Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018606

Physical Location & Seq

Genomic Coordinates Forward (+)

2126133 .. 2128033

Gene Structure 1901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGACTGAGCCGCGCAAAAGCAAGAGAAAATGGGATCAGTTTGTTCATGTTTCACACAAGGCTGTCCAGACCCAGATGGAAATCGACAACTTGGGTTTGAACATGAAGGATACTACAGCGGAAAAGGAAGATTTGAGAAAGATTCATGCCAAGATTGTGGAGCAGGAAGAGATCTTTGTGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGTGTCGCTACAACAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGAAGCAGAATATAAGAAACGACACTTTCAGAGTGTATATGAAGATAGAAGGAAGGCTGTTAAAGATGTCCCTTGCTTTTGGGTTACAGCAATGTATGCTAACAAGATAATCCGTAAGGAGATTGCAAAGCACGATGAAGATGCTCTCGAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTAAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGCGGAGAGTACTGTACATTCTTGATGGCAATTGGCCGGTGTTTTGTTTTTTTCCTTATGGTTGGATTAACTTGTTGTAGGACTGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTACTGAGAAAATGACCATTGGATCTGAGGTTGTTCAAGTAGCCCAAACATGTCAAAGTTTCTTCAACTTCTTTGCTACGAAAACTCATCGGACTTCTCTTTGTTTGGATGAAGATGCTGATAAACTCAAAGGCAATATTATTCCCCTGGATTTTGCAATCGCTGTCATACTTAGAGACGATATCATTCCACACGCAATATCGTGGTTTAATTATGATGAAGAAGCTGCTATGGATGAAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008283 GO:0009987 GO:0016020 GO:0016444 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

300

Amino Acids

35.48

Weight (kDa)

5.92

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	44 - 288	6.8e-42	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018606)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062051
rosa_laevigata	RLG00000035528
rosa_multiflora	Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153690
rosa_rugosa	Rorug05G0345800
rosa_samantha	Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana	Rw2G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	3 cut(s)	11, 119, 537
AclWI	GGATC	2 cut(s)	42, 685
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	2 cut(s)	407, 464
AcuI	CTGAAG	2 cut(s)	434, 548
AfaI	GTAC	3 cut(s)	545, 550, 658
AflIII	ACRYGT	1 cut(s)	704
AgsI	TTSAA	4 cut(s)	100, 496, 692, 721
AjnI	CCWGG	2 cut(s)	634, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	5 cut(s)	191, 203, 460, 526, 881
AluI	AGCT	5 cut(s)	191, 203, 460, 526, 881
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	2 cut(s)	42, 685
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	881
ApoI	RAATTY	2 cut(s)	407, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	868
BccI	CCATC	3 cut(s)	70, 527, 553
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	2 cut(s)	636, 803
BciVI	GTATCC	2 cut(s)	103, 642
BcoDI	GTCTC	1 cut(s)	825
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	2 cut(s)	103, 642
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	2 cut(s)	11, 882
BlsI	GCNGC	2 cut(s)	12, 883
BmcAI	AGTACT	2 cut(s)	545, 658
Bme1390I	CCNGG	2 cut(s)	636, 803
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	636, 803
BmsI	GCATC	2 cut(s)	388, 760
BsaBI	GATNNNNATC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	801
Bse118I	RCCGGY	1 cut(s)	570
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	2 cut(s)	636, 803
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	3 cut(s)	538, 769, 895
BseJI	GATNNNNATC	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	651, 672
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	868
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	825
BsmBI	CGTCTC	1 cut(s)	825
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	570
Bsp1407I	TGTACA	1 cut(s)	548
Bsp143I	GATC	4 cut(s)	34, 171, 442, 677
BspACI	CCGC	3 cut(s)	11, 119, 537
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	2 cut(s)	652, 673
BspFNI	CGCG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	42, 685
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	632
BssAI	RCCGGY	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	4 cut(s)	34, 171, 442, 677
Bst2UI	CCWGG	2 cut(s)	636, 803
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	6, 660, 681, 827
BstF5I	GGATG	3 cut(s)	538, 769, 895
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	4 cut(s)	37, 174, 445, 680
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	4 cut(s)	34, 171, 442, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	636, 803
BstNSI	RCATGY	1 cut(s)	708
BstSCI	CCNGG	2 cut(s)	634, 801
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	868
BstX2I	RGATCY	2 cut(s)	171, 677
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	171, 677
BsuI	GTATCC	2 cut(s)	103, 642
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	538, 769, 895
CfoI	GCGC	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	3 cut(s)	544, 549, 657
CviAII	CATG	6 cut(s)	47, 103, 146, 429, 469, 705
CviQI	GTAC	3 cut(s)	544, 549, 657
DdeI	CTNAG	4 cut(s)	6, 660, 681, 827
DpnI	GATC	4 cut(s)	36, 173, 444, 679
DpnII	GATC	4 cut(s)	34, 171, 442, 677
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	552
Eco32I	GATATC	2 cut(s)	421, 838
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	434, 548
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRI	GAATTC	2 cut(s)	407, 464
EcoRII	CCWGG	2 cut(s)	634, 801
EcoRV	GATATC	2 cut(s)	421, 838
Esp3I	CGTCTC	1 cut(s)	825
FaeI	CATG	6 cut(s)	50, 106, 149, 432, 472, 708
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	6 cut(s)	46, 102, 145, 428, 468, 704
Fnu4HI	GCNGC	2 cut(s)	11, 882
FokI	GGATG	2 cut(s)	545, 776
Fsp4HI	GCNGC	2 cut(s)	11, 882
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	11, 882
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	1 cut(s)	571
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	6 cut(s)	50, 106, 149, 432, 472, 708
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	142, 453, 476
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	1 cut(s)	502
Hpy188I	TCNGA	3 cut(s)	288, 682, 747
Hpy188III	TCNNGA	4 cut(s)	67, 404, 412, 556
HpyAV	CCTTC	6 cut(s)	100, 175, 300, 304, 409, 523
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	2 cut(s)	383, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	4 cut(s)	6, 660, 681, 827
Hsp92II	CATG	6 cut(s)	50, 106, 149, 432, 472, 708
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	34, 171, 442, 677
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	1 cut(s)	868
LweI	GCATC	2 cut(s)	388, 760
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	4 cut(s)	36, 173, 444, 679
MboI	GATC	4 cut(s)	34, 171, 442, 677
MboII	GAAGA	8 cut(s)	140, 179, 311, 407, 471, 709, 779, 887
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	171, 677
MluCI	AATT	4 cut(s)	407, 464, 564, 865
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	3 cut(s)	496, 518, 676
MseI	TTAA	3 cut(s)	318, 602, 864
MspA1I	CMGCKG	2 cut(s)	119, 460
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	2 cut(s)	636, 803
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	2 cut(s)	636, 803
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	4 cut(s)	34, 171, 442, 677
NlaIII	CATG	6 cut(s)	50, 106, 149, 432, 472, 708
NspI	RCATGY	1 cut(s)	708
PciI	ACATGT	1 cut(s)	704
PfeI	GAWTC	3 cut(s)	142, 453, 476
PkrI	GCNGC	2 cut(s)	12, 883
PpuMI	RGGWCCY	1 cut(s)	505
PscI	ACATGT	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	634, 801
PspGI	CCWGG	2 cut(s)	634, 801
PspPI	GGNCC	1 cut(s)	505
PspPPI	RGGWCCY	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	171, 677
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	3 cut(s)	545, 550, 658
RsaNI	GTAC	3 cut(s)	544, 549, 657
SaqAI	TTAA	3 cut(s)	318, 602, 864
SatI	GCNGC	2 cut(s)	11, 882
Sau3AI	GATC	4 cut(s)	34, 171, 442, 677
Sau96I	GGNCC	1 cut(s)	505
ScaI	AGTACT	2 cut(s)	545, 658
ScrFI	CCNGG	2 cut(s)	636, 803
SetI	ASST	9 cut(s)	193, 205, 215, 462, 507, 528, 647, 687, 883
SfaNI	GCATC	2 cut(s)	388, 760
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	505
Sse9I	AATT	4 cut(s)	407, 464, 564, 865
SsiI	CCGC	3 cut(s)	11, 119, 537
SspI	AATATT	1 cut(s)	793
StyD4I	CCNGG	2 cut(s)	634, 801
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	2 cut(s)	84, 405
TasI	AATT	4 cut(s)	407, 464, 564, 865
TatI	WGTACW	3 cut(s)	543, 548, 656
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	142, 453, 476
Tru1I	TTAA	3 cut(s)	318, 602, 864
Tru9I	TTAA	3 cut(s)	318, 602, 864
TseI	GCWGC	1 cut(s)	881
TspDTI	ATGAA	8 cut(s)	35, 119, 134, 312, 408, 457, 780, 888
TspGWI	ACGGA	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	2 cut(s)	407, 464
XceI	RCATGY	1 cut(s)	708
ZrmI	AGTACT	2 cut(s)	545, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.