192, 463, 650
MboII	GAAGA	9 cut(s)	161, 200, 332, 428, 492, 682, 721, 752, 860
MflI	RGATCY	2 cut(s)	192, 650
MluCI	AATT	5 cut(s)	140, 387, 428, 485, 838
MlyI	GAGTC	1 cut(s)	706
MnlI	CCTC	4 cut(s)	517, 539, 551, 649
MseI	TTAA	2 cut(s)	339, 837
MspA1I	CMGCKG	1 cut(s)	481
MspR9I	CCNGG	2 cut(s)	609, 776
MvaI	CCWGG	2 cut(s)	609, 776
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	4 cut(s)	34, 192, 463, 650
NlaIII	CATG	7 cut(s)	50, 106, 170, 453, 493, 681, 834
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	681
PciI	ACATGT	1 cut(s)	677
PfeI	GAWTC	3 cut(s)	163, 474, 497
PkrI	GCNGC	2 cut(s)	12, 124
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	607, 774
PspGI	CCWGG	2 cut(s)	607, 774
PspPI	GGNCC	1 cut(s)	526
PspPPI	RGGWCCY	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	192, 650
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	339, 837
SatI	GCNGC	2 cut(s)	11, 123
Sau3AI	GATC	4 cut(s)	34, 192, 463, 650
Sau96I	GGNCC	1 cut(s)	526
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	609, 776
SetI	ASST	8 cut(s)	214, 226, 483, 528, 549, 620, 660, 856
SfaNI	GCATC	2 cut(s)	409, 733
SinI	GGWCC	1 cut(s)	526
Sse9I	AATT	5 cut(s)	140, 387, 428, 485, 838
SsiI	CCGC	2 cut(s)	11, 122
SspI	AATATT	1 cut(s)	766
StyD4I	CCNGG	2 cut(s)	607, 774
TaqI	TCGA	3 cut(s)	84, 426, 756
TasI	AATT	5 cut(s)	140, 387, 428, 485, 838
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	2 cut(s)	13, 125
TfiI	GAWTC	3 cut(s)	163, 474, 497
Tru1I	TTAA	2 cut(s)	339, 837
Tru9I	TTAA	2 cut(s)	339, 837
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	8 cut(s)	35, 119, 155, 333, 429, 478, 753, 861
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	2 cut(s)	428, 485
XceI	RCATGY	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.