Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018606

Physical Location & Seq

Genomic Coordinates Forward (+)

1941289 .. 1943144

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG027700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGATCAGTTTGTTCATGTTTCACTCAAGGCAAGGCTGTCCAGACCCAGATGGAAATCGAAAACTTGGGTTTGAACATGAAGGATACTACAGCGGAAAAGGAAGATTTGAGAAAGATTCATGCCAAGATTGTGGAGCAGGAAGAGATCTTTGTGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGTGTCGCTACAACAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGAAGCAGAATATAAGAAACGACACTTTCAGAGTGTATATGAAGATAGAAGGAAGGCTGTTAAAGATGTCCCTTGCTTTTGGGTTACAGCAATGTATGCTAACAAGATAATCCGTAAGGAGATTGCGAAGCACGATGAAGATGCTCGCGAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTAAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGCGGAGAGTGTACATTCTTGATGGCAATTGGGACGGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATGACCATTGGATCTGAGGTTGTTCAAGTAGCCCAAACATGTCAAAGTTTCTTCAACTTCTTTGCTACGAAAACTCATCGGACTTCTCTTTGTTTGGATGAAGATGCTGATAAACTCAAAGGCAATATTATTCCCCTGGATTATGCAATCGCTGTCATACTTAGAGACGATATCATTCCACACGCAATATCGTGGTTTAATTATGATGAAGAAGCTGCTATGGATGAAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008283 GO:0009987 GO:0016020 GO:0016444 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

276

Amino Acids

32.34

Weight (kDa)

5.3

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	36 - 264	2.2e-42	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018606)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062051
rosa_laevigata	RLG00000035528
rosa_multiflora	Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153690
rosa_rugosa	Rorug05G0345800
rosa_samantha	Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana	Rw2G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	95, 513
AclWI	GGATC	2 cut(s)	13, 613
AcsI	RAATTY	2 cut(s)	383, 440
AcuI	CTGAAG	2 cut(s)	410, 524
AfaI	GTAC	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	76, 472, 620, 649
AjnI	CCWGG	2 cut(s)	562, 729
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	5 cut(s)	167, 179, 436, 502, 809
AluI	AGCT	5 cut(s)	167, 179, 436, 502, 809
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	2 cut(s)	13, 613
ApeKI	GCWGC	1 cut(s)	809
ApoI	RAATTY	2 cut(s)	383, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	3 cut(s)	46, 503, 526
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	2 cut(s)	564, 731
BciVI	GTATCC	2 cut(s)	79, 570
BcoDI	GTCTC	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	2 cut(s)	79, 570
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	810
BlsI	GCNGC	1 cut(s)	811
Bme1390I	CCNGG	2 cut(s)	564, 731
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmrFI	CCNGG	2 cut(s)	564, 731
BmsI	GCATC	2 cut(s)	364, 688
BpuEI	CTTGAG	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	729
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	564, 731
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	3 cut(s)	514, 697, 823
BseJI	GATNNNNATC	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	796
Bsh1236I	CGCG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	287, 556
BsmAI	GTCTC	1 cut(s)	753
BsmBI	CGTCTC	1 cut(s)	753
BsmFI	GGGAC	2 cut(s)	287, 556
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	4 cut(s)	5, 147, 418, 605
Bsp68I	TCGCGA	1 cut(s)	381
BspACI	CCGC	2 cut(s)	95, 513
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	381
BspPI	GGATC	2 cut(s)	13, 613
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	4 cut(s)	5, 147, 418, 605
Bst2UI	CCWGG	2 cut(s)	564, 731
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	609, 755
BstF5I	GGATG	3 cut(s)	514, 697, 823
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	8, 150, 421, 608
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	4 cut(s)	5, 147, 418, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	2 cut(s)	564, 731
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	2 cut(s)	562, 729
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	796
BstX2I	RGATCY	2 cut(s)	147, 605
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	147, 605
BsuI	GTATCC	2 cut(s)	79, 570
BtsCI	GGATG	3 cut(s)	514, 697, 823
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	6 cut(s)	18, 79, 122, 405, 445, 633
CviJI	RGCY	8 cut(s)	38, 167, 179, 290, 436, 502, 626, 809
CviKI_1	RGCY	8 cut(s)	38, 167, 179, 290, 436, 502, 626, 809
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	2 cut(s)	609, 755
DpnI	GATC	4 cut(s)	7, 149, 420, 607
DpnII	GATC	4 cut(s)	5, 147, 418, 605
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	528
Eco32I	GATATC	2 cut(s)	397, 766
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	410, 524
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRI	GAATTC	2 cut(s)	383, 440
EcoRII	CCWGG	2 cut(s)	562, 729
EcoRV	GATATC	2 cut(s)	397, 766
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	6 cut(s)	21, 82, 125, 408, 448, 636
FaqI	GGGAC	2 cut(s)	287, 556
FatI	CATG	6 cut(s)	17, 78, 121, 404, 444, 632
Fnu4HI	GCNGC	1 cut(s)	810
FokI	GGATG	2 cut(s)	521, 704
Fsp4HI	GCNGC	1 cut(s)	810
GluI	GCNGC	1 cut(s)	810
Hin1II	CATG	6 cut(s)	21, 82, 125, 408, 448, 636
HinfI	GANTC	3 cut(s)	118, 429, 452
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	3 cut(s)	264, 610, 675
Hpy188III	TCNNGA	4 cut(s)	43, 380, 388, 529
Hpy8I	GTNNAC	1 cut(s)	522
HpyAV	CCTTC	6 cut(s)	76, 151, 276, 280, 385, 499
HpyCH4V	TGCA	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	2 cut(s)	609, 755
Hsp92II	CATG	6 cut(s)	21, 82, 125, 408, 448, 636
Kzo9I	GATC	4 cut(s)	5, 147, 418, 605
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	796
LweI	GCATC	2 cut(s)	364, 688
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	4 cut(s)	7, 149, 420, 607
MboI	GATC	4 cut(s)	5, 147, 418, 605
MboII	GAAGA	8 cut(s)	116, 155, 287, 383, 447, 637, 707, 815
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	2 cut(s)	147, 605
MluCI	AATT	4 cut(s)	383, 440, 537, 793
MnlI	CCTC	3 cut(s)	472, 494, 604
MseI	TTAA	2 cut(s)	294, 792
MspA1I	CMGCKG	2 cut(s)	95, 436
MspR9I	CCNGG	2 cut(s)	564, 731
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	564, 731
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	4 cut(s)	5, 147, 418, 605
NlaIII	CATG	6 cut(s)	21, 82, 125, 408, 448, 636
NruI	TCGCGA	1 cut(s)	381
NspI	RCATGY	1 cut(s)	636
PciI	ACATGT	1 cut(s)	632
PfeI	GAWTC	3 cut(s)	118, 429, 452
PkrI	GCNGC	1 cut(s)	811
PpuMI	RGGWCCY	1 cut(s)	481
PscI	ACATGT	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	562, 729
PspGI	CCWGG	2 cut(s)	562, 729
PspPI	GGNCC	1 cut(s)	481
PspPPI	RGGWCCY	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	147, 605
PvuII	CAGCTG	1 cut(s)	436
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	294, 792
SatI	GCNGC	1 cut(s)	810
Sau3AI	GATC	4 cut(s)	5, 147, 418, 605
Sau96I	GGNCC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	564, 731
SetI	ASST	9 cut(s)	169, 181, 191, 438, 483, 504, 575, 615, 811
SfaNI	GCATC	2 cut(s)	364, 688
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	4 cut(s)	383, 440, 537, 793
SsiI	CCGC	2 cut(s)	95, 513
SspI	AATATT	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	562, 729
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	383, 440, 537, 793
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	3 cut(s)	118, 429, 452
Tru1I	TTAA	2 cut(s)	294, 792
Tru9I	TTAA	2 cut(s)	294, 792
TseI	GCWGC	1 cut(s)	809
TspDTI	ATGAA	8 cut(s)	6, 95, 110, 288, 384, 433, 708, 816
TspGWI	ACGGA	2 cut(s)	335, 560
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	383, 440
XceI	RCATGY	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.