RLG00000035528

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018606
Physical Location & Seq
Reverse (-)
68044146 .. 68046447
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035528

Sequence Viewer

Length: 795 bp
ATGACTAAGCCGCGCAAAAGCAAGAGAAAATGGGATCAGTTCGTTCATGTTTCACACAAGGCTGTCCAGACCCAGATGGAAATCGACAACTTGGGTTTGAACGTGAAGAATACTACTCCTGGGGAAAAGACATTCAGAGAATTGCAGGAAGATTTGAGAAAGATTCATGCCAAGATTGTGGAGCAGGAAGAGATCTTTGTGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGTGTAACTACAACAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGAAGCAGAATATAAGAAACGACACTTTCAGAGTGTATATGAAGATAGAAGGAAGGCTGTTAAAGATGTCCCTTGGTTTTGGGTTACAGCAATATATGCTAACAAGATAATTCGTAAGGAGATTGCAAAGCACGATGAAGATGCTCTCAAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTGAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATAAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGCGGAGAGTGTACATTCTTGGTGGCAGTTGGGACGGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATGACCATTGGATCTGAGGTTGTTCAAGATAAACTCGAAGGCAATATTATTCCCCTGGATTATGCAAGCTCTGTCATACTTAGAGATGATATCATTCCACATGCAATATCGTGGTTTAATTATGATGAAGAGGGTGCTATGGATGAAGAAGATTAG

Protein Analysis

265

Amino Acids

31.28

Weight (kDa)

6.36

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 42 - 213 7e-29 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018606)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0062051
rosa_laevigata RLG00000035528
rosa_multiflora Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii Rroxscaffold_2G00153690
rosa_rugosa Rorug05G0345800
rosa_samantha Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana Rw2G002190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 11, 558
AclWI GGATC 2 cut(s) 42, 658
AcsI RAATTY 2 cut(s) 428, 485
AcuI CTGAAG 2 cut(s) 455, 569
AfaI GTAC 1 cut(s) 568
AgsI TTSAA 3 cut(s) 100, 517, 665
AjnI CCWGG 3 cut(s) 118, 607, 693
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AluBI AGCT 5 cut(s) 212, 224, 481, 547, 708
AluI AGCT 5 cut(s) 212, 224, 481, 547, 708
AlwI GGATC 2 cut(s) 42, 658
ApoI RAATTY 2 cut(s) 428, 485
ArsI GACNNNNNNTTYG 2 cut(s) 510, 542
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 526
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 1 cut(s) 526
BccI CCATC 2 cut(s) 70, 548
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 3 cut(s) 120, 609, 695
BciVI GTATCC 1 cut(s) 615
BfuI GTATCC 1 cut(s) 615
BglII AGATCT 1 cut(s) 192
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 3 cut(s) 120, 609, 695
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 526
BmrFI CCNGG 3 cut(s) 120, 609, 695
BmsI GCATC 1 cut(s) 409
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 119, 350, 693
Bse1I ACTGG 1 cut(s) 605
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 3 cut(s) 120, 609, 695
BseDI CCNNGG 3 cut(s) 119, 350, 693
BseGI GGATG 2 cut(s) 559, 787
BseJI GATNNNNATC 1 cut(s) 80
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 13
BslFI GGGAC 2 cut(s) 332, 601
BsmFI GGGAC 2 cut(s) 332, 601
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 4 cut(s) 34, 192, 463, 650
BspACI CCGC 2 cut(s) 11, 558
BspCNI CTCAG 1 cut(s) 646
BspFNI CGCG 1 cut(s) 13
BspPI GGATC 2 cut(s) 42, 658
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 119, 350, 693
BssMI GATC 4 cut(s) 34, 192, 463, 650
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 3 cut(s) 120, 609, 695
Bst6I CTCTTC 2 cut(s) 183, 762
BstAPI GCANNNNNTGC 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 3 cut(s) 6, 654, 719
BstF5I GGATG 2 cut(s) 559, 787
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 4 cut(s) 37, 195, 466, 653
BstMBI GATC 4 cut(s) 34, 192, 463, 650
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 3 cut(s) 120, 609, 695
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 3 cut(s) 118, 607, 693
BstUI CGCG 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 192, 650
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 2 cut(s) 192, 650
BsuI GTATCC 1 cut(s) 615
BtsCI GGATG 2 cut(s) 559, 787
Cac8I GCNNGC 1 cut(s) 706
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 526
Csp6I GTAC 1 cut(s) 567
CviAII CATG 5 cut(s) 47, 167, 450, 490, 740
CviJI RGCY 8 cut(s) 10, 62, 212, 224, 335, 481, 547, 708
CviKI_1 RGCY 8 cut(s) 10, 62, 212, 224, 335, 481, 547, 708
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 3 cut(s) 6, 654, 719
DpnI GATC 4 cut(s) 36, 194, 465, 652
DpnII GATC 4 cut(s) 34, 192, 463, 650
Eam1104I CTCTTC 2 cut(s) 183, 762
EarI CTCTTC 2 cut(s) 183, 762
EciI GGCGGA 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 350
Eco32I GATATC 2 cut(s) 442, 730
Eco47I GGWCC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 455, 569
EcoO109I RGGNCCY 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 3 cut(s) 118, 607, 693
EcoRV GATATC 2 cut(s) 442, 730
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 5 cut(s) 50, 170, 453, 493, 743
FaqI GGGAC 2 cut(s) 332, 601
FatI CATG 5 cut(s) 46, 166, 449, 489, 739
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 1 cut(s) 11
GlaI GCGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 15
Hin1II CATG 5 cut(s) 50, 170, 453, 493, 743
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 3 cut(s) 163, 474, 497
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 4 cut(s) 137, 309, 468, 655
Hpy188III TCNNGA 3 cut(s) 67, 433, 665
Hpy8I GTNNAC 1 cut(s) 567
HpyAV CCTTC 6 cut(s) 196, 321, 325, 430, 544, 671
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 145, 404, 704, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 3 cut(s) 6, 654, 719
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 5 cut(s) 50, 170, 453, 493, 743
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 34, 192, 463, 650
LmnI GCTCC 1 cut(s) 181
LweI GCATC 1 cut(s) 409
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 236, 361
MalI GATC 4 cut(s) 36, 194, 465, 652
MboI GATC 4 cut(s) 34, 192, 463, 650
MboII GAAGA 7 cut(s) 118, 161, 200, 332, 428, 492, 779
MflI RGATCY 2 cut(s) 192, 650
MluCI AATT 5 cut(s) 140, 387, 428, 485, 757
MnlI CCTC 3 cut(s) 539, 649, 763
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 2 cut(s) 339, 756
MspA1I CMGCKG 1 cut(s) 481
MspR9I CCNGG 3 cut(s) 120, 609, 695
MvaI CCWGG 3 cut(s) 120, 609, 695
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 4 cut(s) 34, 192, 463, 650
NlaIII CATG 5 cut(s) 50, 170, 453, 493, 743
NspI RCATGY 1 cut(s) 743
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 3 cut(s) 163, 474, 497
PkrI GCNGC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 3 cut(s) 118, 607, 693
PspGI CCWGG 3 cut(s) 118, 607, 693
PspPI GGNCC 1 cut(s) 526
PspPPI RGGWCCY 1 cut(s) 526
PsuI RGATCY 2 cut(s) 192, 650
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SaqAI TTAA 2 cut(s) 339, 756
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 4 cut(s) 34, 192, 463, 650
Sau96I GGNCC 1 cut(s) 526
ScrFI CCNGG 3 cut(s) 120, 609, 695
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 526
Sse9I AATT 5 cut(s) 140, 387, 428, 485, 757
SsiI CCGC 2 cut(s) 11, 558
SspI AATATT 1 cut(s) 685
StyD4I CCNGG 3 cut(s) 118, 607, 693
StyI CCWWGG 1 cut(s) 350
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 84, 675
TasI AATT 5 cut(s) 140, 387, 428, 485, 757
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 3 cut(s) 163, 474, 497
Tru1I TTAA 2 cut(s) 339, 756
Tru9I TTAA 2 cut(s) 339, 756
TspDTI ATGAA 6 cut(s) 35, 155, 333, 429, 478, 780
TspGWI ACGGA 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 2 cut(s) 428, 485
XceI RCATGY 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.